Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_195

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_193 and Pf1N1B4_194 are separated by 101 nucleotidesPf1N1B4_194 and Pf1N1B4_195 are separated by 223 nucleotidesPf1N1B4_195 and Pf1N1B4_196 are separated by 335 nucleotides Pf1N1B4_193 - Transporter, LysE family, at 242,568 to 243,182 _193 Pf1N1B4_194 - ABC-type proline/glycine betaine transport systems, ATPase components, at 243,284 to 243,553 _194 Pf1N1B4_195 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 243,777 to 244,235 _195 Pf1N1B4_196 - FIG137594: Putative iron-regulated membrane protein, at 244,571 to 245,776 _196 Position (kb) 243 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 242.779 kb on + strand, within Pf1N1B4_193at 242.851 kb on + strand, within Pf1N1B4_193at 242.851 kb on + strand, within Pf1N1B4_193at 242.852 kb on - strand, within Pf1N1B4_193at 242.852 kb on - strand, within Pf1N1B4_193at 242.932 kb on + strand, within Pf1N1B4_193at 242.932 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.962 kb on + strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.963 kb on - strand, within Pf1N1B4_193at 242.974 kb on + strand, within Pf1N1B4_193at 242.974 kb on + strand, within Pf1N1B4_193at 242.974 kb on + strand, within Pf1N1B4_193at 242.975 kb on - strand, within Pf1N1B4_193at 243.211 kb on + strandat 243.212 kb on - strandat 243.272 kb on + strandat 243.308 kb on + strandat 243.309 kb on - strandat 243.396 kb on + strand, within Pf1N1B4_194at 243.465 kb on + strand, within Pf1N1B4_194at 243.466 kb on - strand, within Pf1N1B4_194at 243.466 kb on - strand, within Pf1N1B4_194at 243.617 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.713 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.715 kb on + strandat 243.719 kb on + strandat 243.719 kb on + strandat 243.784 kb on + strandat 243.804 kb on + strandat 243.822 kb on + strandat 243.826 kb on + strand, within Pf1N1B4_195at 243.826 kb on + strand, within Pf1N1B4_195at 243.938 kb on + strand, within Pf1N1B4_195at 243.938 kb on + strand, within Pf1N1B4_195at 243.939 kb on - strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.029 kb on + strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.030 kb on - strand, within Pf1N1B4_195at 244.055 kb on + strand, within Pf1N1B4_195at 244.111 kb on - strand, within Pf1N1B4_195at 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strandat 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strandat 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strand, within Pf1N1B4_195at 244.153 kb on + strand, within Pf1N1B4_195at 244.154 kb on - strand, within Pf1N1B4_195at 244.154 kb on - strand, within Pf1N1B4_195at 244.223 kb on + strandat 244.224 kb on - strandat 244.224 kb on - strandat 244.260 kb on + strandat 244.261 kb on - strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.400 kb on + strandat 244.418 kb on - strandat 244.453 kb on + strandat 244.454 kb on - strandat 244.464 kb on + strandat 244.567 kb on - strandat 244.612 kb on + strandat 244.613 kb on - strandat 244.644 kb on + strandat 244.757 kb on + strand, within Pf1N1B4_196at 244.758 kb on - strand, within Pf1N1B4_196at 244.889 kb on + strand, within Pf1N1B4_196at 244.889 kb on + strand, within Pf1N1B4_196at 244.889 kb on + strand, within Pf1N1B4_196at 244.890 kb on - strandat 244.890 kb on - strand, within Pf1N1B4_196at 244.890 kb on - strand, within Pf1N1B4_196

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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242,779 + Pf1N1B4_193 0.34 -0.6
242,851 + Pf1N1B4_193 0.46 +0.4
242,851 + Pf1N1B4_193 0.46 -1.2
242,852 - Pf1N1B4_193 0.46 -0.4
242,852 - Pf1N1B4_193 0.46 -0.6
242,932 + Pf1N1B4_193 0.59 -0.9
242,932 + Pf1N1B4_193 0.59 +0.2
242,962 + Pf1N1B4_193 0.64 -0.2
242,962 + Pf1N1B4_193 0.64 +0.2
242,962 + Pf1N1B4_193 0.64 -3.0
242,962 + Pf1N1B4_193 0.64 -1.5
242,962 + Pf1N1B4_193 0.64 -1.0
242,963 - Pf1N1B4_193 0.64 -1.2
242,963 - Pf1N1B4_193 0.64 +1.8
242,963 - Pf1N1B4_193 0.64 -1.6
242,963 - Pf1N1B4_193 0.64 +2.6
242,974 + Pf1N1B4_193 0.66 -0.8
242,974 + Pf1N1B4_193 0.66 -1.4
242,974 + Pf1N1B4_193 0.66 +1.8
242,975 - Pf1N1B4_193 0.66 -0.6
243,211 + +2.0
243,212 - -2.8
243,272 + -0.1
243,308 + -0.1
243,309 - +0.8
243,396 + Pf1N1B4_194 0.41 -0.2
243,465 + Pf1N1B4_194 0.67 -3.5
243,466 - Pf1N1B4_194 0.67 -1.0
243,466 - Pf1N1B4_194 0.67 +0.2
243,617 + +0.8
243,713 + +0.5
243,713 + -0.5
243,713 + -0.2
243,713 + -1.8
243,713 + -0.5
243,713 + +0.2
243,713 + -0.0
243,715 + +0.9
243,715 + -0.2
243,715 + -1.8
243,715 + -0.2
243,715 + +0.3
243,719 + -0.2
243,719 + -1.2
243,784 + -0.2
243,804 + +0.8
243,822 + -1.5
243,826 + Pf1N1B4_195 0.11 +1.8
243,826 + Pf1N1B4_195 0.11 -0.2
243,938 + Pf1N1B4_195 0.35 -0.2
243,938 + Pf1N1B4_195 0.35 +0.8
243,939 - Pf1N1B4_195 0.35 -0.8
244,029 + Pf1N1B4_195 0.55 -1.2
244,029 + Pf1N1B4_195 0.55 -2.0
244,029 + Pf1N1B4_195 0.55 -1.0
244,029 + Pf1N1B4_195 0.55 -0.6
244,030 - Pf1N1B4_195 0.55 -1.2
244,030 - Pf1N1B4_195 0.55 +0.4
244,030 - Pf1N1B4_195 0.55 -0.8
244,030 - Pf1N1B4_195 0.55 +0.8
244,055 + Pf1N1B4_195 0.61 -0.5
244,111 - Pf1N1B4_195 0.73 -0.5
244,153 + Pf1N1B4_195 0.82 +0.6
244,153 + -0.8
244,153 + Pf1N1B4_195 0.82 -0.5
244,153 + -1.2
244,153 + Pf1N1B4_195 0.82 -0.3
244,153 + Pf1N1B4_195 0.82 -0.7
244,153 + Pf1N1B4_195 0.82 -1.9
244,154 - Pf1N1B4_195 0.82 -0.6
244,154 - Pf1N1B4_195 0.82 -0.8
244,223 + +1.9
244,224 - -1.2
244,224 - -0.9
244,260 + +0.5
244,261 - -1.2
244,295 + -0.1
244,295 + -0.2
244,400 + -0.2
244,418 - -2.0
244,453 + -0.8
244,454 - -0.6
244,464 + +0.6
244,567 - +1.7
244,612 + -0.6
244,613 - +1.5
244,644 + -0.9
244,757 + Pf1N1B4_196 0.15 -0.0
244,758 - Pf1N1B4_196 0.16 -0.6
244,889 + Pf1N1B4_196 0.26 -0.7
244,889 + Pf1N1B4_196 0.26 -0.2
244,889 + Pf1N1B4_196 0.26 +0.4
244,890 - +2.1
244,890 - Pf1N1B4_196 0.26 +0.2
244,890 - Pf1N1B4_196 0.26 -0.6

Or see this region's nucleotide sequence