Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16860

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
3,688,488	+		LRK54_RS16850	0.76	-0.1
3,688,520	+		LRK54_RS16850	0.87	-0.7
3,688,520	+		LRK54_RS16850	0.87	-1.6
3,688,521	-		LRK54_RS16850	0.87	+0.3
3,688,521	-		LRK54_RS16850	0.87	-0.8
3,688,522	+		LRK54_RS16850	0.88	-0.2
3,688,523	-		LRK54_RS16850	0.88	-2.0
3,688,523	-		LRK54_RS16850	0.88	-1.4
3,688,523	-		LRK54_RS16850	0.88	-0.4
3,688,528	+				-2.0
3,688,528	+				-0.7
3,688,528	+				+0.4
3,688,528	+				-0.2
3,688,528	+				-0.7
3,688,528	+				-1.0
3,688,528	+				-0.2
3,688,528	+				+0.4
3,688,529	-				-0.9
3,688,529	-				+0.5
3,688,529	-				-0.2
3,688,529	-				+0.8
3,688,529	-				+0.2
3,688,529	-				+0.0
3,688,580	+				-2.3
3,688,580	+				-0.3
3,688,580	+				-1.2
3,688,581	-				+0.6
3,688,581	-				+0.3
3,688,611	+				-1.3
3,688,611	+				-0.3
3,688,611	+				-0.9
3,688,611	+				+1.8
3,688,612	-				+0.2
3,688,612	-				-0.7
3,688,612	-				-0.5
3,688,612	-				-0.3
3,688,636	-				-1.4
3,688,636	-				+1.8
3,688,682	+				+0.2
3,688,682	+				-0.2
3,688,682	+				+0.0
3,688,682	+				+1.0
3,688,682	+				+0.8
3,688,682	+				-0.6
3,688,682	+				+0.4
3,688,682	+				+0.7
3,688,682	+				-1.0
3,688,682	+				+0.4
3,688,682	+				-1.1
3,688,682	+				+0.7
3,688,682	+				-0.2
3,688,682	+				-1.2
3,688,682	+				-1.9
3,688,682	+				+0.2
3,688,682	+				+1.6
3,688,683	-				-1.0
3,688,683	-				+0.9
3,688,683	-				+0.2
3,688,683	-				+1.9
3,688,683	-				+0.2
3,688,699	+				-0.7
3,688,699	+				-1.8
3,688,699	+				+0.7
3,688,699	+				-0.4
3,688,699	+				-1.1
3,688,699	+				-1.0
3,688,699	+				-0.4
3,688,699	+				+0.7
3,688,699	+				-1.1
3,688,699	+				+1.2
3,688,699	+				-2.5
3,688,699	+				-0.9
3,688,699	+				+0.0
3,688,699	+				+0.0
3,688,699	+				+0.9
3,688,700	-				-0.6
3,688,700	-				+0.1
3,688,700	-				-1.3
3,688,700	-				-0.4
3,688,700	-				+0.8
3,688,700	-				+1.1
3,688,700	-				-0.2
3,688,700	-				+0.3
3,688,700	-				+0.5
3,688,700	-				-1.0
3,688,700	-				+0.2
3,688,700	-				+0.5
3,688,700	-				+0.2
3,688,700	-				-0.7
3,688,700	-				-3.1
3,688,700	-				+0.2
3,688,777	+				-1.9
3,688,777	+				-0.9
3,688,777	+				-0.8
3,688,777	+				-2.2
3,688,777	+				+0.2
3,688,777	+				+0.7
3,688,777	+				-0.3
3,688,777	+				-1.3
3,688,777	+				-0.4
3,688,777	+				-1.1
3,688,777	+				-0.6
3,688,778	-				-0.9
3,688,778	-				-0.7
3,688,778	-				-1.7
3,688,778	-				+0.6
3,688,778	-				-1.7
3,688,778	-				-0.7
3,688,807	+				+1.1
3,688,807	+				+0.4
3,688,807	+				+0.0
3,688,808	-				-0.8
3,688,808	-				-0.7
3,688,808	-				+0.4
3,688,808	-				-0.9
3,688,808	-				+0.0
3,688,808	-				-0.4
3,688,822	+				-0.7
3,688,822	+				-1.4
3,688,822	+				-2.7
3,688,823	-				+3.4
3,688,823	-				+0.8
3,688,823	-				-1.0
3,688,823	-				+0.4
3,688,823	-				-0.6
3,688,823	-				-2.7
3,688,823	-				+0.4
3,688,823	-				-3.5
3,688,866	+				-1.4
3,688,866	+				+0.8
3,688,933	+		LRK54_RS16855	0.13	-0.3
3,688,933	+		LRK54_RS16855	0.13	+0.3
3,688,934	-		LRK54_RS16855	0.13	-2.0
3,688,934	-		LRK54_RS16855	0.13	-0.2
3,688,934	-		LRK54_RS16855	0.13	-0.4
3,688,967	+		LRK54_RS16855	0.21	-0.7
3,688,967	+		LRK54_RS16855	0.21	+0.1
3,688,967	+		LRK54_RS16855	0.21	+1.3
3,688,968	-		LRK54_RS16855	0.22	+1.3
3,688,968	-		LRK54_RS16855	0.22	+0.4
3,689,010	+		LRK54_RS16855	0.32	-0.2
3,689,017	-		LRK54_RS16855	0.34	-0.6
3,689,037	-		LRK54_RS16855	0.38	-0.3
3,689,037	-		LRK54_RS16855	0.38	-1.7
3,689,089	+		LRK54_RS16855	0.51	-2.1
3,689,089	+		LRK54_RS16855	0.51	-2.7
3,689,089	+		LRK54_RS16855	0.51	+0.8
3,689,089	+		LRK54_RS16855	0.51	-0.6
3,689,089	+		LRK54_RS16855	0.51	-0.6
3,689,089	+		LRK54_RS16855	0.51	-1.6
3,689,089	+		LRK54_RS16855	0.51	-0.2
3,689,089	+		LRK54_RS16855	0.51	-0.6
3,689,089	+		LRK54_RS16855	0.51	-0.1
3,689,090	-		LRK54_RS16855	0.51	-0.7
3,689,090	-		LRK54_RS16855	0.51	+0.1
3,689,090	-		LRK54_RS16855	0.51	+0.6
3,689,090	-		LRK54_RS16855	0.51	+0.1
3,689,090	-		LRK54_RS16855	0.51	-0.4
3,689,090	-		LRK54_RS16855	0.51	+0.3
3,689,090	-		LRK54_RS16855	0.51	+0.4
3,689,090	-		LRK54_RS16855	0.51	+0.2
3,689,165	+		LRK54_RS16855	0.70	+0.3
3,689,165	+		LRK54_RS16855	0.70	-1.5
3,689,165	+		LRK54_RS16855	0.70	-0.7
3,689,165	+		LRK54_RS16855	0.70	+0.6
3,689,165	+		LRK54_RS16855	0.70	+2.1
3,689,165	+		LRK54_RS16855	0.70	-1.0
3,689,166	-		LRK54_RS16855	0.70	+0.4
3,689,166	-		LRK54_RS16855	0.70	+0.1
3,689,166	-		LRK54_RS16855	0.70	-0.1
3,689,166	-		LRK54_RS16855	0.70	-1.0
3,689,166	-		LRK54_RS16855	0.70	-0.2
3,689,166	-		LRK54_RS16855	0.70	+0.2
3,689,166	-		LRK54_RS16855	0.70	-2.1
3,689,166	-		LRK54_RS16855	0.70	-0.0
3,689,166	-		LRK54_RS16855	0.70	+1.8
3,689,166	-		LRK54_RS16855	0.70	+0.6
3,689,166	-		LRK54_RS16855	0.70	+0.7
3,689,174	+		LRK54_RS16855	0.72	-2.0
3,689,174	+		LRK54_RS16855	0.72	+0.9
3,689,174	+		LRK54_RS16855	0.72	+0.6
3,689,174	+		LRK54_RS16855	0.72	-0.2
3,689,174	+		LRK54_RS16855	0.72	-1.3
3,689,174	+		LRK54_RS16855	0.72	+0.4
3,689,174	+		LRK54_RS16855	0.72	-2.0
3,689,174	+		LRK54_RS16855	0.72	-0.5
3,689,174	+		LRK54_RS16855	0.72	+0.3
3,689,174	+		LRK54_RS16855	0.72	+0.6
3,689,174	+		LRK54_RS16855	0.72	+0.5
3,689,174	+		LRK54_RS16855	0.72	-1.3
3,689,174	+		LRK54_RS16855	0.72	+0.4
3,689,174	+		LRK54_RS16855	0.72	-0.1
3,689,175	-		LRK54_RS16855	0.72	-2.0
3,689,175	-		LRK54_RS16855	0.72	-0.1
3,689,175	-		LRK54_RS16855	0.72	-0.7
3,689,175	-		LRK54_RS16855	0.72	+0.3
3,689,175	-		LRK54_RS16855	0.72	-0.4
3,689,175	-		LRK54_RS16855	0.72	+0.4
3,689,175	-		LRK54_RS16855	0.72	-0.1
3,689,175	-		LRK54_RS16855	0.72	-1.0
3,689,175	-		LRK54_RS16855	0.72	-1.0
3,689,175	-		LRK54_RS16855	0.72	+0.2
3,689,175	-		LRK54_RS16855	0.72	+0.4
3,689,175	-		LRK54_RS16855	0.72	-0.2
3,689,175	-		LRK54_RS16855	0.72	-0.3
3,689,175	-		LRK54_RS16855	0.72	-1.3
3,689,175	-		LRK54_RS16855	0.72	-0.2
3,689,175	-		LRK54_RS16855	0.72	-0.7
3,689,175	-		LRK54_RS16855	0.72	-0.2
3,689,175	-		LRK54_RS16855	0.72	-0.4
3,689,175	-		LRK54_RS16855	0.72	-0.4
3,689,238	+		LRK54_RS16855	0.88	+2.2
3,689,238	+		LRK54_RS16855	0.88	-1.3
3,689,238	+		LRK54_RS16855	0.88	+1.0
3,689,238	+		LRK54_RS16855	0.88	-0.9
3,689,238	+		LRK54_RS16855	0.88	+0.4
3,689,238	+		LRK54_RS16855	0.88	-0.4
3,689,238	+		LRK54_RS16855	0.88	-1.6
3,689,238	+		LRK54_RS16855	0.88	-2.3
3,689,238	+		LRK54_RS16855	0.88	+0.4
3,689,238	+		LRK54_RS16855	0.88	-0.9
3,689,238	+		LRK54_RS16855	0.88	+0.8
3,689,238	+		LRK54_RS16855	0.88	+0.2
3,689,238	+		LRK54_RS16855	0.88	+0.9
3,689,238	+		LRK54_RS16855	0.88	+0.2
3,689,238	+		LRK54_RS16855	0.88	+1.1
3,689,238	+		LRK54_RS16855	0.88	-2.0
3,689,238	+		LRK54_RS16855	0.88	+0.8
3,689,238	+		LRK54_RS16855	0.88	+1.2
3,689,239	-		LRK54_RS16855	0.88	+1.6
3,689,239	-		LRK54_RS16855	0.88	+0.2
3,689,239	-		LRK54_RS16855	0.88	-1.2
3,689,239	-		LRK54_RS16855	0.88	+0.1
3,689,239	-		LRK54_RS16855	0.88	-2.0
3,689,239	-		LRK54_RS16855	0.88	-0.8
3,689,239	-		LRK54_RS16855	0.88	+0.3
3,689,239	-		LRK54_RS16855	0.88	-0.2
3,689,239	-		LRK54_RS16855	0.88	-0.3
3,689,239	-		LRK54_RS16855	0.88	-0.5
3,689,239	-		LRK54_RS16855	0.88	+0.6
3,689,239	-		LRK54_RS16855	0.88	-0.8
3,689,239	-		LRK54_RS16855	0.88	+1.4
3,689,239	-		LRK54_RS16855	0.88	+0.1
3,689,239	-		LRK54_RS16855	0.88	+0.2
3,689,239	-		LRK54_RS16855	0.88	-1.8
3,689,239	-		LRK54_RS16855	0.88	-1.3
3,689,239	-		LRK54_RS16855	0.88	-0.4
3,689,239	-		LRK54_RS16855	0.88	+1.8
3,689,239	-		LRK54_RS16855	0.88	+0.4
3,689,239	-		LRK54_RS16855	0.88	-1.7
3,689,257	+				+0.4
3,689,257	+				+0.6
3,689,258	-				+0.5
3,689,258	-				-1.9
3,689,258	-				-2.0
3,689,258	-				-1.2
3,689,258	-				+1.0
3,689,258	-				-0.7
3,689,360	+				-1.1
3,689,360	+				-0.9
3,689,360	+				+1.2
3,689,360	+				+0.9
3,689,360	+				+1.1
3,689,360	+				+0.4
3,689,360	+				+0.3
3,689,360	+				+1.4
3,689,360	+				-0.5
3,689,360	+				+0.3
3,689,360	+				+0.1
3,689,360	+				+0.6
3,689,360	+				+0.3
3,689,361	-				-1.3
3,689,361	-				-0.4
3,689,361	-				-1.1
3,689,361	-				-1.4
3,689,361	-				-0.7
3,689,361	-				+1.1
3,689,361	-				+0.2
3,689,361	-				+0.6
3,689,361	-				-0.1
3,689,361	-				+1.3
3,689,361	-				+1.0
3,689,460	+				-0.6
3,689,461	-				-0.3
3,689,461	-				-0.0
3,689,473	-				-0.7
3,689,473	-				-1.0
3,689,673	+				+0.0
3,689,673	+				-0.2
3,689,673	+				-0.2
3,689,673	+				+0.8
3,689,673	+				+0.8
3,689,673	+				+0.4
3,689,673	+				-1.2
3,689,674	-				-1.0
3,689,674	-				+0.3
3,689,674	-				-1.0
3,689,674	-				-0.3
3,689,745	+				-0.9
3,689,745	+				+0.2
3,689,745	+				-0.4
3,689,745	+				-3.1
3,689,745	+				-0.6
3,689,745	+				+0.1
3,689,745	+				-0.9
3,689,745	+				-0.2
3,689,745	+				-1.7
3,689,745	+				-1.7
3,689,745	+				-0.4
3,689,745	+				-0.6
3,689,745	+				-0.5
3,689,745	+				-0.3
3,689,745	+				-3.3
3,689,745	+				-0.4
3,689,745	+				-2.0
3,689,745	+				-1.5
3,689,745	+				+0.4
3,689,745	+				-1.7
3,689,745	+				-0.6
3,689,745	+				-0.7
3,689,745	+				-1.4
3,689,745	+				-0.3
3,689,745	+				-0.2
3,689,745	+				-2.8
3,689,745	+				-0.2
3,689,745	+				-3.0
3,689,745	+				-1.0
3,689,745	+				+0.1
3,689,745	+				-3.0
3,689,745	+				-2.3
3,689,745	+				-1.5
3,689,745	+				-2.6
3,689,745	+				-0.6
3,689,745	+				-1.5
3,689,745	+				-2.7
3,689,745	+				-0.7
3,689,746	-				-2.0
3,689,746	-				-1.2
3,689,746	-				-2.5
3,689,746	-				+0.6
3,689,746	-				-1.4
3,689,746	-				+0.2
3,689,746	-				+0.1
3,689,746	-				-2.5
3,689,746	-				-0.7
3,689,746	-				+0.2
3,689,746	-				-0.9
3,689,746	-				+0.1
3,689,746	-				-1.9
3,689,746	-				-0.6
3,689,746	-				+1.4
3,689,746	-				-3.1
3,689,746	-				+0.7
3,689,746	-				-1.8
3,689,746	-				-3.4
3,689,746	-				+0.3
3,689,746	-				-2.6
3,689,746	-				-3.0
3,689,746	-				-2.8
3,689,746	-				-2.9
3,689,746	-				+0.1
3,689,746	-				+0.8
3,689,746	-				-1.5
3,689,746	-				-1.7
3,689,748	+				+0.1
3,689,748	+				-0.6
3,689,748	+				-2.7
3,689,748	+				-2.6
3,689,748	+				-0.9
3,689,748	+				+1.4
3,689,748	+				+0.8
3,689,748	+				-0.9
3,689,748	+				+1.4
3,689,748	+				-0.6
3,689,748	+				-2.4
3,689,748	+				-0.4
3,689,748	+				-1.6
3,689,749	-				-3.4
3,689,749	-				-2.4
3,689,749	-				-3.1
3,689,749	-				+0.1
3,689,749	-				-3.6
3,689,749	-				-2.6
3,689,749	-				+1.0
3,689,749	-				-1.0
3,689,749	-				-1.9
3,689,749	-				-1.6
3,689,749	-				-1.9
3,689,915	+		LRK54_RS16865	0.33	-3.1
3,689,916	-		LRK54_RS16865	0.33	-0.5
3,689,985	+		LRK54_RS16865	0.43	-0.2
3,689,985	+		LRK54_RS16865	0.43	+0.4
3,689,985	+		LRK54_RS16865	0.43	-0.0
3,689,985	+		LRK54_RS16865	0.43	-2.2
3,689,985	+		LRK54_RS16865	0.43	+0.1
3,689,986	-		LRK54_RS16865	0.43	-0.9
3,689,986	-		LRK54_RS16865	0.43	-1.3
3,689,986	-		LRK54_RS16865	0.43	-1.4
3,689,986	-		LRK54_RS16865	0.43	-3.2
3,689,986	-		LRK54_RS16865	0.43	-0.2
3,689,986	-		LRK54_RS16865	0.43	-3.4
3,689,986	-		LRK54_RS16865	0.43	-1.3
3,690,018	+		LRK54_RS16865	0.47	+0.3
3,690,018	+		LRK54_RS16865	0.47	-0.4
3,690,018	+		LRK54_RS16865	0.47	-1.0
3,690,018	+		LRK54_RS16865	0.47	+0.4
3,690,018	+		LRK54_RS16865	0.47	+1.4
3,690,018	+		LRK54_RS16865	0.47	-0.8
3,690,018	+		LRK54_RS16865	0.47	-1.6
3,690,018	+		LRK54_RS16865	0.47	-1.9
3,690,018	+		LRK54_RS16865	0.47	-0.7
3,690,018	+		LRK54_RS16865	0.47	-0.4
3,690,018	+		LRK54_RS16865	0.47	-2.4
3,690,018	+		LRK54_RS16865	0.47	-1.1
3,690,018	+		LRK54_RS16865	0.47	-1.0
3,690,018	+		LRK54_RS16865	0.47	-0.3
3,690,019	-		LRK54_RS16865	0.48	-1.9
3,690,019	-		LRK54_RS16865	0.48	-1.5
3,690,019	-		LRK54_RS16865	0.48	-2.2
3,690,019	-		LRK54_RS16865	0.48	-0.2
3,690,019	-		LRK54_RS16865	0.48	+1.4
3,690,019	-		LRK54_RS16865	0.48	-1.6
3,690,019	-		LRK54_RS16865	0.48	-2.4
3,690,019	-		LRK54_RS16865	0.48	+0.8
3,690,019	-		LRK54_RS16865	0.48	-0.6
3,690,019	-		LRK54_RS16865	0.48	+0.4
3,690,019	-		LRK54_RS16865	0.48	-2.7
3,690,019	-		LRK54_RS16865	0.48	-2.1
3,690,067	+		LRK54_RS16865	0.54	+0.1
3,690,067	+		LRK54_RS16865	0.54	-1.8
3,690,067	+		LRK54_RS16865	0.54	-1.4
3,690,067	+		LRK54_RS16865	0.54	-1.5
3,690,067	+		LRK54_RS16865	0.54	-1.5
3,690,067	+		LRK54_RS16865	0.54	-1.4
3,690,068	-		LRK54_RS16865	0.55	-2.1
3,690,068	-		LRK54_RS16865	0.55	+0.8
3,690,068	-		LRK54_RS16865	0.55	+0.4
3,690,068	-		LRK54_RS16865	0.55	-0.4
3,690,068	-		LRK54_RS16865	0.55	-1.5
3,690,068	-		LRK54_RS16865	0.55	-1.7
3,690,068	-		LRK54_RS16865	0.55	-2.2
3,690,223	+		LRK54_RS16865	0.77	-1.2
3,690,223	+		LRK54_RS16865	0.77	-0.7
3,690,223	+		LRK54_RS16865	0.77	-0.2
3,690,223	+		LRK54_RS16865	0.77	-1.4
3,690,223	+		LRK54_RS16865	0.77	-1.3
3,690,223	+		LRK54_RS16865	0.77	+0.4
3,690,224	-		LRK54_RS16865	0.77	-0.9
3,690,224	-		LRK54_RS16865	0.77	-1.3
3,690,224	-		LRK54_RS16865	0.77	-1.4
3,690,224	-		LRK54_RS16865	0.77	-3.2
3,690,224	-		LRK54_RS16865	0.77	-0.7
3,690,224	-		LRK54_RS16865	0.77	-1.7
3,690,224	-		LRK54_RS16865	0.77	-0.2
3,690,224	-		LRK54_RS16865	0.77	-0.2