Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3800 and Pf1N1B4_5229 are separated by 308 nucleotides Pf1N1B4_5229 and Pf1N1B4_3801 are separated by 321 nucleotides Pf1N1B4_3801 and Pf1N1B4_3802 are separated by 68 nucleotides Pf1N1B4_3802 and Pf1N1B4_3803 are separated by 734 nucleotides
Pf1N1B4_3800 - Enoyl-CoA hydratase/isomerase family protein, at 4,209,183 to 4,209,872
_3800
Pf1N1B4_5229 - tRNA-Ser-GGA, at 4,210,181 to 4,210,267
_5229
Pf1N1B4_3801 - hypothetical protein, at 4,210,589 to 4,210,786
_3801
Pf1N1B4_3802 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 4,210,855 to 4,211,175
_3802
Pf1N1B4_3803 - hypothetical protein, at 4,211,910 to 4,212,221
_3803
Position (kb)
4210
4211
4212 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4209.888 kb on - strand at 4209.888 kb on - strand at 4209.890 kb on + strand at 4209.891 kb on - strand at 4209.891 kb on - strand at 4209.928 kb on + strand at 4209.928 kb on + strand at 4210.010 kb on + strand at 4210.010 kb on + strand at 4210.010 kb on + strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.011 kb on - strand at 4210.013 kb on - strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.014 kb on + strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.015 kb on - strand at 4210.370 kb on + strand at 4210.370 kb on + strand at 4210.370 kb on + strand at 4210.370 kb on + strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.371 kb on - strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.399 kb on + strand at 4210.400 kb on - strand at 4210.400 kb on - strand at 4210.426 kb on + strand at 4210.426 kb on + strand at 4210.426 kb on + strand at 4210.427 kb on - strand at 4210.427 kb on - strand at 4210.499 kb on + strand at 4210.499 kb on + strand at 4210.500 kb on - strand at 4210.588 kb on + strand at 4210.729 kb on + strand, within Pf1N1B4_3801 at 4210.730 kb on - strand, within Pf1N1B4_3801 at 4210.744 kb on + strand, within Pf1N1B4_3801 at 4210.745 kb on - strand, within Pf1N1B4_3801 at 4210.784 kb on + strand at 4210.785 kb on - strand at 4210.838 kb on - strand at 4210.903 kb on + strand, within Pf1N1B4_3802 at 4210.904 kb on - strand, within Pf1N1B4_3802 at 4210.904 kb on - strand at 4210.958 kb on + strand, within Pf1N1B4_3802 at 4210.958 kb on + strand, within Pf1N1B4_3802 at 4210.958 kb on + strand at 4210.959 kb on - strand, within Pf1N1B4_3802 at 4211.098 kb on + strand, within Pf1N1B4_3802 at 4211.173 kb on + strand at 4211.173 kb on + strand at 4211.173 kb on + strand at 4211.174 kb on - strand at 4211.205 kb on + strand at 4211.205 kb on + strand at 4211.205 kb on + strand at 4211.205 kb on + strand at 4211.280 kb on + strand at 4211.280 kb on + strand at 4211.281 kb on - strand at 4211.321 kb on + strand at 4211.335 kb on - strand at 4211.369 kb on + strand at 4211.397 kb on + strand at 4211.397 kb on + strand at 4211.397 kb on + strand at 4211.397 kb on + strand at 4211.398 kb on - strand at 4211.423 kb on + strand at 4211.447 kb on + strand at 4211.447 kb on + strand at 4211.448 kb on - strand at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.607 kb on + strand at 4211.608 kb on - strand at 4211.648 kb on + strand at 4211.648 kb on + strand at 4211.649 kb on - strand at 4211.649 kb on - strand at 4211.649 kb on - strand at 4211.652 kb on + strand at 4211.652 kb on + strand at 4211.653 kb on - strand at 4211.653 kb on - strand at 4211.653 kb on - strand at 4211.670 kb on + strand at 4211.722 kb on + strand at 4211.722 kb on + strand at 4211.734 kb on + strand at 4211.736 kb on + strand at 4211.737 kb on - strand at 4211.802 kb on + strand at 4211.802 kb on + strand at 4211.802 kb on + strand at 4211.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,209,888 - -1.0 4,209,888 - -0.2 4,209,890 + -0.4 4,209,891 - -0.2 4,209,891 - -0.2 4,209,928 + -0.2 4,209,928 + -0.8 4,210,010 + +3.0 4,210,010 + +1.6 4,210,010 + -0.5 4,210,011 - -2.1 4,210,011 - +1.8 4,210,011 - -1.4 4,210,011 - -1.2 4,210,011 - +0.1 4,210,011 - -0.5 4,210,013 - -0.1 4,210,014 + +0.8 4,210,014 + +1.8 4,210,014 + -1.8 4,210,014 + +2.1 4,210,014 + +0.8 4,210,014 + +1.1 4,210,014 + +2.1 4,210,015 - -0.5 4,210,015 - +1.8 4,210,015 - +0.3 4,210,015 - -0.2 4,210,015 - +0.5 4,210,015 - +0.8 4,210,015 - -1.8 4,210,015 - +0.1 4,210,015 - +0.1 4,210,015 - +0.6 4,210,370 + -0.5 4,210,370 + -0.6 4,210,370 + +0.5 4,210,370 + +0.4 4,210,371 - -1.8 4,210,371 - -0.2 4,210,371 - +0.8 4,210,371 - -0.2 4,210,371 - +0.8 4,210,399 + -1.2 4,210,399 + -0.2 4,210,399 + +2.8 4,210,399 + +0.2 4,210,399 + -0.9 4,210,399 + -0.2 4,210,400 - -0.8 4,210,400 - -1.2 4,210,426 + +1.4 4,210,426 + +2.1 4,210,426 + +0.8 4,210,427 - +1.0 4,210,427 - +1.1 4,210,499 + +2.4 4,210,499 + -0.2 4,210,500 - +1.6 4,210,588 + +2.1 4,210,729 + Pf1N1B4_3801 0.71 -2.2 4,210,730 - Pf1N1B4_3801 0.71 -1.4 4,210,744 + Pf1N1B4_3801 0.78 +0.8 4,210,745 - Pf1N1B4_3801 0.79 -1.4 4,210,784 + -0.2 4,210,785 - -0.9 4,210,838 - -0.2 4,210,903 + Pf1N1B4_3802 0.15 -2.0 4,210,904 - Pf1N1B4_3802 0.15 +1.5 4,210,904 - -1.8 4,210,958 + Pf1N1B4_3802 0.32 -0.2 4,210,958 + Pf1N1B4_3802 0.32 +2.1 4,210,958 + +0.8 4,210,959 - Pf1N1B4_3802 0.32 +1.8 4,211,098 + Pf1N1B4_3802 0.76 +0.1 4,211,173 + +0.1 4,211,173 + -0.5 4,211,173 + -0.2 4,211,174 - +0.8 4,211,205 + +0.0 4,211,205 + -0.7 4,211,205 + +0.1 4,211,205 + +0.2 4,211,280 + -0.2 4,211,280 + +1.4 4,211,281 - +1.5 4,211,321 + +0.2 4,211,335 - -1.2 4,211,369 + +0.4 4,211,397 + +1.4 4,211,397 + -0.8 4,211,397 + -1.2 4,211,397 + +0.4 4,211,398 - +1.8 4,211,423 + +2.0 4,211,447 + +0.2 4,211,447 + +1.7 4,211,448 - -0.2 4,211,514 + +0.4 4,211,514 + +1.7 4,211,514 + +0.4 4,211,514 + -0.1 4,211,607 + -0.2 4,211,608 - -1.4 4,211,648 + +1.2 4,211,648 + -1.2 4,211,649 - -0.2 4,211,649 - +0.4 4,211,649 - -0.2 4,211,652 + +0.8 4,211,652 + -0.5 4,211,653 - +0.3 4,211,653 - -0.2 4,211,653 - -1.8 4,211,670 + +0.3 4,211,722 + +0.3 4,211,722 + -0.1 4,211,734 + +0.1 4,211,736 + +1.4 4,211,737 - +0.5 4,211,802 + +0.8 4,211,802 + -0.6 4,211,802 + +1.4 4,211,927 + -2.2
Or see this region's nucleotide sequence