Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3610

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3607 and Pf1N1B4_3608 are separated by 6 nucleotidesPf1N1B4_3608 and Pf1N1B4_3609 are separated by 218 nucleotidesPf1N1B4_3609 and Pf1N1B4_3610 are separated by 5 nucleotidesPf1N1B4_3610 and Pf1N1B4_3611 are separated by 31 nucleotidesPf1N1B4_3611 and Pf1N1B4_3612 are separated by 83 nucleotides Pf1N1B4_3607 - Flagellum-specific ATP synthase FliI, at 4,018,073 to 4,019,431 _3607 Pf1N1B4_3608 - Flagellar protein FliJ, at 4,019,438 to 4,019,887 _3608 Pf1N1B4_3609 - Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV, at 4,020,106 to 4,020,411 _3609 Pf1N1B4_3610 - Serine phosphatase RsbU, regulator of sigma subunit, at 4,020,417 to 4,022,120 _3610 Pf1N1B4_3611 - Hpt domain protein, at 4,022,152 to 4,022,520 _3611 Pf1N1B4_3612 - Flagellar hook-length control protein FliK, at 4,022,604 to 4,023,965 _3612 Position (kb) 4020 4021 4022 4023Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4019.589 kb on - strand, within Pf1N1B4_3608at 4019.719 kb on + strand, within Pf1N1B4_3608at 4019.720 kb on - strand, within Pf1N1B4_3608at 4019.882 kb on + strandat 4019.934 kb on - strandat 4019.980 kb on - strandat 4020.066 kb on + strandat 4020.066 kb on + strandat 4020.066 kb on + strandat 4020.067 kb on - strandat 4020.067 kb on - strandat 4020.067 kb on - strandat 4020.072 kb on + strandat 4020.072 kb on + strandat 4020.072 kb on + strandat 4020.073 kb on - strandat 4020.073 kb on - strandat 4020.073 kb on - strandat 4020.073 kb on - strandat 4020.073 kb on - strandat 4020.125 kb on + strandat 4020.126 kb on - strandat 4020.126 kb on - strandat 4020.126 kb on - strandat 4020.126 kb on - strandat 4020.126 kb on - strandat 4020.205 kb on + strand, within Pf1N1B4_3609at 4020.206 kb on - strand, within Pf1N1B4_3609at 4020.206 kb on - strand, within Pf1N1B4_3609at 4020.206 kb on - strand, within Pf1N1B4_3609at 4020.262 kb on + strand, within Pf1N1B4_3609at 4020.262 kb on + strand, within Pf1N1B4_3609at 4020.263 kb on - strand, within Pf1N1B4_3609at 4020.263 kb on - strand, within Pf1N1B4_3609at 4020.263 kb on - strand, within Pf1N1B4_3609at 4020.263 kb on - strand, within Pf1N1B4_3609at 4020.442 kb on + strandat 4020.747 kb on + strand, within Pf1N1B4_3610at 4020.748 kb on - strand, within Pf1N1B4_3610at 4020.852 kb on + strand, within Pf1N1B4_3610at 4020.852 kb on + strand, within Pf1N1B4_3610at 4020.853 kb on - strand, within Pf1N1B4_3610at 4020.853 kb on - strand, within Pf1N1B4_3610at 4020.853 kb on - strand, within Pf1N1B4_3610at 4020.937 kb on - strand, within Pf1N1B4_3610at 4020.951 kb on + strand, within Pf1N1B4_3610at 4021.084 kb on - strand, within Pf1N1B4_3610at 4021.084 kb on - strand, within Pf1N1B4_3610at 4021.084 kb on - strand, within Pf1N1B4_3610at 4021.084 kb on - strand, within Pf1N1B4_3610at 4021.084 kb on - strand, within Pf1N1B4_3610at 4021.151 kb on + strand, within Pf1N1B4_3610at 4021.152 kb on - strand, within Pf1N1B4_3610at 4021.152 kb on - strand, within Pf1N1B4_3610at 4021.152 kb on - strandat 4021.152 kb on - strand, within Pf1N1B4_3610at 4021.436 kb on - strandat 4021.600 kb on - strand, within Pf1N1B4_3610at 4021.689 kb on + strandat 4021.689 kb on + strand, within Pf1N1B4_3610at 4021.746 kb on + strand, within Pf1N1B4_3610at 4021.746 kb on + strand, within Pf1N1B4_3610at 4021.747 kb on - strand, within Pf1N1B4_3610at 4021.845 kb on + strand, within Pf1N1B4_3610at 4021.887 kb on + strand, within Pf1N1B4_3610at 4021.887 kb on + strand, within Pf1N1B4_3610at 4021.888 kb on - strand, within Pf1N1B4_3610at 4021.888 kb on - strandat 4022.313 kb on + strandat 4022.325 kb on + strand, within Pf1N1B4_3611at 4022.325 kb on + strand, within Pf1N1B4_3611at 4022.464 kb on + strand, within Pf1N1B4_3611at 4022.518 kb on + strandat 4022.561 kb on + strandat 4022.571 kb on + strandat 4022.572 kb on - strandat 4022.575 kb on + strandat 4022.575 kb on + strandat 4022.575 kb on + strandat 4022.727 kb on + strandat 4022.727 kb on + strandat 4022.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,019,589 - Pf1N1B4_3608 0.34 +2.2
4,019,719 + Pf1N1B4_3608 0.62 -0.4
4,019,720 - Pf1N1B4_3608 0.63 +0.2
4,019,882 + +0.3
4,019,934 - +0.3
4,019,980 - +0.1
4,020,066 + -0.1
4,020,066 + +0.7
4,020,066 + -0.6
4,020,067 - +0.6
4,020,067 - +1.4
4,020,067 - -1.7
4,020,072 + -1.7
4,020,072 + +2.2
4,020,072 + +1.2
4,020,073 - -2.1
4,020,073 - +0.4
4,020,073 - -1.1
4,020,073 - -1.1
4,020,073 - +0.5
4,020,125 + -0.4
4,020,126 - -0.1
4,020,126 - -0.1
4,020,126 - +1.4
4,020,126 - -0.3
4,020,126 - +0.1
4,020,205 + Pf1N1B4_3609 0.32 -0.1
4,020,206 - Pf1N1B4_3609 0.33 -2.1
4,020,206 - Pf1N1B4_3609 0.33 -0.8
4,020,206 - Pf1N1B4_3609 0.33 -0.5
4,020,262 + Pf1N1B4_3609 0.51 +2.7
4,020,262 + Pf1N1B4_3609 0.51 -1.0
4,020,263 - Pf1N1B4_3609 0.51 +0.1
4,020,263 - Pf1N1B4_3609 0.51 +1.4
4,020,263 - Pf1N1B4_3609 0.51 +0.1
4,020,263 - Pf1N1B4_3609 0.51 +0.3
4,020,442 + -1.7
4,020,747 + Pf1N1B4_3610 0.19 -0.1
4,020,748 - Pf1N1B4_3610 0.19 +0.4
4,020,852 + Pf1N1B4_3610 0.26 +0.7
4,020,852 + Pf1N1B4_3610 0.26 +1.4
4,020,853 - Pf1N1B4_3610 0.26 -0.1
4,020,853 - Pf1N1B4_3610 0.26 -2.5
4,020,853 - Pf1N1B4_3610 0.26 +0.0
4,020,937 - Pf1N1B4_3610 0.31 -1.5
4,020,951 + Pf1N1B4_3610 0.31 +1.3
4,021,084 - Pf1N1B4_3610 0.39 +0.9
4,021,084 - Pf1N1B4_3610 0.39 -0.1
4,021,084 - Pf1N1B4_3610 0.39 +0.3
4,021,084 - Pf1N1B4_3610 0.39 +0.9
4,021,084 - Pf1N1B4_3610 0.39 +2.9
4,021,151 + Pf1N1B4_3610 0.43 +1.6
4,021,152 - Pf1N1B4_3610 0.43 +1.2
4,021,152 - Pf1N1B4_3610 0.43 +0.2
4,021,152 - -1.1
4,021,152 - Pf1N1B4_3610 0.43 +0.4
4,021,436 - -1.7
4,021,600 - Pf1N1B4_3610 0.69 -0.1
4,021,689 + -0.7
4,021,689 + Pf1N1B4_3610 0.75 +1.4
4,021,746 + Pf1N1B4_3610 0.78 +1.4
4,021,746 + Pf1N1B4_3610 0.78 +1.1
4,021,747 - Pf1N1B4_3610 0.78 -0.6
4,021,845 + Pf1N1B4_3610 0.84 +1.7
4,021,887 + Pf1N1B4_3610 0.86 +0.4
4,021,887 + Pf1N1B4_3610 0.86 +1.4
4,021,888 - Pf1N1B4_3610 0.86 -1.1
4,021,888 - -0.1
4,022,313 + +0.9
4,022,325 + Pf1N1B4_3611 0.47 -2.1
4,022,325 + Pf1N1B4_3611 0.47 -0.7
4,022,464 + Pf1N1B4_3611 0.85 -0.6
4,022,518 + -1.7
4,022,561 + -1.1
4,022,571 + -0.1
4,022,572 - +0.9
4,022,575 + +0.0
4,022,575 + +0.9
4,022,575 + -2.5
4,022,727 + +1.2
4,022,727 + +1.3
4,022,728 - -0.1

Or see this region's nucleotide sequence