Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_502 and Pf1N1B4_503 are separated by 2 nucleotides Pf1N1B4_503 and Pf1N1B4_504 are separated by 26 nucleotides Pf1N1B4_504 and Pf1N1B4_505 are separated by 465 nucleotides Pf1N1B4_505 and Pf1N1B4_506 are separated by 40 nucleotides
Pf1N1B4_502 - Predicted ATPase with chaperone activity, associated with Flp pilus assembly, at 594,190 to 595,524
_502
Pf1N1B4_503 - Type IV prepilin peptidase TadV/CpaA, at 595,527 to 596,057
_503
Pf1N1B4_504 - Flp pilus assembly protein, pilin Flp, at 596,084 to 596,275
_504
Pf1N1B4_505 - hypothetical protein, at 596,741 to 596,926
_505
Pf1N1B4_506 - Transcriptional regulator, AraC family, at 596,967 to 597,551
_506
Position (kb)
595
596
597 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 594.607 kb on + strand, within Pf1N1B4_502 at 594.881 kb on + strand, within Pf1N1B4_502 at 594.881 kb on + strand, within Pf1N1B4_502 at 594.881 kb on + strand, within Pf1N1B4_502 at 594.881 kb on + strand, within Pf1N1B4_502 at 594.881 kb on + strand, within Pf1N1B4_502 at 594.882 kb on - strand, within Pf1N1B4_502 at 594.882 kb on - strand, within Pf1N1B4_502 at 594.968 kb on + strand, within Pf1N1B4_502 at 594.968 kb on + strand, within Pf1N1B4_502 at 594.968 kb on + strand, within Pf1N1B4_502 at 594.969 kb on - strand, within Pf1N1B4_502 at 594.969 kb on - strand, within Pf1N1B4_502 at 594.969 kb on - strand, within Pf1N1B4_502 at 594.969 kb on - strand, within Pf1N1B4_502 at 594.995 kb on + strand, within Pf1N1B4_502 at 594.996 kb on - strand, within Pf1N1B4_502 at 594.996 kb on - strand, within Pf1N1B4_502 at 594.996 kb on - strand, within Pf1N1B4_502 at 595.060 kb on + strand, within Pf1N1B4_502 at 595.142 kb on + strand, within Pf1N1B4_502 at 595.143 kb on - strand, within Pf1N1B4_502 at 595.146 kb on + strand, within Pf1N1B4_502 at 595.147 kb on - strand, within Pf1N1B4_502 at 595.147 kb on - strand, within Pf1N1B4_502 at 595.175 kb on + strand at 595.175 kb on + strand, within Pf1N1B4_502 at 595.176 kb on - strand, within Pf1N1B4_502 at 595.277 kb on - strand, within Pf1N1B4_502 at 595.277 kb on - strand, within Pf1N1B4_502 at 595.280 kb on - strand at 595.280 kb on - strand, within Pf1N1B4_502 at 595.496 kb on + strand at 595.496 kb on + strand at 595.496 kb on + strand at 595.497 kb on - strand at 595.507 kb on - strand at 595.529 kb on - strand at 595.561 kb on + strand at 595.561 kb on + strand at 595.643 kb on + strand at 595.645 kb on + strand, within Pf1N1B4_503 at 595.645 kb on + strand, within Pf1N1B4_503 at 595.645 kb on + strand, within Pf1N1B4_503 at 595.645 kb on + strand, within Pf1N1B4_503 at 595.645 kb on + strand, within Pf1N1B4_503 at 595.645 kb on + strand, within Pf1N1B4_503 at 595.783 kb on - strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand, within Pf1N1B4_503 at 595.843 kb on + strand at 595.844 kb on - strand, within Pf1N1B4_503 at 595.844 kb on - strand, within Pf1N1B4_503 at 595.844 kb on - strand, within Pf1N1B4_503 at 595.844 kb on - strand, within Pf1N1B4_503 at 595.844 kb on - strand, within Pf1N1B4_503 at 595.844 kb on - strand, within Pf1N1B4_503 at 595.844 kb on - strand, within Pf1N1B4_503 at 595.884 kb on + strand, within Pf1N1B4_503 at 595.885 kb on - strand, within Pf1N1B4_503 at 595.918 kb on + strand, within Pf1N1B4_503 at 595.918 kb on + strand, within Pf1N1B4_503 at 595.918 kb on + strand, within Pf1N1B4_503 at 595.918 kb on + strand, within Pf1N1B4_503 at 595.919 kb on - strand, within Pf1N1B4_503 at 595.950 kb on + strand, within Pf1N1B4_503 at 596.034 kb on - strand at 596.071 kb on - strand at 596.071 kb on - strand at 596.071 kb on - strand at 596.074 kb on - strand at 596.074 kb on - strand at 596.082 kb on + strand at 596.082 kb on + strand at 596.083 kb on - strand at 596.083 kb on - strand at 596.085 kb on + strand at 596.086 kb on - strand at 596.092 kb on + strand at 596.092 kb on + strand at 596.093 kb on - strand at 596.202 kb on + strand, within Pf1N1B4_504 at 596.258 kb on - strand at 596.258 kb on - strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.345 kb on - strand at 596.389 kb on + strand at 596.389 kb on + strand at 596.390 kb on - strand at 596.417 kb on - strand at 596.551 kb on - strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.642 kb on - strand at 596.642 kb on - strand at 596.644 kb on + strand at 596.644 kb on + strand at 596.645 kb on - strand at 596.678 kb on + strand at 596.678 kb on + strand at 596.988 kb on + strand at 596.988 kb on + strand at 596.988 kb on + strand at 596.989 kb on - strand at 596.989 kb on - strand at 596.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 594,607 + Pf1N1B4_502 0.31 -1.1 594,881 + Pf1N1B4_502 0.52 -0.8 594,881 + Pf1N1B4_502 0.52 -0.7 594,881 + Pf1N1B4_502 0.52 +1.5 594,881 + Pf1N1B4_502 0.52 -1.4 594,881 + Pf1N1B4_502 0.52 -0.1 594,882 - Pf1N1B4_502 0.52 +0.9 594,882 - Pf1N1B4_502 0.52 -1.1 594,968 + Pf1N1B4_502 0.58 +0.5 594,968 + Pf1N1B4_502 0.58 +0.3 594,968 + Pf1N1B4_502 0.58 +2.6 594,969 - Pf1N1B4_502 0.58 -0.1 594,969 - Pf1N1B4_502 0.58 -1.7 594,969 - Pf1N1B4_502 0.58 +0.5 594,969 - Pf1N1B4_502 0.58 +0.3 594,995 + Pf1N1B4_502 0.60 -0.5 594,996 - Pf1N1B4_502 0.60 -0.1 594,996 - Pf1N1B4_502 0.60 -1.7 594,996 - Pf1N1B4_502 0.60 -0.1 595,060 + Pf1N1B4_502 0.65 +0.5 595,142 + Pf1N1B4_502 0.71 +0.7 595,143 - Pf1N1B4_502 0.71 -0.1 595,146 + Pf1N1B4_502 0.72 -0.1 595,147 - Pf1N1B4_502 0.72 -0.3 595,147 - Pf1N1B4_502 0.72 +0.5 595,175 + +1.9 595,175 + Pf1N1B4_502 0.74 -1.7 595,176 - Pf1N1B4_502 0.74 +0.3 595,277 - Pf1N1B4_502 0.81 -0.7 595,277 - Pf1N1B4_502 0.81 -0.1 595,280 - -1.1 595,280 - Pf1N1B4_502 0.82 +0.2 595,496 + +0.9 595,496 + -0.1 595,496 + -1.6 595,497 - +0.2 595,507 - -0.1 595,529 - -2.4 595,561 + +0.9 595,561 + -1.1 595,643 + -1.6 595,645 + Pf1N1B4_503 0.22 -1.1 595,645 + Pf1N1B4_503 0.22 +0.9 595,645 + Pf1N1B4_503 0.22 -0.1 595,645 + Pf1N1B4_503 0.22 -1.2 595,645 + Pf1N1B4_503 0.22 -2.4 595,645 + Pf1N1B4_503 0.22 -0.3 595,783 - Pf1N1B4_503 0.48 -1.1 595,843 + Pf1N1B4_503 0.60 +1.4 595,843 + Pf1N1B4_503 0.60 +0.9 595,843 + Pf1N1B4_503 0.60 -1.6 595,843 + Pf1N1B4_503 0.60 -0.9 595,843 + Pf1N1B4_503 0.60 -2.6 595,843 + Pf1N1B4_503 0.60 -0.3 595,843 + Pf1N1B4_503 0.60 +0.4 595,843 + Pf1N1B4_503 0.60 -1.1 595,843 + Pf1N1B4_503 0.60 -2.2 595,843 + Pf1N1B4_503 0.60 -1.6 595,843 + Pf1N1B4_503 0.60 -0.8 595,843 + Pf1N1B4_503 0.60 +0.2 595,843 + Pf1N1B4_503 0.60 -1.2 595,843 + Pf1N1B4_503 0.60 +0.3 595,843 + -0.6 595,844 - Pf1N1B4_503 0.60 -0.1 595,844 - Pf1N1B4_503 0.60 -0.3 595,844 - Pf1N1B4_503 0.60 -3.4 595,844 - Pf1N1B4_503 0.60 +1.9 595,844 - Pf1N1B4_503 0.60 +1.5 595,844 - Pf1N1B4_503 0.60 -1.6 595,844 - Pf1N1B4_503 0.60 -2.6 595,884 + Pf1N1B4_503 0.67 +0.4 595,885 - Pf1N1B4_503 0.67 -0.1 595,918 + Pf1N1B4_503 0.74 -0.5 595,918 + Pf1N1B4_503 0.74 -1.1 595,918 + Pf1N1B4_503 0.74 -0.1 595,918 + Pf1N1B4_503 0.74 -1.4 595,919 - Pf1N1B4_503 0.74 -1.4 595,950 + Pf1N1B4_503 0.80 +0.9 596,034 - -0.1 596,071 - +0.9 596,071 - +0.7 596,071 - +0.5 596,074 - -0.4 596,074 - -1.6 596,082 + -0.7 596,082 + +0.4 596,083 - -0.1 596,083 - +0.8 596,085 + +0.4 596,086 - +0.7 596,092 + +1.9 596,092 + +0.1 596,093 - +0.7 596,202 + Pf1N1B4_504 0.61 -0.7 596,258 - +0.3 596,258 - -1.1 596,344 + -1.6 596,344 + +1.9 596,344 + +0.5 596,345 - +0.9 596,389 + +1.1 596,389 + -0.1 596,390 - +1.9 596,417 - -2.1 596,551 - -2.2 596,641 + -0.1 596,641 + -0.8 596,641 + -1.6 596,641 + +1.8 596,641 + -1.4 596,642 - +1.4 596,642 - -1.1 596,644 + -2.4 596,644 + -1.6 596,645 - -0.4 596,678 + -2.6 596,678 + -0.3 596,988 + -0.1 596,988 + -0.3 596,988 + -1.1 596,989 - -0.9 596,989 - +0.9 596,989 - +0.3
Or see this region's nucleotide sequence