Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3607 and Pf1N1B4_3608 are separated by 6 nucleotides Pf1N1B4_3608 and Pf1N1B4_3609 are separated by 218 nucleotides Pf1N1B4_3609 and Pf1N1B4_3610 are separated by 5 nucleotides Pf1N1B4_3610 and Pf1N1B4_3611 are separated by 31 nucleotides Pf1N1B4_3611 and Pf1N1B4_3612 are separated by 83 nucleotides
Pf1N1B4_3607 - Flagellum-specific ATP synthase FliI, at 4,018,073 to 4,019,431
_3607
Pf1N1B4_3608 - Flagellar protein FliJ, at 4,019,438 to 4,019,887
_3608
Pf1N1B4_3609 - Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV, at 4,020,106 to 4,020,411
_3609
Pf1N1B4_3610 - Serine phosphatase RsbU, regulator of sigma subunit, at 4,020,417 to 4,022,120
_3610
Pf1N1B4_3611 - Hpt domain protein, at 4,022,152 to 4,022,520
_3611
Pf1N1B4_3612 - Flagellar hook-length control protein FliK, at 4,022,604 to 4,023,965
_3612
Position (kb)
4020
4021
4022
4023 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4019.589 kb on - strand, within Pf1N1B4_3608 at 4019.719 kb on + strand, within Pf1N1B4_3608 at 4019.720 kb on - strand, within Pf1N1B4_3608 at 4019.882 kb on + strand at 4019.934 kb on - strand at 4019.980 kb on - strand at 4020.066 kb on + strand at 4020.066 kb on + strand at 4020.066 kb on + strand at 4020.067 kb on - strand at 4020.067 kb on - strand at 4020.067 kb on - strand at 4020.072 kb on + strand at 4020.072 kb on + strand at 4020.072 kb on + strand at 4020.073 kb on - strand at 4020.073 kb on - strand at 4020.073 kb on - strand at 4020.073 kb on - strand at 4020.073 kb on - strand at 4020.125 kb on + strand at 4020.126 kb on - strand at 4020.126 kb on - strand at 4020.126 kb on - strand at 4020.126 kb on - strand at 4020.126 kb on - strand at 4020.205 kb on + strand, within Pf1N1B4_3609 at 4020.206 kb on - strand, within Pf1N1B4_3609 at 4020.206 kb on - strand, within Pf1N1B4_3609 at 4020.206 kb on - strand, within Pf1N1B4_3609 at 4020.262 kb on + strand, within Pf1N1B4_3609 at 4020.262 kb on + strand, within Pf1N1B4_3609 at 4020.263 kb on - strand, within Pf1N1B4_3609 at 4020.263 kb on - strand, within Pf1N1B4_3609 at 4020.263 kb on - strand, within Pf1N1B4_3609 at 4020.263 kb on - strand, within Pf1N1B4_3609 at 4020.442 kb on + strand at 4020.747 kb on + strand, within Pf1N1B4_3610 at 4020.748 kb on - strand, within Pf1N1B4_3610 at 4020.852 kb on + strand, within Pf1N1B4_3610 at 4020.852 kb on + strand, within Pf1N1B4_3610 at 4020.853 kb on - strand, within Pf1N1B4_3610 at 4020.853 kb on - strand, within Pf1N1B4_3610 at 4020.853 kb on - strand, within Pf1N1B4_3610 at 4020.937 kb on - strand, within Pf1N1B4_3610 at 4020.951 kb on + strand, within Pf1N1B4_3610 at 4021.084 kb on - strand, within Pf1N1B4_3610 at 4021.084 kb on - strand, within Pf1N1B4_3610 at 4021.084 kb on - strand, within Pf1N1B4_3610 at 4021.084 kb on - strand, within Pf1N1B4_3610 at 4021.084 kb on - strand, within Pf1N1B4_3610 at 4021.151 kb on + strand, within Pf1N1B4_3610 at 4021.152 kb on - strand, within Pf1N1B4_3610 at 4021.152 kb on - strand, within Pf1N1B4_3610 at 4021.152 kb on - strand at 4021.152 kb on - strand, within Pf1N1B4_3610 at 4021.436 kb on - strand at 4021.600 kb on - strand, within Pf1N1B4_3610 at 4021.689 kb on + strand at 4021.689 kb on + strand, within Pf1N1B4_3610 at 4021.746 kb on + strand, within Pf1N1B4_3610 at 4021.746 kb on + strand, within Pf1N1B4_3610 at 4021.747 kb on - strand, within Pf1N1B4_3610 at 4021.845 kb on + strand, within Pf1N1B4_3610 at 4021.887 kb on + strand, within Pf1N1B4_3610 at 4021.887 kb on + strand, within Pf1N1B4_3610 at 4021.888 kb on - strand, within Pf1N1B4_3610 at 4021.888 kb on - strand at 4022.313 kb on + strand at 4022.325 kb on + strand, within Pf1N1B4_3611 at 4022.325 kb on + strand, within Pf1N1B4_3611 at 4022.464 kb on + strand, within Pf1N1B4_3611 at 4022.518 kb on + strand at 4022.561 kb on + strand at 4022.571 kb on + strand at 4022.572 kb on - strand at 4022.575 kb on + strand at 4022.575 kb on + strand at 4022.575 kb on + strand at 4022.727 kb on + strand at 4022.727 kb on + strand at 4022.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,019,589 - Pf1N1B4_3608 0.34 +2.2 4,019,719 + Pf1N1B4_3608 0.62 -0.4 4,019,720 - Pf1N1B4_3608 0.63 +0.2 4,019,882 + +0.3 4,019,934 - +0.3 4,019,980 - +0.1 4,020,066 + -0.1 4,020,066 + +0.7 4,020,066 + -0.6 4,020,067 - +0.6 4,020,067 - +1.4 4,020,067 - -1.7 4,020,072 + -1.7 4,020,072 + +2.2 4,020,072 + +1.2 4,020,073 - -2.1 4,020,073 - +0.4 4,020,073 - -1.1 4,020,073 - -1.1 4,020,073 - +0.5 4,020,125 + -0.4 4,020,126 - -0.1 4,020,126 - -0.1 4,020,126 - +1.4 4,020,126 - -0.3 4,020,126 - +0.1 4,020,205 + Pf1N1B4_3609 0.32 -0.1 4,020,206 - Pf1N1B4_3609 0.33 -2.1 4,020,206 - Pf1N1B4_3609 0.33 -0.8 4,020,206 - Pf1N1B4_3609 0.33 -0.5 4,020,262 + Pf1N1B4_3609 0.51 +2.7 4,020,262 + Pf1N1B4_3609 0.51 -1.0 4,020,263 - Pf1N1B4_3609 0.51 +0.1 4,020,263 - Pf1N1B4_3609 0.51 +1.4 4,020,263 - Pf1N1B4_3609 0.51 +0.1 4,020,263 - Pf1N1B4_3609 0.51 +0.3 4,020,442 + -1.7 4,020,747 + Pf1N1B4_3610 0.19 -0.1 4,020,748 - Pf1N1B4_3610 0.19 +0.4 4,020,852 + Pf1N1B4_3610 0.26 +0.7 4,020,852 + Pf1N1B4_3610 0.26 +1.4 4,020,853 - Pf1N1B4_3610 0.26 -0.1 4,020,853 - Pf1N1B4_3610 0.26 -2.5 4,020,853 - Pf1N1B4_3610 0.26 +0.0 4,020,937 - Pf1N1B4_3610 0.31 -1.5 4,020,951 + Pf1N1B4_3610 0.31 +1.3 4,021,084 - Pf1N1B4_3610 0.39 +0.9 4,021,084 - Pf1N1B4_3610 0.39 -0.1 4,021,084 - Pf1N1B4_3610 0.39 +0.3 4,021,084 - Pf1N1B4_3610 0.39 +0.9 4,021,084 - Pf1N1B4_3610 0.39 +2.9 4,021,151 + Pf1N1B4_3610 0.43 +1.6 4,021,152 - Pf1N1B4_3610 0.43 +1.2 4,021,152 - Pf1N1B4_3610 0.43 +0.2 4,021,152 - -1.1 4,021,152 - Pf1N1B4_3610 0.43 +0.4 4,021,436 - -1.7 4,021,600 - Pf1N1B4_3610 0.69 -0.1 4,021,689 + -0.7 4,021,689 + Pf1N1B4_3610 0.75 +1.4 4,021,746 + Pf1N1B4_3610 0.78 +1.4 4,021,746 + Pf1N1B4_3610 0.78 +1.1 4,021,747 - Pf1N1B4_3610 0.78 -0.6 4,021,845 + Pf1N1B4_3610 0.84 +1.7 4,021,887 + Pf1N1B4_3610 0.86 +0.4 4,021,887 + Pf1N1B4_3610 0.86 +1.4 4,021,888 - Pf1N1B4_3610 0.86 -1.1 4,021,888 - -0.1 4,022,313 + +0.9 4,022,325 + Pf1N1B4_3611 0.47 -2.1 4,022,325 + Pf1N1B4_3611 0.47 -0.7 4,022,464 + Pf1N1B4_3611 0.85 -0.6 4,022,518 + -1.7 4,022,561 + -1.1 4,022,571 + -0.1 4,022,572 - +0.9 4,022,575 + +0.0 4,022,575 + +0.9 4,022,575 + -2.5 4,022,727 + +1.2 4,022,727 + +1.3 4,022,728 - -0.1
Or see this region's nucleotide sequence