Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2068 and Pf1N1B4_2069 are separated by 6 nucleotides Pf1N1B4_2069 and Pf1N1B4_2070 overlap by 4 nucleotides
Pf1N1B4_2068 - Uncharacterized protein ImpJ/VasE, at 2,360,422 to 2,361,756
_2068
Pf1N1B4_2069 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 2,361,763 to 2,363,061
_2069
Pf1N1B4_2070 - IcmF-related protein, at 2,363,058 to 2,366,558
_2070
Position (kb)
2361
2362
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2360.792 kb on - strand, within Pf1N1B4_2068 at 2360.792 kb on - strand, within Pf1N1B4_2068 at 2360.977 kb on + strand at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2361.208 kb on + strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.250 kb on - strand, within Pf1N1B4_2068 at 2361.250 kb on - strand, within Pf1N1B4_2068 at 2361.278 kb on - strand, within Pf1N1B4_2068 at 2361.400 kb on + strand, within Pf1N1B4_2068 at 2361.400 kb on + strand, within Pf1N1B4_2068 at 2361.401 kb on - strand, within Pf1N1B4_2068 at 2361.567 kb on - strand, within Pf1N1B4_2068 at 2361.567 kb on - strand, within Pf1N1B4_2068 at 2361.634 kb on + strand at 2361.634 kb on + strand at 2361.635 kb on - strand at 2361.635 kb on - strand at 2361.635 kb on - strand at 2361.635 kb on - strand at 2361.635 kb on - strand at 2361.637 kb on + strand at 2361.637 kb on + strand at 2361.638 kb on - strand at 2361.638 kb on - strand at 2361.638 kb on - strand at 2361.701 kb on - strand at 2361.701 kb on - strand at 2361.701 kb on - strand at 2361.701 kb on - strand at 2361.701 kb on - strand at 2362.004 kb on + strand, within Pf1N1B4_2069 at 2362.005 kb on - strand, within Pf1N1B4_2069 at 2362.013 kb on - strand, within Pf1N1B4_2069 at 2362.119 kb on + strand, within Pf1N1B4_2069 at 2362.120 kb on - strand, within Pf1N1B4_2069 at 2362.120 kb on - strand, within Pf1N1B4_2069 at 2362.249 kb on + strand, within Pf1N1B4_2069 at 2362.250 kb on - strand, within Pf1N1B4_2069 at 2362.250 kb on - strand, within Pf1N1B4_2069 at 2362.250 kb on - strand, within Pf1N1B4_2069 at 2362.250 kb on - strand, within Pf1N1B4_2069 at 2362.268 kb on - strand, within Pf1N1B4_2069 at 2362.384 kb on + strand, within Pf1N1B4_2069 at 2362.549 kb on - strand, within Pf1N1B4_2069 at 2362.554 kb on + strand, within Pf1N1B4_2069 at 2362.555 kb on - strand, within Pf1N1B4_2069 at 2362.996 kb on - strand at 2363.078 kb on + strand at 2363.079 kb on - strand at 2363.413 kb on - strand, within Pf1N1B4_2070 at 2363.428 kb on - strand, within Pf1N1B4_2070 at 2363.428 kb on - strand, within Pf1N1B4_2070 at 2363.428 kb on - strand, within Pf1N1B4_2070 at 2363.428 kb on - strand, within Pf1N1B4_2070 at 2363.428 kb on - strand, within Pf1N1B4_2070 at 2363.602 kb on - strand, within Pf1N1B4_2070 at 2363.796 kb on + strand, within Pf1N1B4_2070 at 2363.797 kb on - strand, within Pf1N1B4_2070 at 2363.797 kb on - strand, within Pf1N1B4_2070 at 2363.797 kb on - strand, within Pf1N1B4_2070 at 2363.826 kb on + strand, within Pf1N1B4_2070 at 2363.826 kb on + strand, within Pf1N1B4_2070 at 2363.871 kb on + strand, within Pf1N1B4_2070 at 2363.871 kb on + strand, within Pf1N1B4_2070 at 2363.871 kb on + strand at 2363.871 kb on + strand, within Pf1N1B4_2070 at 2363.871 kb on + strand, within Pf1N1B4_2070 at 2363.872 kb on - strand, within Pf1N1B4_2070 at 2363.872 kb on - strand, within Pf1N1B4_2070 at 2363.872 kb on - strand, within Pf1N1B4_2070
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,360,792 - Pf1N1B4_2068 0.28 +0.4 2,360,792 - Pf1N1B4_2068 0.28 +0.4 2,360,977 + +0.4 2,360,977 + Pf1N1B4_2068 0.42 -0.2 2,360,977 + Pf1N1B4_2068 0.42 +3.0 2,360,977 + Pf1N1B4_2068 0.42 -1.9 2,360,977 + Pf1N1B4_2068 0.42 +1.4 2,360,977 + Pf1N1B4_2068 0.42 -0.3 2,360,977 + Pf1N1B4_2068 0.42 -1.0 2,360,977 + Pf1N1B4_2068 0.42 +0.6 2,360,978 - Pf1N1B4_2068 0.42 -0.3 2,360,978 - Pf1N1B4_2068 0.42 -1.2 2,360,978 - Pf1N1B4_2068 0.42 +1.4 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 +0.5 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 -2.2 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,361,208 + Pf1N1B4_2068 0.59 -2.6 2,361,209 - Pf1N1B4_2068 0.59 +2.0 2,361,209 - Pf1N1B4_2068 0.59 -0.7 2,361,209 - Pf1N1B4_2068 0.59 +0.4 2,361,250 - Pf1N1B4_2068 0.62 -0.4 2,361,250 - Pf1N1B4_2068 0.62 -2.1 2,361,278 - Pf1N1B4_2068 0.64 -1.4 2,361,400 + Pf1N1B4_2068 0.73 -2.2 2,361,400 + Pf1N1B4_2068 0.73 +0.4 2,361,401 - Pf1N1B4_2068 0.73 +1.4 2,361,567 - Pf1N1B4_2068 0.86 +0.3 2,361,567 - Pf1N1B4_2068 0.86 +0.3 2,361,634 + -0.0 2,361,634 + +0.4 2,361,635 - -0.0 2,361,635 - +2.0 2,361,635 - +0.4 2,361,635 - -0.1 2,361,635 - +0.6 2,361,637 + +0.4 2,361,637 + +0.4 2,361,638 - -0.8 2,361,638 - -1.6 2,361,638 - -1.6 2,361,701 - -0.0 2,361,701 - +1.5 2,361,701 - +1.3 2,361,701 - +2.0 2,361,701 - +1.4 2,362,004 + Pf1N1B4_2069 0.19 +0.8 2,362,005 - Pf1N1B4_2069 0.19 +1.1 2,362,013 - Pf1N1B4_2069 0.19 -0.6 2,362,119 + Pf1N1B4_2069 0.27 -0.6 2,362,120 - Pf1N1B4_2069 0.27 -2.6 2,362,120 - Pf1N1B4_2069 0.27 -0.6 2,362,249 + Pf1N1B4_2069 0.37 +0.4 2,362,250 - Pf1N1B4_2069 0.37 -0.6 2,362,250 - Pf1N1B4_2069 0.37 +0.8 2,362,250 - Pf1N1B4_2069 0.37 -1.0 2,362,250 - Pf1N1B4_2069 0.37 -1.1 2,362,268 - Pf1N1B4_2069 0.39 -1.6 2,362,384 + Pf1N1B4_2069 0.48 -1.2 2,362,549 - Pf1N1B4_2069 0.61 +0.4 2,362,554 + Pf1N1B4_2069 0.61 -1.6 2,362,555 - Pf1N1B4_2069 0.61 -1.0 2,362,996 - +2.3 2,363,078 + +0.4 2,363,079 - -0.1 2,363,413 - Pf1N1B4_2070 0.10 +1.0 2,363,428 - Pf1N1B4_2070 0.11 -0.5 2,363,428 - Pf1N1B4_2070 0.11 +0.7 2,363,428 - Pf1N1B4_2070 0.11 +0.1 2,363,428 - Pf1N1B4_2070 0.11 +1.4 2,363,428 - Pf1N1B4_2070 0.11 -2.2 2,363,602 - Pf1N1B4_2070 0.16 -1.2 2,363,796 + Pf1N1B4_2070 0.21 +1.4 2,363,797 - Pf1N1B4_2070 0.21 +0.8 2,363,797 - Pf1N1B4_2070 0.21 -0.6 2,363,797 - Pf1N1B4_2070 0.21 +0.4 2,363,826 + Pf1N1B4_2070 0.22 -0.3 2,363,826 + Pf1N1B4_2070 0.22 -0.6 2,363,871 + Pf1N1B4_2070 0.23 -0.2 2,363,871 + Pf1N1B4_2070 0.23 +0.4 2,363,871 + +0.7 2,363,871 + Pf1N1B4_2070 0.23 -0.6 2,363,871 + Pf1N1B4_2070 0.23 +1.4 2,363,872 - Pf1N1B4_2070 0.23 +1.0 2,363,872 - Pf1N1B4_2070 0.23 +0.4 2,363,872 - Pf1N1B4_2070 0.23 -1.2
Or see this region's nucleotide sequence