Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3034

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3033 and Pf1N1B4_3034 overlap by 1 nucleotidesPf1N1B4_3034 and Pf1N1B4_3035 overlap by 4 nucleotides Pf1N1B4_3033 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 3,413,550 to 3,415,172 _3033 Pf1N1B4_3034 - Chemotaxis signal transduction protein, at 3,415,172 to 3,415,708 _3034 Pf1N1B4_3035 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,415,705 to 3,416,994 _3035 Position (kb) 3415 3416Strain fitness (log2 ratio) -2 -1 0 1 2at 3414.750 kb on + strand, within Pf1N1B4_3033at 3414.819 kb on + strand, within Pf1N1B4_3033at 3414.819 kb on + strand, within Pf1N1B4_3033at 3414.819 kb on + strand, within Pf1N1B4_3033at 3414.820 kb on - strand, within Pf1N1B4_3033at 3414.820 kb on - strandat 3414.820 kb on - strand, within Pf1N1B4_3033at 3414.820 kb on - strand, within Pf1N1B4_3033at 3414.820 kb on - strand, within Pf1N1B4_3033at 3415.606 kb on - strand, within Pf1N1B4_3034at 3415.606 kb on - strand, within Pf1N1B4_3034at 3415.659 kb on + strandat 3415.659 kb on + strandat 3415.660 kb on - strandat 3415.660 kb on - strandat 3415.660 kb on - strandat 3415.746 kb on + strandat 3415.747 kb on - strandat 3415.747 kb on - strandat 3415.840 kb on + strandat 3415.841 kb on - strand, within Pf1N1B4_3035at 3415.841 kb on - strand, within Pf1N1B4_3035at 3415.841 kb on - strand, within Pf1N1B4_3035at 3415.984 kb on - strand, within Pf1N1B4_3035at 3416.023 kb on - strand, within Pf1N1B4_3035at 3416.038 kb on + strand, within Pf1N1B4_3035at 3416.039 kb on - strand, within Pf1N1B4_3035at 3416.146 kb on + strand, within Pf1N1B4_3035at 3416.147 kb on - strand, within Pf1N1B4_3035at 3416.147 kb on - strand, within Pf1N1B4_3035at 3416.147 kb on - strand, within Pf1N1B4_3035at 3416.219 kb on - strand, within Pf1N1B4_3035at 3416.219 kb on - strand, within Pf1N1B4_3035at 3416.219 kb on - strand, within Pf1N1B4_3035at 3416.219 kb on - strand, within Pf1N1B4_3035at 3416.305 kb on + strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.306 kb on - strand, within Pf1N1B4_3035at 3416.338 kb on + strand, within Pf1N1B4_3035at 3416.338 kb on + strand, within Pf1N1B4_3035at 3416.338 kb on + strand, within Pf1N1B4_3035at 3416.339 kb on - strand, within Pf1N1B4_3035at 3416.339 kb on - strand, within Pf1N1B4_3035

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,414,750 + Pf1N1B4_3033 0.74 -1.2
3,414,819 + Pf1N1B4_3033 0.78 +0.1
3,414,819 + Pf1N1B4_3033 0.78 +1.2
3,414,819 + Pf1N1B4_3033 0.78 +0.1
3,414,820 - Pf1N1B4_3033 0.78 +1.5
3,414,820 - -0.9
3,414,820 - Pf1N1B4_3033 0.78 +0.7
3,414,820 - Pf1N1B4_3033 0.78 +1.3
3,414,820 - Pf1N1B4_3033 0.78 -1.9
3,415,606 - Pf1N1B4_3034 0.81 +1.1
3,415,606 - Pf1N1B4_3034 0.81 +0.1
3,415,659 + -0.2
3,415,659 + +0.1
3,415,660 - -0.7
3,415,660 - -0.2
3,415,660 - +2.1
3,415,746 + +0.1
3,415,747 - -0.5
3,415,747 - +1.1
3,415,840 + -0.9
3,415,841 - Pf1N1B4_3035 0.11 +0.1
3,415,841 - Pf1N1B4_3035 0.11 +0.7
3,415,841 - Pf1N1B4_3035 0.11 +1.7
3,415,984 - Pf1N1B4_3035 0.22 +2.7
3,416,023 - Pf1N1B4_3035 0.25 -0.9
3,416,038 + Pf1N1B4_3035 0.26 +0.4
3,416,039 - Pf1N1B4_3035 0.26 +0.6
3,416,146 + Pf1N1B4_3035 0.34 +1.1
3,416,147 - Pf1N1B4_3035 0.34 +1.1
3,416,147 - Pf1N1B4_3035 0.34 -0.9
3,416,147 - Pf1N1B4_3035 0.34 -1.2
3,416,219 - Pf1N1B4_3035 0.40 -2.3
3,416,219 - Pf1N1B4_3035 0.40 -1.5
3,416,219 - Pf1N1B4_3035 0.40 -0.0
3,416,219 - Pf1N1B4_3035 0.40 -0.4
3,416,305 + Pf1N1B4_3035 0.47 -1.0
3,416,306 - Pf1N1B4_3035 0.47 +0.3
3,416,306 - Pf1N1B4_3035 0.47 +0.1
3,416,306 - Pf1N1B4_3035 0.47 +0.4
3,416,306 - Pf1N1B4_3035 0.47 -1.7
3,416,306 - Pf1N1B4_3035 0.47 +2.7
3,416,306 - Pf1N1B4_3035 0.47 +0.8
3,416,306 - Pf1N1B4_3035 0.47 +0.0
3,416,338 + Pf1N1B4_3035 0.49 +0.8
3,416,338 + Pf1N1B4_3035 0.49 -0.9
3,416,338 + Pf1N1B4_3035 0.49 -0.9
3,416,339 - Pf1N1B4_3035 0.49 +0.4
3,416,339 - Pf1N1B4_3035 0.49 +0.1

Or see this region's nucleotide sequence