Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13935

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
3,109,044	+		LRK54_RS13930	0.27	-0.9
3,109,189	+		LRK54_RS13930	0.38	+0.2
3,109,189	+		LRK54_RS13930	0.38	-0.6
3,109,189	+		LRK54_RS13930	0.38	+1.1
3,109,189	+		LRK54_RS13930	0.38	-1.0
3,109,189	+		LRK54_RS13930	0.38	-2.2
3,109,190	-		LRK54_RS13930	0.38	-1.6
3,109,190	-		LRK54_RS13930	0.38	+1.2
3,109,190	-		LRK54_RS13930	0.38	+0.2
3,109,190	-		LRK54_RS13930	0.38	+1.4
3,109,190	-		LRK54_RS13930	0.38	-1.4
3,109,402	+		LRK54_RS13930	0.53	+2.7
3,109,402	+		LRK54_RS13930	0.53	-1.4
3,109,402	+		LRK54_RS13930	0.53	-0.9
3,109,402	+		LRK54_RS13930	0.53	-1.0
3,109,402	+		LRK54_RS13930	0.53	-0.8
3,109,402	+		LRK54_RS13930	0.53	-2.5
3,109,403	-		LRK54_RS13930	0.54	-0.2
3,109,403	-		LRK54_RS13930	0.54	+0.4
3,109,403	-		LRK54_RS13930	0.54	-1.5
3,109,403	-		LRK54_RS13930	0.54	-1.5
3,109,403	-		LRK54_RS13930	0.54	-1.1
3,109,403	-		LRK54_RS13930	0.54	-0.7
3,109,403	-		LRK54_RS13930	0.54	-1.0
3,109,403	-		LRK54_RS13930	0.54	-1.8
3,109,735	+		LRK54_RS13930	0.78	+0.1
3,109,735	+		LRK54_RS13930	0.78	+0.1
3,109,736	-		LRK54_RS13930	0.79	+0.3
3,109,736	-		LRK54_RS13930	0.79	+0.2
3,109,754	+		LRK54_RS13930	0.80	+0.1
3,109,754	+		LRK54_RS13930	0.80	-1.0
3,109,754	+		LRK54_RS13930	0.80	-0.5
3,109,754	+		LRK54_RS13930	0.80	+0.3
3,109,754	+		LRK54_RS13930	0.80	-2.1
3,109,754	+		LRK54_RS13930	0.80	+0.7
3,109,754	+		LRK54_RS13930	0.80	-1.4
3,109,754	+		LRK54_RS13930	0.80	-0.6
3,109,754	+		LRK54_RS13930	0.80	-2.5
3,109,754	+		LRK54_RS13930	0.80	+0.1
3,109,754	+		LRK54_RS13930	0.80	+0.3
3,109,754	+		LRK54_RS13930	0.80	+0.4
3,109,754	+		LRK54_RS13930	0.80	+0.1
3,109,754	+		LRK54_RS13930	0.80	-0.8
3,109,754	+		LRK54_RS13930	0.80	+0.1
3,109,754	+		LRK54_RS13930	0.80	+0.2
3,109,754	+		LRK54_RS13930	0.80	-0.2
3,109,754	+		LRK54_RS13930	0.80	-0.4
3,109,755	-		LRK54_RS13930	0.80	-1.0
3,109,755	-		LRK54_RS13930	0.80	-0.9
3,109,755	-		LRK54_RS13930	0.80	-0.1
3,109,755	-		LRK54_RS13930	0.80	+0.9
3,109,755	-		LRK54_RS13930	0.80	-1.1
3,109,755	-		LRK54_RS13930	0.80	-2.1
3,109,755	-		LRK54_RS13930	0.80	+0.3
3,109,755	-		LRK54_RS13930	0.80	+0.0
3,109,755	-		LRK54_RS13930	0.80	-2.7
3,109,755	-		LRK54_RS13930	0.80	-0.1
3,109,755	-		LRK54_RS13930	0.80	+2.2
3,109,755	-		LRK54_RS13930	0.80	-0.8
3,109,755	-		LRK54_RS13930	0.80	-0.6
3,109,755	-		LRK54_RS13930	0.80	-2.0
3,109,755	-		LRK54_RS13930	0.80	-1.5
3,109,755	-		LRK54_RS13930	0.80	+0.3
3,109,755	-		LRK54_RS13930	0.80	-0.2
3,109,755	-		LRK54_RS13930	0.80	+0.6
3,109,755	-		LRK54_RS13930	0.80	+0.6
3,110,085	+				-1.6
3,110,086	-				-0.8
3,110,485	+		LRK54_RS13935	0.39	+0.4
3,110,485	+		LRK54_RS13935	0.39	+0.7
3,110,485	+		LRK54_RS13935	0.39	-0.6
3,110,485	+		LRK54_RS13935	0.39	-1.4
3,110,485	+		LRK54_RS13935	0.39	-1.1
3,110,485	+		LRK54_RS13935	0.39	+0.3
3,110,485	+		LRK54_RS13935	0.39	+1.4
3,110,485	+		LRK54_RS13935	0.39	-0.2
3,110,485	+		LRK54_RS13935	0.39	+0.1
3,110,485	+		LRK54_RS13935	0.39	-1.5
3,110,485	+		LRK54_RS13935	0.39	+1.1
3,110,485	+		LRK54_RS13935	0.39	+0.6
3,110,485	+		LRK54_RS13935	0.39	-0.0
3,110,485	+		LRK54_RS13935	0.39	+0.2
3,110,485	+		LRK54_RS13935	0.39	+0.4
3,110,485	+		LRK54_RS13935	0.39	-0.0
3,110,485	+		LRK54_RS13935	0.39	+0.6
3,110,485	+		LRK54_RS13935	0.39	+0.5
3,110,485	+		LRK54_RS13935	0.39	+0.2
3,110,485	+		LRK54_RS13935	0.39	-0.1
3,110,485	+		LRK54_RS13935	0.39	-0.3
3,110,485	+		LRK54_RS13935	0.39	+0.1
3,110,485	+		LRK54_RS13935	0.39	+0.3
3,110,485	+		LRK54_RS13935	0.39	-0.8
3,110,485	+		LRK54_RS13935	0.39	+0.4
3,110,485	+		LRK54_RS13935	0.39	+0.2
3,110,485	+		LRK54_RS13935	0.39	+1.0
3,110,485	+		LRK54_RS13935	0.39	+0.1
3,110,486	-		LRK54_RS13935	0.39	-1.6
3,110,486	-		LRK54_RS13935	0.39	+0.8
3,110,486	-		LRK54_RS13935	0.39	+0.1
3,110,486	-		LRK54_RS13935	0.39	-1.1
3,110,486	-		LRK54_RS13935	0.39	-0.9
3,110,486	-		LRK54_RS13935	0.39	-0.2
3,110,486	-		LRK54_RS13935	0.39	+0.7
3,110,486	-		LRK54_RS13935	0.39	-1.2
3,110,486	-		LRK54_RS13935	0.39	-0.9
3,110,486	-		LRK54_RS13935	0.39	-0.1
3,110,486	-		LRK54_RS13935	0.39	-1.8
3,110,486	-		LRK54_RS13935	0.39	+1.8
3,110,486	-		LRK54_RS13935	0.39	-0.2
3,110,486	-		LRK54_RS13935	0.39	-1.2
3,110,486	-		LRK54_RS13935	0.39	+1.5
3,110,486	-		LRK54_RS13935	0.39	-0.1
3,110,486	-		LRK54_RS13935	0.39	-0.8
3,110,486	-		LRK54_RS13935	0.39	-0.5
3,110,486	-		LRK54_RS13935	0.39	-0.6
3,110,486	-		LRK54_RS13935	0.39	+0.1
3,110,486	-		LRK54_RS13935	0.39	+0.7
3,110,508	+		LRK54_RS13935	0.40	+1.5
3,110,508	+		LRK54_RS13935	0.40	-1.8
3,110,508	+		LRK54_RS13935	0.40	+0.5
3,110,508	+		LRK54_RS13935	0.40	+0.2
3,110,508	+		LRK54_RS13935	0.40	-1.1
3,110,508	+		LRK54_RS13935	0.40	-0.6
3,110,508	+		LRK54_RS13935	0.40	+1.5
3,110,508	+		LRK54_RS13935	0.40	-1.0
3,110,508	+		LRK54_RS13935	0.40	-0.9
3,110,508	+		LRK54_RS13935	0.40	-0.2
3,110,509	-		LRK54_RS13935	0.41	-0.9
3,110,509	-		LRK54_RS13935	0.41	-0.8
3,110,509	-		LRK54_RS13935	0.41	+1.9
3,110,509	-		LRK54_RS13935	0.41	-0.3
3,110,509	-		LRK54_RS13935	0.41	-1.3
3,110,509	-		LRK54_RS13935	0.41	+0.1
3,110,509	-		LRK54_RS13935	0.41	+1.6
3,110,509	-		LRK54_RS13935	0.41	+1.4
3,110,509	-		LRK54_RS13935	0.41	-0.2
3,110,509	-		LRK54_RS13935	0.41	-0.4
3,110,509	-		LRK54_RS13935	0.41	+1.1
3,110,509	-		LRK54_RS13935	0.41	-2.4
3,110,575	-		LRK54_RS13935	0.46	-2.1
3,110,613	+		LRK54_RS13935	0.49	-0.6
3,110,613	+		LRK54_RS13935	0.49	-0.9
3,110,613	+		LRK54_RS13935	0.49	-0.1
3,110,614	-		LRK54_RS13935	0.49	+0.6
3,110,614	-		LRK54_RS13935	0.49	-0.4
3,110,614	-		LRK54_RS13935	0.49	-0.2
3,110,614	-		LRK54_RS13935	0.49	+0.7
3,110,614	-		LRK54_RS13935	0.49	-0.2
3,110,694	+		LRK54_RS13935	0.56	-0.4
3,110,694	+		LRK54_RS13935	0.56	+0.4
3,110,694	+		LRK54_RS13935	0.56	-2.7
3,110,694	+		LRK54_RS13935	0.56	-0.6
3,110,694	+		LRK54_RS13935	0.56	+0.0
3,110,694	+		LRK54_RS13935	0.56	-1.4
3,110,694	+		LRK54_RS13935	0.56	+1.3
3,110,694	+		LRK54_RS13935	0.56	-1.1
3,110,694	+		LRK54_RS13935	0.56	+0.8
3,110,694	+		LRK54_RS13935	0.56	+0.6
3,110,694	+		LRK54_RS13935	0.56	-0.7
3,110,694	+		LRK54_RS13935	0.56	-0.3
3,110,694	+		LRK54_RS13935	0.56	-1.3
3,110,694	+		LRK54_RS13935	0.56	+0.1
3,110,694	+		LRK54_RS13935	0.56	+0.7
3,110,695	-		LRK54_RS13935	0.56	-0.6
3,110,695	-		LRK54_RS13935	0.56	-0.3
3,110,695	-		LRK54_RS13935	0.56	-1.7
3,110,695	-		LRK54_RS13935	0.56	+0.0
3,110,695	-		LRK54_RS13935	0.56	-0.1
3,110,695	-		LRK54_RS13935	0.56	+0.0
3,110,820	+		LRK54_RS13935	0.66	-0.1
3,110,820	+		LRK54_RS13935	0.66	+2.4
3,110,919	+		LRK54_RS13935	0.74	+0.4
3,110,919	+		LRK54_RS13935	0.74	-0.9
3,110,919	+		LRK54_RS13935	0.74	+1.0
3,110,919	+		LRK54_RS13935	0.74	-0.9
3,110,919	+		LRK54_RS13935	0.74	-0.8
3,110,919	+		LRK54_RS13935	0.74	+0.1
3,110,920	-		LRK54_RS13935	0.75	-1.1
3,110,920	-		LRK54_RS13935	0.75	-1.0
3,110,920	-		LRK54_RS13935	0.75	+0.1
3,110,920	-		LRK54_RS13935	0.75	-0.6
3,110,947	-		LRK54_RS13935	0.77	+1.2
3,111,083	+		LRK54_RS13935	0.88	+1.8
3,111,083	+		LRK54_RS13935	0.88	-1.5
3,111,083	+		LRK54_RS13935	0.88	-0.3
3,111,083	+		LRK54_RS13935	0.88	+0.2
3,111,083	+		LRK54_RS13935	0.88	+0.8
3,111,083	+		LRK54_RS13935	0.88	+1.1
3,111,083	+		LRK54_RS13935	0.88	-0.4
3,111,083	+		LRK54_RS13935	0.88	-0.9
3,111,083	+		LRK54_RS13935	0.88	+0.4
3,111,084	-		LRK54_RS13935	0.88	-0.1
3,111,084	-		LRK54_RS13935	0.88	-0.4
3,111,084	-		LRK54_RS13935	0.88	+0.6
3,111,084	-		LRK54_RS13935	0.88	+0.2
3,111,084	-		LRK54_RS13935	0.88	+1.8
3,111,084	-		LRK54_RS13935	0.88	+0.0
3,111,084	-		LRK54_RS13935	0.88	-1.8
3,111,084	-		LRK54_RS13935	0.88	+1.5
3,111,084	-		LRK54_RS13935	0.88	+0.9
3,111,084	-		LRK54_RS13935	0.88	+1.7
3,111,084	-		LRK54_RS13935	0.88	-0.8
3,111,287	+				-0.3
3,111,287	+				+0.6
3,111,287	+				-0.5
3,111,287	+				-1.9
3,111,287	+				-0.0
3,111,287	+				-0.1
3,111,287	+				-0.4
3,111,287	+				-0.3
3,111,288	-				-0.6
3,111,288	-				-1.2
3,111,288	-				-0.7
3,111,288	-				+0.2
3,111,288	-				-1.8
3,111,288	-				-2.2
3,111,288	-				+1.1
3,111,288	-				-0.4
3,111,288	-				-0.8
3,111,288	-				+1.2
3,111,288	-				-0.0
3,111,382	+		LRK54_RS13940	0.20	+0.5
3,111,382	+		LRK54_RS13940	0.20	-0.5
3,111,383	-		LRK54_RS13940	0.20	-0.3
3,111,383	-		LRK54_RS13940	0.20	-0.6
3,111,383	-		LRK54_RS13940	0.20	-1.3
3,111,383	-		LRK54_RS13940	0.20	-1.0
3,111,395	-		LRK54_RS13940	0.22	-0.2
3,111,454	+		LRK54_RS13940	0.30	-2.8
3,111,454	+		LRK54_RS13940	0.30	+0.5
3,111,454	+		LRK54_RS13940	0.30	-1.5
3,111,454	+		LRK54_RS13940	0.30	-0.8
3,111,454	+		LRK54_RS13940	0.30	-2.4
3,111,454	+		LRK54_RS13940	0.30	-1.4
3,111,454	+		LRK54_RS13940	0.30	-0.2
3,111,454	+		LRK54_RS13940	0.30	-1.6
3,111,454	+		LRK54_RS13940	0.30	-1.7
3,111,455	-		LRK54_RS13940	0.30	-0.2
3,111,455	-		LRK54_RS13940	0.30	-0.1
3,111,455	-		LRK54_RS13940	0.30	-0.6
3,111,455	-		LRK54_RS13940	0.30	-0.0
3,111,455	-		LRK54_RS13940	0.30	+0.0
3,111,455	-		LRK54_RS13940	0.30	-0.4
3,111,455	-		LRK54_RS13940	0.30	-1.1
3,111,455	-		LRK54_RS13940	0.30	-2.0
3,111,455	-		LRK54_RS13940	0.30	-0.5
3,111,455	-		LRK54_RS13940	0.30	-0.6
3,111,455	-		LRK54_RS13940	0.30	-2.1
3,111,455	-		LRK54_RS13940	0.30	+0.5
3,111,455	-		LRK54_RS13940	0.30	-2.6
3,111,794	-		LRK54_RS13940	0.78	-0.3
3,111,794	-		LRK54_RS13940	0.78	+1.0
3,111,794	-		LRK54_RS13940	0.78	-0.9
3,112,015	-				+0.3