Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3771 and Pf1N1B4_3772 are separated by 195 nucleotides Pf1N1B4_3772 and Pf1N1B4_3773 are separated by 102 nucleotides Pf1N1B4_3773 and Pf1N1B4_3774 are separated by 77 nucleotides
Pf1N1B4_3771 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 4,181,685 to 4,182,851
_3771
Pf1N1B4_3772 - Glutaredoxin, at 4,183,047 to 4,183,418
_3772
Pf1N1B4_3773 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 4,183,521 to 4,184,066
_3773
Pf1N1B4_3774 - Smr domain protein, at 4,184,144 to 4,184,701
_3774
Position (kb) 4183
4184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4182.339 kb on + strand, within Pf1N1B4_3771 at 4182.339 kb on + strand, within Pf1N1B4_3771 at 4182.340 kb on - strand, within Pf1N1B4_3771 at 4182.504 kb on + strand, within Pf1N1B4_3771 at 4182.504 kb on + strand, within Pf1N1B4_3771 at 4182.505 kb on - strand, within Pf1N1B4_3771 at 4182.869 kb on + strand at 4182.892 kb on - strand at 4182.982 kb on + strand at 4182.983 kb on - strand at 4182.983 kb on - strand at 4182.987 kb on + strand at 4182.988 kb on - strand at 4182.988 kb on - strand at 4182.988 kb on - strand at 4182.988 kb on - strand at 4183.099 kb on + strand, within Pf1N1B4_3772 at 4183.099 kb on + strand, within Pf1N1B4_3772 at 4183.099 kb on + strand, within Pf1N1B4_3772 at 4183.099 kb on + strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.100 kb on - strand, within Pf1N1B4_3772 at 4183.282 kb on + strand, within Pf1N1B4_3772 at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.423 kb on + strand at 4183.423 kb on + strand at 4183.423 kb on + strand at 4183.458 kb on - strand at 4183.459 kb on - strand at 4183.522 kb on + strand at 4184.187 kb on + strand at 4184.331 kb on - strand, within Pf1N1B4_3774 at 4184.331 kb on - strand, within Pf1N1B4_3774
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,182,339 + Pf1N1B4_3771 0.56 -0.2 4,182,339 + Pf1N1B4_3771 0.56 +0.4 4,182,340 - Pf1N1B4_3771 0.56 -0.2 4,182,504 + Pf1N1B4_3771 0.70 +0.2 4,182,504 + Pf1N1B4_3771 0.70 -1.2 4,182,505 - Pf1N1B4_3771 0.70 -2.5 4,182,869 + -0.6 4,182,892 - +2.4 4,182,982 + +0.8 4,182,983 - +0.4 4,182,983 - +1.1 4,182,987 + -0.4 4,182,988 - +3.0 4,182,988 - +0.8 4,182,988 - -0.9 4,182,988 - -1.2 4,183,099 + Pf1N1B4_3772 0.14 -0.4 4,183,099 + Pf1N1B4_3772 0.14 -2.2 4,183,099 + Pf1N1B4_3772 0.14 -0.2 4,183,099 + Pf1N1B4_3772 0.14 -0.6 4,183,100 - Pf1N1B4_3772 0.14 +2.0 4,183,100 - Pf1N1B4_3772 0.14 -1.2 4,183,100 - Pf1N1B4_3772 0.14 +1.1 4,183,100 - -1.2 4,183,100 - Pf1N1B4_3772 0.14 +0.8 4,183,100 - Pf1N1B4_3772 0.14 +1.4 4,183,100 - Pf1N1B4_3772 0.14 -1.2 4,183,100 - Pf1N1B4_3772 0.14 +0.5 4,183,100 - Pf1N1B4_3772 0.14 +2.2 4,183,100 - Pf1N1B4_3772 0.14 -0.8 4,183,100 - Pf1N1B4_3772 0.14 -0.6 4,183,282 + Pf1N1B4_3772 0.63 +0.4 4,183,421 + +0.1 4,183,421 + +1.4 4,183,421 + -0.5 4,183,421 + +1.8 4,183,421 + +0.6 4,183,421 + +1.0 4,183,421 + +0.3 4,183,421 + +0.2 4,183,421 + +2.7 4,183,421 + +1.4 4,183,421 + +0.4 4,183,422 - -0.4 4,183,422 - +1.8 4,183,422 - +0.3 4,183,422 - +0.6 4,183,422 - +0.1 4,183,422 - -0.2 4,183,422 - +1.4 4,183,422 - -2.5 4,183,423 + +1.4 4,183,423 + +0.4 4,183,423 + -1.8 4,183,458 - +1.4 4,183,459 - +0.8 4,183,522 + -0.2 4,184,187 + -0.2 4,184,331 - Pf1N1B4_3774 0.34 +1.7 4,184,331 - Pf1N1B4_3774 0.34 +1.8
Or see this region's nucleotide sequence