Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2067

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2066 and Pf1N1B4_2067 are separated by 75 nucleotidesPf1N1B4_2067 and Pf1N1B4_2068 are separated by 15 nucleotides Pf1N1B4_2066 - Uncharacterized protein ImpI/VasC, at 2,358,412 to 2,359,818 _2066 Pf1N1B4_2067 - Type VI secretion lipoprotein/VasD, at 2,359,894 to 2,360,406 _2067 Pf1N1B4_2068 - Uncharacterized protein ImpJ/VasE, at 2,360,422 to 2,361,756 _2068 Position (kb) 2359 2360 2361Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2359.105 kb on - strand, within Pf1N1B4_2066at 2359.127 kb on + strand, within Pf1N1B4_2066at 2359.142 kb on + strand, within Pf1N1B4_2066at 2359.690 kb on + strandat 2359.714 kb on + strandat 2359.722 kb on + strandat 2359.723 kb on - strandat 2359.723 kb on - strandat 2359.723 kb on - strandat 2359.723 kb on - strandat 2359.723 kb on - strandat 2359.723 kb on - strandat 2359.784 kb on - strandat 2359.797 kb on + strandat 2359.797 kb on + strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.798 kb on - strandat 2359.833 kb on + strandat 2359.834 kb on - strandat 2359.834 kb on - strandat 2359.846 kb on - strandat 2359.846 kb on - strandat 2360.082 kb on + strand, within Pf1N1B4_2067at 2360.083 kb on - strand, within Pf1N1B4_2067at 2360.126 kb on - strand, within Pf1N1B4_2067at 2360.327 kb on - strand, within Pf1N1B4_2067at 2360.327 kb on - strand, within Pf1N1B4_2067at 2360.405 kb on - strandat 2360.498 kb on - strandat 2360.716 kb on + strand, within Pf1N1B4_2068at 2360.716 kb on + strand, within Pf1N1B4_2068at 2360.755 kb on - strand, within Pf1N1B4_2068at 2360.755 kb on - strand, within Pf1N1B4_2068at 2360.755 kb on - strand, within Pf1N1B4_2068at 2360.755 kb on - strand, within Pf1N1B4_2068at 2360.792 kb on - strand, within Pf1N1B4_2068at 2360.792 kb on - strand, within Pf1N1B4_2068at 2360.977 kb on + strandat 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.977 kb on + strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2360.978 kb on - strand, within Pf1N1B4_2068at 2361.208 kb on + strand, within Pf1N1B4_2068at 2361.209 kb on - strand, within Pf1N1B4_2068at 2361.209 kb on - strand, within Pf1N1B4_2068at 2361.209 kb on - strand, within Pf1N1B4_2068at 2361.250 kb on - strand, within Pf1N1B4_2068at 2361.250 kb on - strand, within Pf1N1B4_2068at 2361.278 kb on - strand, within Pf1N1B4_2068at 2361.400 kb on + strand, within Pf1N1B4_2068at 2361.400 kb on + strand, within Pf1N1B4_2068at 2361.401 kb on - strand, within Pf1N1B4_2068

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,359,105 - Pf1N1B4_2066 0.49 +0.4
2,359,127 + Pf1N1B4_2066 0.51 -1.6
2,359,142 + Pf1N1B4_2066 0.52 -0.4
2,359,690 + -0.1
2,359,714 + +0.6
2,359,722 + -0.5
2,359,723 - +0.4
2,359,723 - +1.0
2,359,723 - +1.7
2,359,723 - +1.4
2,359,723 - +1.0
2,359,723 - +0.1
2,359,784 - +0.8
2,359,797 + -1.2
2,359,797 + -0.0
2,359,798 - +2.1
2,359,798 - -0.3
2,359,798 - -0.6
2,359,798 - +0.4
2,359,798 - +0.6
2,359,798 - +2.0
2,359,798 - +0.4
2,359,798 - +0.0
2,359,798 - -0.9
2,359,833 + +1.7
2,359,834 - +0.1
2,359,834 - +0.7
2,359,846 - +0.4
2,359,846 - -0.7
2,360,082 + Pf1N1B4_2067 0.37 +0.8
2,360,083 - Pf1N1B4_2067 0.37 +1.2
2,360,126 - Pf1N1B4_2067 0.45 +0.5
2,360,327 - Pf1N1B4_2067 0.84 +0.1
2,360,327 - Pf1N1B4_2067 0.84 +0.4
2,360,405 - +0.4
2,360,498 - +0.6
2,360,716 + Pf1N1B4_2068 0.22 -0.1
2,360,716 + Pf1N1B4_2068 0.22 +1.2
2,360,755 - Pf1N1B4_2068 0.25 -0.7
2,360,755 - Pf1N1B4_2068 0.25 -0.0
2,360,755 - Pf1N1B4_2068 0.25 +0.1
2,360,755 - Pf1N1B4_2068 0.25 +0.7
2,360,792 - Pf1N1B4_2068 0.28 +0.4
2,360,792 - Pf1N1B4_2068 0.28 +0.4
2,360,977 + +0.4
2,360,977 + Pf1N1B4_2068 0.42 -0.2
2,360,977 + Pf1N1B4_2068 0.42 +3.0
2,360,977 + Pf1N1B4_2068 0.42 -1.9
2,360,977 + Pf1N1B4_2068 0.42 +1.4
2,360,977 + Pf1N1B4_2068 0.42 -0.3
2,360,977 + Pf1N1B4_2068 0.42 -1.0
2,360,977 + Pf1N1B4_2068 0.42 +0.6
2,360,978 - Pf1N1B4_2068 0.42 -0.3
2,360,978 - Pf1N1B4_2068 0.42 -1.2
2,360,978 - Pf1N1B4_2068 0.42 +1.4
2,360,978 - Pf1N1B4_2068 0.42 +0.8
2,360,978 - Pf1N1B4_2068 0.42 +0.8
2,360,978 - Pf1N1B4_2068 0.42 +0.4
2,360,978 - Pf1N1B4_2068 0.42 +0.5
2,360,978 - Pf1N1B4_2068 0.42 +0.4
2,360,978 - Pf1N1B4_2068 0.42 +0.4
2,360,978 - Pf1N1B4_2068 0.42 -2.2
2,360,978 - Pf1N1B4_2068 0.42 +0.8
2,361,208 + Pf1N1B4_2068 0.59 -2.6
2,361,209 - Pf1N1B4_2068 0.59 +2.0
2,361,209 - Pf1N1B4_2068 0.59 -0.7
2,361,209 - Pf1N1B4_2068 0.59 +0.4
2,361,250 - Pf1N1B4_2068 0.62 -0.4
2,361,250 - Pf1N1B4_2068 0.62 -2.1
2,361,278 - Pf1N1B4_2068 0.64 -1.4
2,361,400 + Pf1N1B4_2068 0.73 -2.2
2,361,400 + Pf1N1B4_2068 0.73 +0.4
2,361,401 - Pf1N1B4_2068 0.73 +1.4

Or see this region's nucleotide sequence