Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4670 and Pf1N1B4_4671 are separated by 285 nucleotides Pf1N1B4_4671 and Pf1N1B4_4672 are separated by 151 nucleotides
Pf1N1B4_4670 - Sensory box/GGDEF family protein, at 5,149,861 to 5,151,942
_4670
Pf1N1B4_4671 - Short-chain dehydrogenase/reductase SDR, at 5,152,228 to 5,152,974
_4671
Pf1N1B4_4672 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,153,126 to 5,154,535
_4672
Position (kb)
5152
5153 Strain fitness (log2 ratio)
-2
-1
0
1 at 5151.406 kb on + strand, within Pf1N1B4_4670 at 5151.407 kb on - strand at 5151.407 kb on - strand, within Pf1N1B4_4670 at 5151.646 kb on + strand, within Pf1N1B4_4670 at 5151.647 kb on - strand, within Pf1N1B4_4670 at 5151.865 kb on + strand at 5151.866 kb on - strand at 5152.113 kb on + strand at 5152.114 kb on - strand at 5152.114 kb on - strand at 5152.324 kb on + strand at 5152.687 kb on + strand, within Pf1N1B4_4671 at 5152.687 kb on + strand, within Pf1N1B4_4671 at 5152.688 kb on - strand, within Pf1N1B4_4671 at 5152.688 kb on - strand, within Pf1N1B4_4671 at 5152.688 kb on - strand, within Pf1N1B4_4671 at 5152.696 kb on + strand, within Pf1N1B4_4671 at 5152.799 kb on - strand, within Pf1N1B4_4671 at 5152.799 kb on - strand, within Pf1N1B4_4671 at 5153.210 kb on - strand at 5153.674 kb on - strand, within Pf1N1B4_4672
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,151,406 + Pf1N1B4_4670 0.74 -2.1 5,151,407 - +0.1 5,151,407 - Pf1N1B4_4670 0.74 +0.8 5,151,646 + Pf1N1B4_4670 0.86 +0.5 5,151,647 - Pf1N1B4_4670 0.86 -0.0 5,151,865 + -1.8 5,151,866 - +1.1 5,152,113 + -0.5 5,152,114 - -0.2 5,152,114 - +1.5 5,152,324 + +1.7 5,152,687 + Pf1N1B4_4671 0.61 +0.3 5,152,687 + Pf1N1B4_4671 0.61 -0.8 5,152,688 - Pf1N1B4_4671 0.62 -0.5 5,152,688 - Pf1N1B4_4671 0.62 -0.5 5,152,688 - Pf1N1B4_4671 0.62 -0.8 5,152,696 + Pf1N1B4_4671 0.63 -1.1 5,152,799 - Pf1N1B4_4671 0.76 -1.1 5,152,799 - Pf1N1B4_4671 0.76 -0.5 5,153,210 - +1.5 5,153,674 - Pf1N1B4_4672 0.39 +0.0
Or see this region's nucleotide sequence