Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12320

Experiment: Temperature shift 30_to_21; with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_21; with MOPS
2,733,354	+		PFLU_RS12310	0.79	+0.8
2,733,354	+		PFLU_RS12310	0.79	+1.2
2,733,354	+		PFLU_RS12310	0.79	+0.2
2,733,354	+		PFLU_RS12310	0.79	-0.3
2,733,355	-		PFLU_RS12310	0.79	+0.2
2,733,355	-		PFLU_RS12310	0.79	+0.8
2,733,403	+		PFLU_RS12310	0.82	+0.2
2,733,404	-		PFLU_RS12310	0.82	-0.6
2,733,404	-		PFLU_RS12310	0.82	-1.2
2,733,437	+		PFLU_RS12310	0.84	-0.2
2,733,438	-		PFLU_RS12310	0.84	-0.8
2,733,438	-		PFLU_RS12310	0.84	+0.3
2,733,468	+		PFLU_RS12310	0.86	+0.3
2,733,468	+		PFLU_RS12310	0.86	+1.8
2,733,468	+		PFLU_RS12310	0.86	-1.7
2,733,469	-		PFLU_RS12310	0.86	+2.8
2,733,469	-		PFLU_RS12310	0.86	-2.4
2,733,469	-		PFLU_RS12310	0.86	-0.8
2,733,500	-		PFLU_RS12310	0.88	-2.7
2,733,500	-		PFLU_RS12310	0.88	+0.7
2,733,500	-		PFLU_RS12310	0.88	+0.1
2,733,500	-		PFLU_RS12310	0.88	-0.2
2,733,503	+		PFLU_RS12310	0.88	-0.2
2,733,503	+		PFLU_RS12310	0.88	+2.1
2,733,503	+		PFLU_RS12310	0.88	+0.1
2,733,504	-		PFLU_RS12310	0.88	-0.7
2,733,504	-		PFLU_RS12310	0.88	+0.2
2,733,504	-		PFLU_RS12310	0.88	-1.0
2,733,504	-		PFLU_RS12310	0.88	+0.6
2,733,504	-		PFLU_RS12310	0.88	-2.1
2,733,527	-		PFLU_RS12310	0.90	+0.2
2,733,563	+				-1.1
2,733,563	+				-0.8
2,733,563	+				-1.0
2,733,563	+				-0.2
2,733,563	+				-1.4
2,733,564	-				+0.5
2,733,564	-				-0.5
2,733,564	-				-0.2
2,733,566	+				-1.6
2,733,566	+				+0.1
2,733,566	+				+0.2
2,733,566	+				-2.1
2,733,566	+				-0.6
2,733,567	-				+0.2
2,733,567	-				+0.8
2,733,567	-				-0.2
2,733,567	-				+0.4
2,733,567	-				+0.0
2,733,619	+				-1.6
2,733,620	-				-1.0
2,733,620	-				-0.5
2,733,620	-				+1.4
2,733,620	-				+0.1
2,733,620	-				+1.6
2,733,620	-				+0.1
2,733,680	+				+0.0
2,733,680	+				-0.8
2,733,681	-				-1.1
2,733,681	-				-0.9
2,733,684	+				-0.5
2,733,684	+				+0.9
2,733,684	+				+0.0
2,733,685	-				-1.1
2,733,685	-				+0.8
2,733,685	-				+2.1
2,733,685	-				+0.1
2,733,685	-				-0.8
2,733,685	-				+0.3
2,733,707	+				-1.0
2,733,707	+				-0.7
2,733,738	+				+1.0
2,733,738	+				+0.0
2,733,739	-				-1.4
2,733,739	-				+0.1
2,733,783	+		PFLU_RS12315	0.13	-0.2
2,733,784	-		PFLU_RS12315	0.13	+0.8
2,733,784	-		PFLU_RS12315	0.13	+1.1
2,733,831	+		PFLU_RS12315	0.20	-0.2
2,733,831	+		PFLU_RS12315	0.20	+0.2
2,733,831	+		PFLU_RS12315	0.20	-0.3
2,733,831	+		PFLU_RS12315	0.20	-0.8
2,733,831	+		PFLU_RS12315	0.20	-2.1
2,733,831	+		PFLU_RS12315	0.20	+0.8
2,733,831	+		PFLU_RS12315	0.20	+2.3
2,733,832	-		PFLU_RS12315	0.20	-0.1
2,733,832	-		PFLU_RS12315	0.20	+0.4
2,733,832	-		PFLU_RS12315	0.20	-0.2
2,733,832	-		PFLU_RS12315	0.20	-0.7
2,733,832	-		PFLU_RS12315	0.20	-0.0
2,733,894	+		PFLU_RS12315	0.30	+0.2
2,733,895	-		PFLU_RS12315	0.30	-0.1
2,733,895	-		PFLU_RS12315	0.30	-0.7
2,733,895	-		PFLU_RS12315	0.30	+1.7
2,733,910	+		PFLU_RS12315	0.32	-1.2
2,733,910	+		PFLU_RS12315	0.32	-1.2
2,733,911	-		PFLU_RS12315	0.32	-0.6
2,733,911	-		PFLU_RS12315	0.32	+0.3
2,733,911	-		PFLU_RS12315	0.32	-0.9
2,733,956	+		PFLU_RS12315	0.39	+1.1
2,733,985	+		PFLU_RS12315	0.44	-0.8
2,733,985	+		PFLU_RS12315	0.44	-0.9
2,733,985	+		PFLU_RS12315	0.44	-1.1
2,733,986	-		PFLU_RS12315	0.44	+0.1
2,733,986	-		PFLU_RS12315	0.44	-0.1
2,733,987	+		PFLU_RS12315	0.44	+0.5
2,733,987	+		PFLU_RS12315	0.44	+0.2
2,733,988	-		PFLU_RS12315	0.44	+0.3
2,733,988	-		PFLU_RS12315	0.44	-0.1
2,733,988	-		PFLU_RS12315	0.44	+1.3
2,733,988	-		PFLU_RS12315	0.44	-0.9
2,734,060	+		PFLU_RS12315	0.55	-1.1
2,734,060	+		PFLU_RS12315	0.55	-0.4
2,734,060	+		PFLU_RS12315	0.55	+0.5
2,734,060	+		PFLU_RS12315	0.55	-0.4
2,734,060	+		PFLU_RS12315	0.55	-0.1
2,734,060	+		PFLU_RS12315	0.55	-0.5
2,734,061	-		PFLU_RS12315	0.56	+0.0
2,734,061	-		PFLU_RS12315	0.56	+1.0
2,734,061	-		PFLU_RS12315	0.56	-0.7
2,734,061	-		PFLU_RS12315	0.56	-0.2
2,734,061	-		PFLU_RS12315	0.56	+0.8
2,734,061	-		PFLU_RS12315	0.56	-0.6
2,734,061	-		PFLU_RS12315	0.56	+0.8
2,734,061	-		PFLU_RS12315	0.56	-1.7
2,734,099	+		PFLU_RS12315	0.61	-1.2
2,734,108	+		PFLU_RS12315	0.63	-0.2
2,734,108	+		PFLU_RS12315	0.63	-0.2
2,734,108	+		PFLU_RS12315	0.63	-0.8
2,734,108	+		PFLU_RS12315	0.63	+0.4
2,734,108	+		PFLU_RS12315	0.63	-1.2
2,734,108	+		PFLU_RS12315	0.63	-0.8
2,734,108	+		PFLU_RS12315	0.63	+1.8
2,734,109	-		PFLU_RS12315	0.63	-0.2
2,734,109	-		PFLU_RS12315	0.63	+2.3
2,734,109	-		PFLU_RS12315	0.63	+0.5
2,734,109	-		PFLU_RS12315	0.63	-1.2
2,734,110	+		PFLU_RS12315	0.63	-1.2
2,734,110	+		PFLU_RS12315	0.63	+2.6
2,734,110	+		PFLU_RS12315	0.63	-0.2
2,734,111	-		PFLU_RS12315	0.63	+2.3
2,734,111	-		PFLU_RS12315	0.63	-0.8
2,734,111	-		PFLU_RS12315	0.63	+1.8
2,734,165	+		PFLU_RS12315	0.72	+3.6
2,734,165	+		PFLU_RS12315	0.72	+1.0
2,734,166	-		PFLU_RS12315	0.72	+0.3
2,734,166	-		PFLU_RS12315	0.72	-0.2
2,734,166	-		PFLU_RS12315	0.72	+0.3
2,734,166	-		PFLU_RS12315	0.72	+0.8
2,734,214	-		PFLU_RS12315	0.79	-1.1
2,734,215	+		PFLU_RS12315	0.79	-1.1
2,734,215	+		PFLU_RS12315	0.79	-0.2
2,734,232	-		PFLU_RS12315	0.82	+0.8
2,734,232	-		PFLU_RS12315	0.82	-1.1
2,734,232	-		PFLU_RS12315	0.82	+0.3
2,734,348	+				-0.0
2,734,349	-				+0.0
2,734,349	-				+0.9
2,734,349	-				-0.4
2,734,355	-				-0.2
2,734,355	-				+0.4
2,734,393	+				-1.4
2,734,394	-				+1.1
2,734,394	-				+0.9
2,734,394	-				-1.8
2,734,396	+				+0.6
2,734,396	+				+1.5
2,734,396	+				+0.3
2,734,396	+				+0.1
2,734,396	+				-0.8
2,734,397	-				+0.8
2,734,397	-				+0.8
2,734,397	-				+0.4
2,734,397	-				+1.1
2,734,397	-				+0.6
2,734,397	-				-1.9
2,734,397	-				+0.6
2,734,454	-				+0.5
2,734,588	+		PFLU_RS12320	0.21	+0.6
2,734,642	+		PFLU_RS12320	0.25	-1.8
2,734,642	+		PFLU_RS12320	0.25	+0.2
2,734,642	+		PFLU_RS12320	0.25	+1.5
2,734,642	+		PFLU_RS12320	0.25	+1.1
2,734,642	+		PFLU_RS12320	0.25	-0.1
2,734,642	+		PFLU_RS12320	0.25	-1.0
2,734,643	-		PFLU_RS12320	0.25	-0.1
2,734,643	-		PFLU_RS12320	0.25	-0.5
2,734,643	-		PFLU_RS12320	0.25	+0.8
2,734,643	-		PFLU_RS12320	0.25	+0.6
2,734,644	+		PFLU_RS12320	0.25	-0.6
2,734,644	+		PFLU_RS12320	0.25	-0.9
2,734,644	+		PFLU_RS12320	0.25	+0.6
2,734,765	+		PFLU_RS12320	0.35	-1.0
2,735,170	+		PFLU_RS12320	0.68	+0.4
2,735,170	+		PFLU_RS12320	0.68	+0.2
2,735,170	+		PFLU_RS12320	0.68	+0.2
2,735,170	+		PFLU_RS12320	0.68	+0.6
2,735,170	+		PFLU_RS12320	0.68	-1.9
2,735,170	+		PFLU_RS12320	0.68	+1.8
2,735,171	-		PFLU_RS12320	0.69	+1.0
2,735,171	-		PFLU_RS12320	0.69	-2.4
2,735,185	+		PFLU_RS12320	0.70	-0.0
2,735,249	-		PFLU_RS12320	0.75	-0.3
2,735,249	-		PFLU_RS12320	0.75	+0.2
2,735,512	+				-1.2
2,735,513	-				-0.1
2,735,513	-				+0.1
2,735,604	+				+1.0
2,735,745	+		PFLU_RS12325	0.23	-0.5
2,735,746	-		PFLU_RS12325	0.24	-0.8
2,735,768	+		PFLU_RS12325	0.26	+1.3
2,735,768	+		PFLU_RS12325	0.26	-0.2
2,735,769	-		PFLU_RS12325	0.26	+0.8
2,735,769	-		PFLU_RS12325	0.26	-1.2
2,735,782	+		PFLU_RS12325	0.28	-1.7
2,735,802	-		PFLU_RS12325	0.30	+0.1
2,735,802	-		PFLU_RS12325	0.30	-0.4
2,735,802	-		PFLU_RS12325	0.30	-0.6
2,735,993	+		PFLU_RS12325	0.54	-0.1
2,735,994	-		PFLU_RS12325	0.54	-0.2
2,736,175	+		PFLU_RS12325	0.77	+0.8
2,736,175	+		PFLU_RS12325	0.77	-0.2
2,736,175	+		PFLU_RS12325	0.77	+0.3
2,736,175	+		PFLU_RS12325	0.77	+0.5
2,736,175	+		PFLU_RS12325	0.77	+0.3
2,736,176	-		PFLU_RS12325	0.77	-0.4
2,736,176	-		PFLU_RS12325	0.77	-2.1
2,736,233	+		PFLU_RS12325	0.84	-0.4
2,736,233	+		PFLU_RS12325	0.84	+1.5
2,736,233	+		PFLU_RS12325	0.84	+0.0
2,736,234	-		PFLU_RS12325	0.84	+1.4
2,736,234	-		PFLU_RS12325	0.84	-3.3
2,736,245	+		PFLU_RS12325	0.85	+0.2
2,736,245	+		PFLU_RS12325	0.85	+0.4
2,736,245	+		PFLU_RS12325	0.85	+0.9
2,736,245	+		PFLU_RS12325	0.85	-0.1
2,736,245	+		PFLU_RS12325	0.85	+0.8
2,736,246	-		PFLU_RS12325	0.85	-0.4
2,736,246	-		PFLU_RS12325	0.85	+0.1
2,736,246	-		PFLU_RS12325	0.85	+1.1
2,736,246	-		PFLU_RS12325	0.85	-2.2
2,736,264	-		PFLU_RS12325	0.88	-0.7