Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4401

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4400 and Pf1N1B4_4401 are separated by 381 nucleotidesPf1N1B4_4401 and Pf1N1B4_4402 are separated by 248 nucleotides Pf1N1B4_4400 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 4,859,333 to 4,860,109 _4400 Pf1N1B4_4401 - Non-heme chloroperoxidase (EC 1.11.1.10), at 4,860,491 to 4,861,321 _4401 Pf1N1B4_4402 - SoxH protein, homolog, at 4,861,570 to 4,862,466 _4402 Position (kb) 4860 4861 4862Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4859.788 kb on - strand, within Pf1N1B4_4400at 4859.790 kb on + strand, within Pf1N1B4_4400at 4859.791 kb on - strand, within Pf1N1B4_4400at 4860.090 kb on - strandat 4860.090 kb on - strandat 4860.109 kb on + strandat 4860.395 kb on - strandat 4860.596 kb on + strand, within Pf1N1B4_4401at 4860.596 kb on + strand, within Pf1N1B4_4401at 4860.597 kb on - strandat 4860.733 kb on - strandat 4860.840 kb on - strand, within Pf1N1B4_4401at 4860.965 kb on + strand, within Pf1N1B4_4401at 4861.098 kb on + strand, within Pf1N1B4_4401at 4861.098 kb on + strand, within Pf1N1B4_4401at 4861.099 kb on - strand, within Pf1N1B4_4401at 4861.099 kb on - strand, within Pf1N1B4_4401at 4861.309 kb on + strandat 4861.309 kb on + strandat 4861.313 kb on - strandat 4861.360 kb on + strandat 4861.360 kb on + strandat 4861.360 kb on + strandat 4861.361 kb on - strandat 4861.361 kb on - strandat 4861.469 kb on + strandat 4861.469 kb on + strandat 4861.470 kb on - strandat 4861.470 kb on - strandat 4861.470 kb on - strandat 4861.470 kb on - strandat 4861.470 kb on - strandat 4861.470 kb on - strandat 4861.470 kb on - strandat 4861.575 kb on - strandat 4861.824 kb on - strand, within Pf1N1B4_4402at 4861.824 kb on - strand, within Pf1N1B4_4402at 4861.889 kb on + strand, within Pf1N1B4_4402at 4861.890 kb on - strandat 4861.922 kb on + strand, within Pf1N1B4_4402at 4862.260 kb on + strand, within Pf1N1B4_4402

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,859,788 - Pf1N1B4_4400 0.59 +0.1
4,859,790 + Pf1N1B4_4400 0.59 -1.4
4,859,791 - Pf1N1B4_4400 0.59 -1.0
4,860,090 - +1.1
4,860,090 - -0.0
4,860,109 + +0.6
4,860,395 - +1.6
4,860,596 + Pf1N1B4_4401 0.13 -0.6
4,860,596 + Pf1N1B4_4401 0.13 -1.0
4,860,597 - +0.6
4,860,733 - -1.8
4,860,840 - Pf1N1B4_4401 0.42 -0.0
4,860,965 + Pf1N1B4_4401 0.57 -1.1
4,861,098 + Pf1N1B4_4401 0.73 +0.1
4,861,098 + Pf1N1B4_4401 0.73 -0.4
4,861,099 - Pf1N1B4_4401 0.73 -1.6
4,861,099 - Pf1N1B4_4401 0.73 -0.4
4,861,309 + +2.9
4,861,309 + +0.3
4,861,313 - -1.0
4,861,360 + +1.1
4,861,360 + -0.0
4,861,360 + -1.4
4,861,361 - -2.0
4,861,361 - +1.0
4,861,469 + -2.4
4,861,469 + -1.0
4,861,470 - -0.4
4,861,470 - +0.6
4,861,470 - +0.1
4,861,470 - +0.6
4,861,470 - +0.1
4,861,470 - +0.1
4,861,470 - +0.8
4,861,575 - -2.0
4,861,824 - Pf1N1B4_4402 0.28 +0.4
4,861,824 - Pf1N1B4_4402 0.28 -0.4
4,861,889 + Pf1N1B4_4402 0.36 +1.9
4,861,890 - +1.9
4,861,922 + Pf1N1B4_4402 0.39 -0.9
4,862,260 + Pf1N1B4_4402 0.77 +0.1

Or see this region's nucleotide sequence