Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4821 and Pf1N1B4_4822 overlap by 20 nucleotides Pf1N1B4_4822 and Pf1N1B4_4823 overlap by 4 nucleotides Pf1N1B4_4823 and Pf1N1B4_4824 are separated by 288 nucleotides
Pf1N1B4_4821 - Paraquat-inducible protein B, at 5,324,745 to 5,326,400
_4821
Pf1N1B4_4822 - Paraquat-inducible protein A, at 5,326,381 to 5,327,061
_4822
Pf1N1B4_4823 - Paraquat-inducible protein A, at 5,327,058 to 5,327,654
_4823
Pf1N1B4_4824 - Gamma-glutamyl-putrescine oxidase (EC1.4.3.-), at 5,327,943 to 5,329,244
_4824
Position (kb)
5326
5327
5328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5325.518 kb on - strand, within Pf1N1B4_4821 at 5325.848 kb on - strand, within Pf1N1B4_4821 at 5325.848 kb on - strand at 5325.919 kb on + strand, within Pf1N1B4_4821 at 5325.998 kb on - strand, within Pf1N1B4_4821 at 5325.998 kb on - strand, within Pf1N1B4_4821 at 5326.272 kb on + strand at 5326.273 kb on - strand at 5326.498 kb on + strand, within Pf1N1B4_4822 at 5326.499 kb on - strand, within Pf1N1B4_4822 at 5326.499 kb on - strand, within Pf1N1B4_4822 at 5326.761 kb on + strand, within Pf1N1B4_4822 at 5326.883 kb on + strand, within Pf1N1B4_4822 at 5326.883 kb on + strand at 5326.884 kb on - strand, within Pf1N1B4_4822 at 5326.908 kb on - strand, within Pf1N1B4_4822 at 5327.061 kb on + strand at 5327.082 kb on + strand at 5327.083 kb on - strand at 5327.151 kb on + strand, within Pf1N1B4_4823 at 5327.154 kb on + strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.369 kb on + strand, within Pf1N1B4_4823 at 5327.461 kb on + strand, within Pf1N1B4_4823 at 5327.564 kb on + strand, within Pf1N1B4_4823 at 5327.564 kb on + strand, within Pf1N1B4_4823 at 5327.565 kb on - strand, within Pf1N1B4_4823 at 5327.605 kb on + strand at 5327.649 kb on - strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.703 kb on - strand at 5327.728 kb on + strand at 5327.729 kb on - strand at 5327.729 kb on - strand at 5327.756 kb on + strand at 5327.756 kb on + strand at 5327.757 kb on - strand at 5327.887 kb on + strand at 5327.888 kb on - strand at 5327.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,325,518 - Pf1N1B4_4821 0.47 -1.1 5,325,848 - Pf1N1B4_4821 0.67 +0.5 5,325,848 - -0.5 5,325,919 + Pf1N1B4_4821 0.71 -1.1 5,325,998 - Pf1N1B4_4821 0.76 +1.5 5,325,998 - Pf1N1B4_4821 0.76 +0.2 5,326,272 + -0.0 5,326,273 - -1.1 5,326,498 + Pf1N1B4_4822 0.17 -0.0 5,326,499 - Pf1N1B4_4822 0.17 +1.1 5,326,499 - Pf1N1B4_4822 0.17 -0.5 5,326,761 + Pf1N1B4_4822 0.56 -0.5 5,326,883 + Pf1N1B4_4822 0.74 +0.5 5,326,883 + +0.5 5,326,884 - Pf1N1B4_4822 0.74 +2.1 5,326,908 - Pf1N1B4_4822 0.77 +1.8 5,327,061 + +1.8 5,327,082 + +1.8 5,327,083 - -0.3 5,327,151 + Pf1N1B4_4823 0.16 +0.1 5,327,154 + Pf1N1B4_4823 0.16 -0.5 5,327,155 - Pf1N1B4_4823 0.16 -0.9 5,327,155 - Pf1N1B4_4823 0.16 -2.1 5,327,155 - Pf1N1B4_4823 0.16 -0.5 5,327,155 - Pf1N1B4_4823 0.16 -0.5 5,327,369 + Pf1N1B4_4823 0.52 -0.8 5,327,461 + Pf1N1B4_4823 0.68 +1.1 5,327,564 + Pf1N1B4_4823 0.85 +0.1 5,327,564 + Pf1N1B4_4823 0.85 +1.7 5,327,565 - Pf1N1B4_4823 0.85 +0.5 5,327,605 + +1.1 5,327,649 - +0.7 5,327,702 + +1.1 5,327,702 + -2.5 5,327,702 + -2.1 5,327,702 + +1.3 5,327,702 + -0.7 5,327,702 + +1.0 5,327,703 - +0.8 5,327,728 + +1.1 5,327,729 - -0.5 5,327,729 - -1.1 5,327,756 + +1.5 5,327,756 + +0.2 5,327,757 - +0.7 5,327,887 + -0.1 5,327,888 - -1.2 5,327,888 - +2.7
Or see this region's nucleotide sequence