Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4298 and Pf1N1B4_4299 are separated by 463 nucleotides Pf1N1B4_4299 and Pf1N1B4_4300 overlap by 4 nucleotides
Pf1N1B4_4298 - Mobile element protein, at 4,760,898 to 4,762,199
_4298
Pf1N1B4_4299 - sensor histidine kinase, at 4,762,663 to 4,763,973
_4299
Pf1N1B4_4300 - Transcriptional regulatory protein ompR, at 4,763,970 to 4,764,710
_4300
Position (kb)
4762
4763
4764 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4762.245 kb on + strand at 4762.245 kb on + strand at 4762.245 kb on + strand at 4762.245 kb on + strand at 4762.665 kb on - strand at 4763.380 kb on + strand, within Pf1N1B4_4299 at 4763.550 kb on + strand, within Pf1N1B4_4299 at 4763.723 kb on - strand, within Pf1N1B4_4299 at 4763.726 kb on + strand, within Pf1N1B4_4299 at 4763.726 kb on + strand, within Pf1N1B4_4299 at 4763.727 kb on - strand at 4763.727 kb on - strand, within Pf1N1B4_4299 at 4763.727 kb on - strand at 4763.727 kb on - strand, within Pf1N1B4_4299 at 4763.732 kb on + strand, within Pf1N1B4_4299 at 4763.733 kb on - strand, within Pf1N1B4_4299 at 4763.867 kb on + strand at 4763.868 kb on - strand at 4764.013 kb on + strand at 4764.013 kb on + strand at 4764.404 kb on - strand, within Pf1N1B4_4300 at 4764.784 kb on + strand at 4764.785 kb on - strand at 4764.785 kb on - strand at 4764.794 kb on + strand at 4764.794 kb on + strand at 4764.814 kb on - strand at 4764.861 kb on - strand at 4764.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,762,245 + +0.6 4,762,245 + -1.2 4,762,245 + +0.3 4,762,245 + -0.8 4,762,665 - +1.2 4,763,380 + Pf1N1B4_4299 0.55 -2.0 4,763,550 + Pf1N1B4_4299 0.68 -0.7 4,763,723 - Pf1N1B4_4299 0.81 -1.4 4,763,726 + Pf1N1B4_4299 0.81 -0.4 4,763,726 + Pf1N1B4_4299 0.81 -0.4 4,763,727 - -1.4 4,763,727 - Pf1N1B4_4299 0.81 -1.1 4,763,727 - -0.0 4,763,727 - Pf1N1B4_4299 0.81 -0.7 4,763,732 + Pf1N1B4_4299 0.82 -1.4 4,763,733 - Pf1N1B4_4299 0.82 -2.0 4,763,867 + +0.3 4,763,868 - +0.9 4,764,013 + +0.1 4,764,013 + +0.1 4,764,404 - Pf1N1B4_4300 0.59 +0.0 4,764,784 + +3.0 4,764,785 - +1.2 4,764,785 - -0.3 4,764,794 + -0.3 4,764,794 + -1.0 4,764,814 - +0.2 4,764,861 - -0.8 4,764,861 - +0.9
Or see this region's nucleotide sequence