Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16910

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
3,697,009	+				-0.2
3,697,009	+				+1.3
3,697,009	+				-0.4
3,697,009	+				+1.3
3,697,009	+				+0.2
3,697,009	+				+0.9
3,697,009	+				-0.1
3,697,015	+				-2.7
3,697,015	+				+1.4
3,697,015	+				-2.4
3,697,015	+				-1.9
3,697,015	+				-1.2
3,697,015	+				-0.6
3,697,015	+				+1.4
3,697,015	+				-0.8
3,697,015	+				-0.9
3,697,015	+				-1.7
3,697,015	+				+0.1
3,697,015	+				-2.2
3,697,015	+				-0.2
3,697,015	+				+0.8
3,697,015	+				-0.5
3,697,015	+				+2.4
3,697,015	+				+0.7
3,697,015	+				-0.2
3,697,015	+				+0.1
3,697,015	+				-0.6
3,697,015	+				-0.6
3,697,015	+				-0.7
3,697,015	+				-1.6
3,697,015	+				+2.4
3,697,015	+				-0.6
3,697,015	+				+1.0
3,697,015	+				-3.7
3,697,015	+				-0.7
3,697,015	+				-0.2
3,697,015	+				+0.6
3,697,015	+				-2.1
3,697,015	+				+0.8
3,697,015	+				-0.4
3,697,015	+				-0.3
3,697,015	+				+0.8
3,697,015	+				-1.1
3,697,015	+				-0.4
3,697,015	+				-2.8
3,697,015	+				+0.3
3,697,015	+				-1.9
3,697,015	+				+0.5
3,697,015	+				-0.5
3,697,015	+				+2.3
3,697,015	+				-1.3
3,697,015	+				+0.2
3,697,015	+				+0.2
3,697,015	+				-1.0
3,697,015	+				-0.7
3,697,015	+				+0.4
3,697,015	+				-2.2
3,697,015	+				+3.7
3,697,015	+				+0.1
3,697,015	+				+1.7
3,697,015	+				-0.4
3,697,015	+				-0.2
3,697,015	+				-0.3
3,697,015	+				-0.1
3,697,015	+				+0.6
3,697,015	+				-0.7
3,697,015	+				-0.3
3,697,015	+				-1.4
3,697,015	+				-1.1
3,697,015	+				-0.4
3,697,015	+				+0.4
3,697,015	+				+0.5
3,697,015	+				-0.4
3,697,015	+				+1.1
3,697,015	+				-0.6
3,697,015	+				+0.7
3,697,015	+				+0.3
3,697,015	+				-2.2
3,697,015	+				+0.4
3,697,015	+				-1.3
3,697,015	+				-0.3
3,697,015	+				-0.1
3,697,015	+				-0.2
3,697,015	+				+2.4
3,697,015	+				-0.4
3,697,015	+				+0.5
3,697,015	+				-1.2
3,697,015	+				-0.5
3,697,015	+				+0.3
3,697,015	+				-1.6
3,697,015	+				+1.0
3,697,015	+				+0.2
3,697,015	+				-0.2
3,697,015	+				+1.5
3,697,015	+				-0.6
3,697,015	+				-1.0
3,697,015	+				+0.2
3,697,780	+				-0.2
3,697,780	+				-0.3
3,697,780	+				+0.0
3,697,780	+				+1.1
3,697,780	+				-1.7
3,697,780	+				+0.2
3,697,780	+				+1.8
3,697,780	+				+0.3
3,697,780	+				+1.6
3,697,780	+				+0.4
3,697,780	+				+0.1
3,697,780	+				-2.3
3,697,780	+				+0.0
3,697,780	+				-2.0
3,697,780	+				-0.8
3,697,780	+				+0.4
3,697,780	+				-0.2
3,697,780	+				+1.4
3,697,780	+				-0.7
3,697,780	+				-2.0
3,697,780	+				+0.6
3,697,780	+				+0.1
3,697,780	+				-2.4
3,697,780	+				+0.5
3,697,780	+				-0.2
3,697,780	+				-0.8
3,697,780	+				+0.2
3,697,780	+				-1.1
3,697,780	+				-0.4
3,697,780	+				-0.6
3,697,780	+				+1.5
3,697,780	+				-0.4
3,697,780	+				-0.6
3,697,780	+				-0.7
3,697,780	+				-0.4
3,697,780	+				-0.1
3,697,781	-				-1.8
3,697,781	-				-0.2
3,697,781	-				-0.7
3,697,781	-				-0.6
3,697,781	-				+0.8
3,697,781	-				-2.0
3,697,781	-				+2.4
3,697,781	-				-0.2
3,697,781	-				-1.4
3,697,781	-				+0.4
3,697,781	-				-0.5
3,697,781	-				-1.0
3,697,781	-				-1.2
3,697,781	-				-0.9
3,697,781	-				-1.3
3,697,781	-				-0.7
3,697,781	-				+0.1
3,697,781	-				-2.7
3,697,781	-				+1.1
3,697,781	-				-0.6
3,697,781	-				-0.2
3,697,781	-				-2.2
3,697,898	+				+0.2
3,697,898	+				+1.4
3,697,899	-				-0.4
3,697,899	-				+0.2
3,697,899	-				-0.7
3,697,903	+				-0.1
3,697,903	+				-0.5
3,697,903	+				-0.3
3,699,273	+				+0.6
3,699,273	+				-0.2
3,699,273	+				+1.5
3,699,273	+				-1.6
3,699,273	+				-1.8
3,699,273	+				+0.1
3,699,273	+				-0.2
3,699,273	+				-0.3
3,699,273	+				+1.2
3,699,273	+				+1.0
3,699,273	+				-0.7
3,699,274	-				+0.4
3,699,499	+				+1.3
3,699,499	+				-0.6
3,699,499	+				-1.5
3,699,499	+				-1.2
3,699,499	+				-0.8
3,699,499	+				+1.4
3,699,499	+				+1.7
3,699,500	-				+0.4
3,699,500	-				-0.8
3,699,500	-				+0.7
3,699,500	-				+0.4
3,699,500	-				-0.4
3,699,521	+				-2.1
3,699,521	+				-0.5
3,699,521	+				-0.5
3,699,522	-				+0.3
3,699,522	-				-0.4
3,699,740	+		LRK54_RS16920	0.34	-0.3
3,699,740	+		LRK54_RS16920	0.34	+0.6
3,699,740	+		LRK54_RS16920	0.34	-0.7
3,699,740	+		LRK54_RS16920	0.34	-1.1
3,699,740	+		LRK54_RS16920	0.34	+0.3
3,699,740	+		LRK54_RS16920	0.34	-0.1
3,699,741	-		LRK54_RS16920	0.34	-0.7
3,699,741	-		LRK54_RS16920	0.34	+0.2
3,699,741	-		LRK54_RS16920	0.34	-0.7
3,699,741	-		LRK54_RS16920	0.34	-2.4
3,699,741	-		LRK54_RS16920	0.34	+0.1
3,699,741	-		LRK54_RS16920	0.34	+0.8
3,699,741	-		LRK54_RS16920	0.34	-0.8
3,699,741	-		LRK54_RS16920	0.34	-1.9
3,699,902	+		LRK54_RS16920	0.62	-0.4
3,699,903	-		LRK54_RS16920	0.62	-0.5
3,699,995	+		LRK54_RS16920	0.78	-0.9
3,699,995	+		LRK54_RS16920	0.78	-0.1
3,699,995	+		LRK54_RS16920	0.78	+0.0
3,699,995	+		LRK54_RS16920	0.78	-0.3
3,699,995	+		LRK54_RS16920	0.78	-1.3
3,699,995	+		LRK54_RS16920	0.78	+0.5
3,699,995	+		LRK54_RS16920	0.78	-1.6
3,699,995	+		LRK54_RS16920	0.78	-0.6
3,699,996	-		LRK54_RS16920	0.78	-1.3
3,700,029	+		LRK54_RS16920	0.84	+2.1
3,700,029	+		LRK54_RS16920	0.84	-0.8
3,700,029	+		LRK54_RS16920	0.84	+0.8
3,700,029	+		LRK54_RS16920	0.84	-1.3
3,700,029	+		LRK54_RS16920	0.84	+2.1
3,700,029	+		LRK54_RS16920	0.84	-1.5
3,700,029	+		LRK54_RS16920	0.84	-0.4
3,700,030	-		LRK54_RS16920	0.84	+1.4
3,700,030	-		LRK54_RS16920	0.84	-1.2
3,700,030	-		LRK54_RS16920	0.84	-0.4
3,700,030	-		LRK54_RS16920	0.84	-0.6
3,700,030	-		LRK54_RS16920	0.84	+1.3
3,700,030	-		LRK54_RS16920	0.84	-0.2
3,700,030	-		LRK54_RS16920	0.84	+0.6
3,700,280	-				-1.2