Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2069

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2068 and Pf1N1B4_2069 are separated by 6 nucleotidesPf1N1B4_2069 and Pf1N1B4_2070 overlap by 4 nucleotides Pf1N1B4_2068 - Uncharacterized protein ImpJ/VasE, at 2,360,422 to 2,361,756 _2068 Pf1N1B4_2069 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 2,361,763 to 2,363,061 _2069 Pf1N1B4_2070 - IcmF-related protein, at 2,363,058 to 2,366,558 _2070 Position (kb) 2361 2362 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2360.792 kb on - strand, within Pf1N1B4_2068at 2360.792 kb on - strand, within Pf1N1B4_2068at 2360.977 kb on + strandat 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2361.208 kb on + strand, within Pf1N1B4_2068at 2361.209 kb on - strand, within Pf1N1B4_2068at 2361.209 kb on - strand, within Pf1N1B4_2068at 2361.209 kb on - strand, within Pf1N1B4_2068at 2361.250 kb on - strand, within Pf1N1B4_2068at 2361.250 kb on - strand, within Pf1N1B4_2068at 2361.278 kb on - strand, within Pf1N1B4_2068at 2361.400 kb on + strand, within Pf1N1B4_2068at 2361.400 kb on + strand, within Pf1N1B4_2068at 2361.401 kb on - strand, within Pf1N1B4_2068at 2361.567 kb on - strand, within Pf1N1B4_2068at 2361.567 kb on - strand, within Pf1N1B4_2068at 2361.634 kb on + strandat 2361.634 kb on + strandat 2361.635 kb on - strandat 2361.635 kb on - strandat 2361.635 kb on - strandat 2361.635 kb on - strandat 2361.635 kb on - strandat 2361.637 kb on + strandat 2361.637 kb on + strandat 2361.638 kb on - strandat 2361.638 kb on - strandat 2361.638 kb on - strandat 2361.701 kb on - strandat 2361.701 kb on - strandat 2361.701 kb on - strandat 2361.701 kb on - strandat 2361.701 kb on - strandat 2362.004 kb on + strand, within Pf1N1B4_2069at 2362.005 kb on - strand, within Pf1N1B4_2069at 2362.013 kb on - strand, within Pf1N1B4_2069at 2362.119 kb on + strand, within Pf1N1B4_2069at 2362.120 kb on - strand, within Pf1N1B4_2069at 2362.120 kb on - strand, within Pf1N1B4_2069at 2362.249 kb on + strand, within Pf1N1B4_2069at 2362.250 kb on - strand, within Pf1N1B4_2069at 2362.250 kb on - strand, within Pf1N1B4_2069at 2362.250 kb on - strand, within Pf1N1B4_2069at 2362.250 kb on - strand, within Pf1N1B4_2069at 2362.268 kb on - strand, within Pf1N1B4_2069at 2362.384 kb on + strand, within Pf1N1B4_2069at 2362.549 kb on - strand, within Pf1N1B4_2069at 2362.554 kb on + strand, within Pf1N1B4_2069at 2362.555 kb on - strand, within Pf1N1B4_2069at 2362.996 kb on - strandat 2363.078 kb on + strandat 2363.079 kb on - strandat 2363.413 kb on - strand, within Pf1N1B4_2070at 2363.428 kb on - strand, within Pf1N1B4_2070at 2363.428 kb on - strand, within Pf1N1B4_2070at 2363.428 kb on - strand, within Pf1N1B4_2070at 2363.428 kb on - strand, within Pf1N1B4_2070at 2363.428 kb on - strand, within Pf1N1B4_2070at 2363.602 kb on - strand, within Pf1N1B4_2070at 2363.796 kb on + strand, within Pf1N1B4_2070at 2363.797 kb on - strand, within Pf1N1B4_2070at 2363.797 kb on - strand, within Pf1N1B4_2070at 2363.797 kb on - strand, within Pf1N1B4_2070at 2363.826 kb on + strand, within Pf1N1B4_2070at 2363.826 kb on + strand, within Pf1N1B4_2070at 2363.871 kb on + strand, within Pf1N1B4_2070at 2363.871 kb on + strand, within Pf1N1B4_2070at 2363.871 kb on + strandat 2363.871 kb on + strand, within Pf1N1B4_2070at 2363.871 kb on + strand, within Pf1N1B4_2070at 2363.872 kb on - strand, within Pf1N1B4_2070at 2363.872 kb on - strand, within Pf1N1B4_2070at 2363.872 kb on - strand, within Pf1N1B4_2070

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,360,792 - Pf1N1B4_2068 0.28 +0.4
2,360,792 - Pf1N1B4_2068 0.28 +0.4
2,360,977 + +0.4
2,360,977 + Pf1N1B4_2068 0.42 -0.2
2,360,977 + Pf1N1B4_2068 0.42 +3.0
2,360,977 + Pf1N1B4_2068 0.42 -1.9
2,360,977 + Pf1N1B4_2068 0.42 +1.4
2,360,977 + Pf1N1B4_2068 0.42 -0.3
2,360,977 + Pf1N1B4_2068 0.42 -1.0
2,360,977 + Pf1N1B4_2068 0.42 +0.6
2,360,978 - Pf1N1B4_2068 0.42 -0.3
2,360,978 - Pf1N1B4_2068 0.42 -1.2
2,360,978 - Pf1N1B4_2068 0.42 +1.4
2,360,978 - Pf1N1B4_2068 0.42 +0.8
2,360,978 - Pf1N1B4_2068 0.42 +0.8
2,360,978 - Pf1N1B4_2068 0.42 +0.4
2,360,978 - Pf1N1B4_2068 0.42 +0.5
2,360,978 - Pf1N1B4_2068 0.42 +0.4
2,360,978 - Pf1N1B4_2068 0.42 +0.4
2,360,978 - Pf1N1B4_2068 0.42 -2.2
2,360,978 - Pf1N1B4_2068 0.42 +0.8
2,361,208 + Pf1N1B4_2068 0.59 -2.6
2,361,209 - Pf1N1B4_2068 0.59 +2.0
2,361,209 - Pf1N1B4_2068 0.59 -0.7
2,361,209 - Pf1N1B4_2068 0.59 +0.4
2,361,250 - Pf1N1B4_2068 0.62 -0.4
2,361,250 - Pf1N1B4_2068 0.62 -2.1
2,361,278 - Pf1N1B4_2068 0.64 -1.4
2,361,400 + Pf1N1B4_2068 0.73 -2.2
2,361,400 + Pf1N1B4_2068 0.73 +0.4
2,361,401 - Pf1N1B4_2068 0.73 +1.4
2,361,567 - Pf1N1B4_2068 0.86 +0.3
2,361,567 - Pf1N1B4_2068 0.86 +0.3
2,361,634 + -0.0
2,361,634 + +0.4
2,361,635 - -0.0
2,361,635 - +2.0
2,361,635 - +0.4
2,361,635 - -0.1
2,361,635 - +0.6
2,361,637 + +0.4
2,361,637 + +0.4
2,361,638 - -0.8
2,361,638 - -1.6
2,361,638 - -1.6
2,361,701 - -0.0
2,361,701 - +1.5
2,361,701 - +1.3
2,361,701 - +2.0
2,361,701 - +1.4
2,362,004 + Pf1N1B4_2069 0.19 +0.8
2,362,005 - Pf1N1B4_2069 0.19 +1.1
2,362,013 - Pf1N1B4_2069 0.19 -0.6
2,362,119 + Pf1N1B4_2069 0.27 -0.6
2,362,120 - Pf1N1B4_2069 0.27 -2.6
2,362,120 - Pf1N1B4_2069 0.27 -0.6
2,362,249 + Pf1N1B4_2069 0.37 +0.4
2,362,250 - Pf1N1B4_2069 0.37 -0.6
2,362,250 - Pf1N1B4_2069 0.37 +0.8
2,362,250 - Pf1N1B4_2069 0.37 -1.0
2,362,250 - Pf1N1B4_2069 0.37 -1.1
2,362,268 - Pf1N1B4_2069 0.39 -1.6
2,362,384 + Pf1N1B4_2069 0.48 -1.2
2,362,549 - Pf1N1B4_2069 0.61 +0.4
2,362,554 + Pf1N1B4_2069 0.61 -1.6
2,362,555 - Pf1N1B4_2069 0.61 -1.0
2,362,996 - +2.3
2,363,078 + +0.4
2,363,079 - -0.1
2,363,413 - Pf1N1B4_2070 0.10 +1.0
2,363,428 - Pf1N1B4_2070 0.11 -0.5
2,363,428 - Pf1N1B4_2070 0.11 +0.7
2,363,428 - Pf1N1B4_2070 0.11 +0.1
2,363,428 - Pf1N1B4_2070 0.11 +1.4
2,363,428 - Pf1N1B4_2070 0.11 -2.2
2,363,602 - Pf1N1B4_2070 0.16 -1.2
2,363,796 + Pf1N1B4_2070 0.21 +1.4
2,363,797 - Pf1N1B4_2070 0.21 +0.8
2,363,797 - Pf1N1B4_2070 0.21 -0.6
2,363,797 - Pf1N1B4_2070 0.21 +0.4
2,363,826 + Pf1N1B4_2070 0.22 -0.3
2,363,826 + Pf1N1B4_2070 0.22 -0.6
2,363,871 + Pf1N1B4_2070 0.23 -0.2
2,363,871 + Pf1N1B4_2070 0.23 +0.4
2,363,871 + +0.7
2,363,871 + Pf1N1B4_2070 0.23 -0.6
2,363,871 + Pf1N1B4_2070 0.23 +1.4
2,363,872 - Pf1N1B4_2070 0.23 +1.0
2,363,872 - Pf1N1B4_2070 0.23 +0.4
2,363,872 - Pf1N1B4_2070 0.23 -1.2

Or see this region's nucleotide sequence