Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4400 and Pf1N1B4_4401 are separated by 381 nucleotides Pf1N1B4_4401 and Pf1N1B4_4402 are separated by 248 nucleotides
Pf1N1B4_4400 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 4,859,333 to 4,860,109
_4400
Pf1N1B4_4401 - Non-heme chloroperoxidase (EC 1.11.1.10), at 4,860,491 to 4,861,321
_4401
Pf1N1B4_4402 - SoxH protein, homolog, at 4,861,570 to 4,862,466
_4402
Position (kb)
4860
4861
4862 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4859.788 kb on - strand, within Pf1N1B4_4400 at 4859.790 kb on + strand, within Pf1N1B4_4400 at 4859.791 kb on - strand, within Pf1N1B4_4400 at 4860.090 kb on - strand at 4860.090 kb on - strand at 4860.109 kb on + strand at 4860.395 kb on - strand at 4860.596 kb on + strand, within Pf1N1B4_4401 at 4860.596 kb on + strand, within Pf1N1B4_4401 at 4860.597 kb on - strand at 4860.733 kb on - strand at 4860.840 kb on - strand, within Pf1N1B4_4401 at 4860.965 kb on + strand, within Pf1N1B4_4401 at 4861.098 kb on + strand, within Pf1N1B4_4401 at 4861.098 kb on + strand, within Pf1N1B4_4401 at 4861.099 kb on - strand, within Pf1N1B4_4401 at 4861.099 kb on - strand, within Pf1N1B4_4401 at 4861.309 kb on + strand at 4861.309 kb on + strand at 4861.313 kb on - strand at 4861.360 kb on + strand at 4861.360 kb on + strand at 4861.360 kb on + strand at 4861.361 kb on - strand at 4861.361 kb on - strand at 4861.469 kb on + strand at 4861.469 kb on + strand at 4861.470 kb on - strand at 4861.470 kb on - strand at 4861.470 kb on - strand at 4861.470 kb on - strand at 4861.470 kb on - strand at 4861.470 kb on - strand at 4861.470 kb on - strand at 4861.575 kb on - strand at 4861.824 kb on - strand, within Pf1N1B4_4402 at 4861.824 kb on - strand, within Pf1N1B4_4402 at 4861.889 kb on + strand, within Pf1N1B4_4402 at 4861.890 kb on - strand at 4861.922 kb on + strand, within Pf1N1B4_4402 at 4862.260 kb on + strand, within Pf1N1B4_4402
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,859,788 - Pf1N1B4_4400 0.59 +0.1 4,859,790 + Pf1N1B4_4400 0.59 -1.4 4,859,791 - Pf1N1B4_4400 0.59 -1.0 4,860,090 - +1.1 4,860,090 - -0.0 4,860,109 + +0.6 4,860,395 - +1.6 4,860,596 + Pf1N1B4_4401 0.13 -0.6 4,860,596 + Pf1N1B4_4401 0.13 -1.0 4,860,597 - +0.6 4,860,733 - -1.8 4,860,840 - Pf1N1B4_4401 0.42 -0.0 4,860,965 + Pf1N1B4_4401 0.57 -1.1 4,861,098 + Pf1N1B4_4401 0.73 +0.1 4,861,098 + Pf1N1B4_4401 0.73 -0.4 4,861,099 - Pf1N1B4_4401 0.73 -1.6 4,861,099 - Pf1N1B4_4401 0.73 -0.4 4,861,309 + +2.9 4,861,309 + +0.3 4,861,313 - -1.0 4,861,360 + +1.1 4,861,360 + -0.0 4,861,360 + -1.4 4,861,361 - -2.0 4,861,361 - +1.0 4,861,469 + -2.4 4,861,469 + -1.0 4,861,470 - -0.4 4,861,470 - +0.6 4,861,470 - +0.1 4,861,470 - +0.6 4,861,470 - +0.1 4,861,470 - +0.1 4,861,470 - +0.8 4,861,575 - -2.0 4,861,824 - Pf1N1B4_4402 0.28 +0.4 4,861,824 - Pf1N1B4_4402 0.28 -0.4 4,861,889 + Pf1N1B4_4402 0.36 +1.9 4,861,890 - +1.9 4,861,922 + Pf1N1B4_4402 0.39 -0.9 4,862,260 + Pf1N1B4_4402 0.77 +0.1
Or see this region's nucleotide sequence