Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2066 and Pf1N1B4_2067 are separated by 75 nucleotides Pf1N1B4_2067 and Pf1N1B4_2068 are separated by 15 nucleotides
Pf1N1B4_2066 - Uncharacterized protein ImpI/VasC, at 2,358,412 to 2,359,818
_2066
Pf1N1B4_2067 - Type VI secretion lipoprotein/VasD, at 2,359,894 to 2,360,406
_2067
Pf1N1B4_2068 - Uncharacterized protein ImpJ/VasE, at 2,360,422 to 2,361,756
_2068
Position (kb)
2359
2360
2361 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2359.105 kb on - strand, within Pf1N1B4_2066 at 2359.127 kb on + strand, within Pf1N1B4_2066 at 2359.142 kb on + strand, within Pf1N1B4_2066 at 2359.690 kb on + strand at 2359.714 kb on + strand at 2359.722 kb on + strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.784 kb on - strand at 2359.797 kb on + strand at 2359.797 kb on + strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.833 kb on + strand at 2359.834 kb on - strand at 2359.834 kb on - strand at 2359.846 kb on - strand at 2359.846 kb on - strand at 2360.082 kb on + strand, within Pf1N1B4_2067 at 2360.083 kb on - strand, within Pf1N1B4_2067 at 2360.126 kb on - strand, within Pf1N1B4_2067 at 2360.327 kb on - strand, within Pf1N1B4_2067 at 2360.327 kb on - strand, within Pf1N1B4_2067 at 2360.405 kb on - strand at 2360.498 kb on - strand at 2360.716 kb on + strand, within Pf1N1B4_2068 at 2360.716 kb on + strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.792 kb on - strand, within Pf1N1B4_2068 at 2360.792 kb on - strand, within Pf1N1B4_2068 at 2360.977 kb on + strand at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2361.208 kb on + strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.250 kb on - strand, within Pf1N1B4_2068 at 2361.250 kb on - strand, within Pf1N1B4_2068 at 2361.278 kb on - strand, within Pf1N1B4_2068 at 2361.400 kb on + strand, within Pf1N1B4_2068 at 2361.400 kb on + strand, within Pf1N1B4_2068 at 2361.401 kb on - strand, within Pf1N1B4_2068
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,359,105 - Pf1N1B4_2066 0.49 +0.4 2,359,127 + Pf1N1B4_2066 0.51 -1.6 2,359,142 + Pf1N1B4_2066 0.52 -0.4 2,359,690 + -0.1 2,359,714 + +0.6 2,359,722 + -0.5 2,359,723 - +0.4 2,359,723 - +1.0 2,359,723 - +1.7 2,359,723 - +1.4 2,359,723 - +1.0 2,359,723 - +0.1 2,359,784 - +0.8 2,359,797 + -1.2 2,359,797 + -0.0 2,359,798 - +2.1 2,359,798 - -0.3 2,359,798 - -0.6 2,359,798 - +0.4 2,359,798 - +0.6 2,359,798 - +2.0 2,359,798 - +0.4 2,359,798 - +0.0 2,359,798 - -0.9 2,359,833 + +1.7 2,359,834 - +0.1 2,359,834 - +0.7 2,359,846 - +0.4 2,359,846 - -0.7 2,360,082 + Pf1N1B4_2067 0.37 +0.8 2,360,083 - Pf1N1B4_2067 0.37 +1.2 2,360,126 - Pf1N1B4_2067 0.45 +0.5 2,360,327 - Pf1N1B4_2067 0.84 +0.1 2,360,327 - Pf1N1B4_2067 0.84 +0.4 2,360,405 - +0.4 2,360,498 - +0.6 2,360,716 + Pf1N1B4_2068 0.22 -0.1 2,360,716 + Pf1N1B4_2068 0.22 +1.2 2,360,755 - Pf1N1B4_2068 0.25 -0.7 2,360,755 - Pf1N1B4_2068 0.25 -0.0 2,360,755 - Pf1N1B4_2068 0.25 +0.1 2,360,755 - Pf1N1B4_2068 0.25 +0.7 2,360,792 - Pf1N1B4_2068 0.28 +0.4 2,360,792 - Pf1N1B4_2068 0.28 +0.4 2,360,977 + +0.4 2,360,977 + Pf1N1B4_2068 0.42 -0.2 2,360,977 + Pf1N1B4_2068 0.42 +3.0 2,360,977 + Pf1N1B4_2068 0.42 -1.9 2,360,977 + Pf1N1B4_2068 0.42 +1.4 2,360,977 + Pf1N1B4_2068 0.42 -0.3 2,360,977 + Pf1N1B4_2068 0.42 -1.0 2,360,977 + Pf1N1B4_2068 0.42 +0.6 2,360,978 - Pf1N1B4_2068 0.42 -0.3 2,360,978 - Pf1N1B4_2068 0.42 -1.2 2,360,978 - Pf1N1B4_2068 0.42 +1.4 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 +0.5 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 -2.2 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,361,208 + Pf1N1B4_2068 0.59 -2.6 2,361,209 - Pf1N1B4_2068 0.59 +2.0 2,361,209 - Pf1N1B4_2068 0.59 -0.7 2,361,209 - Pf1N1B4_2068 0.59 +0.4 2,361,250 - Pf1N1B4_2068 0.62 -0.4 2,361,250 - Pf1N1B4_2068 0.62 -2.1 2,361,278 - Pf1N1B4_2068 0.64 -1.4 2,361,400 + Pf1N1B4_2068 0.73 -2.2 2,361,400 + Pf1N1B4_2068 0.73 +0.4 2,361,401 - Pf1N1B4_2068 0.73 +1.4
Or see this region's nucleotide sequence