Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4458 and Pf1N1B4_4459 overlap by 11 nucleotides Pf1N1B4_4459 and Pf1N1B4_4460 are separated by 187 nucleotides Pf1N1B4_4460 and Pf1N1B4_4461 are separated by 142 nucleotides
Pf1N1B4_4458 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,918,049 to 4,919,530
_4458
Pf1N1B4_4459 - Thermostable hemolysin delta-VPH, at 4,919,520 to 4,920,197
_4459
Pf1N1B4_4460 - Cytochrome b561, at 4,920,385 to 4,920,957
_4460
Pf1N1B4_4461 - Glutathione-regulated potassium-efflux system protein KefB, at 4,921,100 to 4,922,908
_4461
Position (kb)
4919
4920
4921 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4918.662 kb on + strand, within Pf1N1B4_4458 at 4918.662 kb on + strand at 4918.663 kb on - strand, within Pf1N1B4_4458 at 4919.095 kb on + strand, within Pf1N1B4_4458 at 4919.430 kb on + strand at 4919.430 kb on + strand at 4919.431 kb on - strand at 4919.648 kb on - strand, within Pf1N1B4_4459 at 4919.797 kb on + strand, within Pf1N1B4_4459 at 4919.797 kb on + strand at 4919.797 kb on + strand at 4919.798 kb on - strand, within Pf1N1B4_4459 at 4920.235 kb on - strand at 4920.285 kb on - strand at 4920.384 kb on + strand at 4920.384 kb on + strand at 4920.385 kb on - strand at 4920.404 kb on + strand at 4920.404 kb on + strand at 4920.469 kb on + strand, within Pf1N1B4_4460 at 4920.673 kb on + strand, within Pf1N1B4_4460 at 4920.743 kb on - strand, within Pf1N1B4_4460 at 4921.049 kb on + strand at 4921.050 kb on - strand at 4921.050 kb on - strand at 4921.050 kb on - strand at 4921.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,918,662 + Pf1N1B4_4458 0.41 -0.1 4,918,662 + +0.5 4,918,663 - Pf1N1B4_4458 0.41 +0.5 4,919,095 + Pf1N1B4_4458 0.71 -0.2 4,919,430 + -0.5 4,919,430 + -0.9 4,919,431 - -1.0 4,919,648 - Pf1N1B4_4459 0.19 +0.9 4,919,797 + Pf1N1B4_4459 0.41 +0.3 4,919,797 + +1.1 4,919,797 + -1.5 4,919,798 - Pf1N1B4_4459 0.41 +1.9 4,920,235 - +1.4 4,920,285 - +0.3 4,920,384 + -3.0 4,920,384 + +1.9 4,920,385 - +0.1 4,920,404 + -0.3 4,920,404 + +0.2 4,920,469 + Pf1N1B4_4460 0.15 -2.0 4,920,673 + Pf1N1B4_4460 0.50 +1.4 4,920,743 - Pf1N1B4_4460 0.62 -0.8 4,921,049 + -1.6 4,921,050 - -0.5 4,921,050 - -1.8 4,921,050 - -0.5 4,921,050 - +0.3
Or see this region's nucleotide sequence