Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_156 and Pf1N1B4_157 are separated by 91 nucleotides Pf1N1B4_157 and Pf1N1B4_158 are separated by 37 nucleotides Pf1N1B4_158 and Pf1N1B4_159 are separated by 26 nucleotides
Pf1N1B4_156 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 198,975 to 199,967
_156
Pf1N1B4_157 - ThiJ/PfpI family protein, at 200,059 to 200,745
_157
Pf1N1B4_158 - FIG00456158: hypothetical protein, at 200,783 to 201,112
_158
Pf1N1B4_159 - Putative threonine efflux protein, at 201,139 to 201,768
_159
Position (kb)
200
201 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 199.531 kb on - strand, within Pf1N1B4_156 at 199.968 kb on - strand at 199.968 kb on - strand at 200.012 kb on - strand at 200.019 kb on + strand at 200.020 kb on - strand at 200.020 kb on - strand at 200.020 kb on - strand at 200.122 kb on + strand at 200.123 kb on - strand at 200.123 kb on - strand at 200.123 kb on - strand at 200.345 kb on - strand, within Pf1N1B4_157 at 200.345 kb on - strand, within Pf1N1B4_157 at 200.362 kb on - strand, within Pf1N1B4_157 at 200.599 kb on + strand, within Pf1N1B4_157 at 200.832 kb on + strand, within Pf1N1B4_158 at 200.833 kb on - strand, within Pf1N1B4_158 at 200.833 kb on - strand at 200.833 kb on - strand, within Pf1N1B4_158 at 200.935 kb on + strand, within Pf1N1B4_158 at 200.935 kb on + strand, within Pf1N1B4_158 at 200.956 kb on - strand at 200.959 kb on - strand, within Pf1N1B4_158 at 200.959 kb on - strand, within Pf1N1B4_158 at 200.959 kb on - strand, within Pf1N1B4_158 at 201.090 kb on + strand at 201.091 kb on - strand at 201.095 kb on - strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.109 kb on - strand at 201.109 kb on - strand at 201.231 kb on + strand at 201.255 kb on + strand, within Pf1N1B4_159 at 201.256 kb on - strand, within Pf1N1B4_159 at 201.392 kb on - strand, within Pf1N1B4_159 at 201.665 kb on + strand, within Pf1N1B4_159 at 201.666 kb on - strand, within Pf1N1B4_159
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 199,531 - Pf1N1B4_156 0.56 +1.1 199,968 - -0.0 199,968 - -0.2 200,012 - +0.8 200,019 + +1.5 200,020 - -2.2 200,020 - -0.6 200,020 - -0.2 200,122 + -0.3 200,123 - -0.7 200,123 - +1.8 200,123 - -0.2 200,345 - Pf1N1B4_157 0.42 +0.8 200,345 - Pf1N1B4_157 0.42 +0.2 200,362 - Pf1N1B4_157 0.44 +1.1 200,599 + Pf1N1B4_157 0.79 -0.7 200,832 + Pf1N1B4_158 0.15 -0.1 200,833 - Pf1N1B4_158 0.15 +0.8 200,833 - +0.8 200,833 - Pf1N1B4_158 0.15 -0.5 200,935 + Pf1N1B4_158 0.46 -0.2 200,935 + Pf1N1B4_158 0.46 -0.2 200,956 - -0.2 200,959 - Pf1N1B4_158 0.53 +0.2 200,959 - Pf1N1B4_158 0.53 -1.4 200,959 - Pf1N1B4_158 0.53 +0.2 201,090 + -0.2 201,091 - -0.2 201,095 - -1.6 201,108 + +0.0 201,108 + +0.5 201,108 + -0.2 201,108 + -0.7 201,108 + -0.4 201,109 - +0.0 201,109 - -1.6 201,231 + -0.2 201,255 + Pf1N1B4_159 0.18 -1.2 201,256 - Pf1N1B4_159 0.19 -0.2 201,392 - Pf1N1B4_159 0.40 +0.9 201,665 + Pf1N1B4_159 0.83 +1.1 201,666 - Pf1N1B4_159 0.84 +0.1
Or see this region's nucleotide sequence