Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12165

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
2,705,284	+		LRK54_RS12150	0.82	-0.9
2,705,392	+		LRK54_RS12150	0.89	-0.7
2,705,392	+		LRK54_RS12150	0.89	+0.3
2,705,392	+		LRK54_RS12150	0.89	-1.0
2,705,392	+		LRK54_RS12150	0.89	+0.4
2,705,392	+		LRK54_RS12150	0.89	+0.9
2,705,393	-		LRK54_RS12150	0.89	-0.1
2,705,393	-		LRK54_RS12150	0.89	-0.8
2,705,393	-		LRK54_RS12150	0.89	-0.5
2,705,554	+				+1.2
2,705,554	+				+0.3
2,705,554	+				-0.4
2,705,554	+				-1.6
2,705,554	+				+0.4
2,705,554	+				+1.1
2,705,554	+				-2.1
2,705,554	+				+0.1
2,705,554	+				+0.9
2,705,554	+				+1.2
2,705,554	+				+0.6
2,705,554	+				+0.2
2,705,555	-				-0.4
2,705,555	-				+0.4
2,705,555	-				+0.4
2,705,555	-				+0.3
2,705,555	-				+0.2
2,705,555	-				+0.0
2,705,555	-				-0.0
2,705,555	-				-1.9
2,705,555	-				+0.1
2,705,555	-				-0.5
2,705,623	+		LRK54_RS12155	0.11	-0.0
2,705,623	+		LRK54_RS12155	0.11	+0.3
2,705,623	+		LRK54_RS12155	0.11	-0.3
2,705,623	+		LRK54_RS12155	0.11	+0.7
2,705,624	-		LRK54_RS12155	0.12	-0.1
2,705,636	-		LRK54_RS12155	0.14	+0.2
2,705,636	-		LRK54_RS12155	0.14	-0.1
2,705,821	+		LRK54_RS12155	0.55	-0.3
2,705,821	+		LRK54_RS12155	0.55	-1.9
2,705,821	+		LRK54_RS12155	0.55	+0.2
2,705,821	+		LRK54_RS12155	0.55	-0.5
2,705,821	+		LRK54_RS12155	0.55	+0.5
2,705,822	-		LRK54_RS12155	0.55	-0.1
2,705,822	-		LRK54_RS12155	0.55	+1.0
2,705,822	-		LRK54_RS12155	0.55	-0.9
2,705,822	-		LRK54_RS12155	0.55	-0.7
2,705,822	-		LRK54_RS12155	0.55	+1.2
2,705,822	-		LRK54_RS12155	0.55	+0.5
2,705,878	+		LRK54_RS12155	0.68	-0.6
2,705,878	+		LRK54_RS12155	0.68	+0.5
2,705,878	+		LRK54_RS12155	0.68	-0.6
2,705,878	+		LRK54_RS12155	0.68	-0.8
2,705,878	+		LRK54_RS12155	0.68	+1.0
2,705,878	+		LRK54_RS12155	0.68	-0.1
2,705,878	+		LRK54_RS12155	0.68	+0.6
2,705,878	+		LRK54_RS12155	0.68	-0.2
2,705,878	+		LRK54_RS12155	0.68	-1.4
2,705,878	+		LRK54_RS12155	0.68	+0.1
2,705,878	+		LRK54_RS12155	0.68	+0.3
2,705,878	+		LRK54_RS12155	0.68	-0.7
2,705,878	+		LRK54_RS12155	0.68	-1.7
2,705,878	+		LRK54_RS12155	0.68	+0.5
2,705,878	+		LRK54_RS12155	0.68	-0.4
2,705,878	+		LRK54_RS12155	0.68	+0.9
2,705,878	+		LRK54_RS12155	0.68	-2.1
2,705,879	-		LRK54_RS12155	0.68	-0.4
2,705,879	-		LRK54_RS12155	0.68	+0.0
2,705,879	-		LRK54_RS12155	0.68	-1.1
2,705,879	-		LRK54_RS12155	0.68	+2.2
2,705,879	-		LRK54_RS12155	0.68	+1.9
2,705,879	-		LRK54_RS12155	0.68	+1.1
2,705,879	-		LRK54_RS12155	0.68	-0.6
2,705,879	-		LRK54_RS12155	0.68	+0.2
2,705,879	-		LRK54_RS12155	0.68	-0.9
2,705,879	-		LRK54_RS12155	0.68	-0.4
2,705,879	-		LRK54_RS12155	0.68	-1.0
2,705,879	-		LRK54_RS12155	0.68	-0.0
2,705,879	-		LRK54_RS12155	0.68	-0.5
2,705,879	-		LRK54_RS12155	0.68	-0.8
2,705,879	-		LRK54_RS12155	0.68	+0.0
2,705,879	-		LRK54_RS12155	0.68	+0.2
2,705,879	-		LRK54_RS12155	0.68	-0.0
2,706,213	+				-0.1
2,706,213	+				+0.6
2,706,213	+				+0.9
2,706,214	-				-0.0
2,706,214	-				+1.4
2,706,246	+				-0.1
2,706,246	+				+0.2
2,706,246	+				+1.0
2,706,247	-				-0.8
2,706,247	-				-1.5
2,706,247	-				+1.8
2,706,247	-				-0.4
2,706,247	-				-0.3
2,706,247	-				-1.1
2,706,354	-				+0.8
2,706,354	-				+0.6
2,706,592	+		LRK54_RS12165	0.26	+1.0
2,706,593	+		LRK54_RS12165	0.26	+0.9
2,706,593	+		LRK54_RS12165	0.26	+0.7
2,706,593	+		LRK54_RS12165	0.26	+1.0
2,706,593	+		LRK54_RS12165	0.26	+0.3
2,706,593	+		LRK54_RS12165	0.26	+0.5
2,706,593	+		LRK54_RS12165	0.26	+1.4
2,706,593	+		LRK54_RS12165	0.26	+1.1
2,706,593	+		LRK54_RS12165	0.26	+1.0
2,706,594	-		LRK54_RS12165	0.26	+0.7
2,706,594	-		LRK54_RS12165	0.26	+2.3
2,706,594	-		LRK54_RS12165	0.26	+0.3
2,706,594	-		LRK54_RS12165	0.26	+0.8
2,706,594	-		LRK54_RS12165	0.26	+0.5
2,706,594	-		LRK54_RS12165	0.26	+0.2
2,706,594	-		LRK54_RS12165	0.26	-0.1
2,706,594	-		LRK54_RS12165	0.26	-2.1
2,706,788	+		LRK54_RS12165	0.41	+1.0
2,706,788	+		LRK54_RS12165	0.41	+1.0
2,706,788	+		LRK54_RS12165	0.41	+0.2
2,706,788	+		LRK54_RS12165	0.41	+0.6
2,706,788	+		LRK54_RS12165	0.41	+1.1
2,706,788	+		LRK54_RS12165	0.41	+0.5
2,706,788	+		LRK54_RS12165	0.41	+0.4
2,706,788	+		LRK54_RS12165	0.41	+1.3
2,706,789	-		LRK54_RS12165	0.41	+1.9
2,706,789	-		LRK54_RS12165	0.41	+0.6
2,706,789	-		LRK54_RS12165	0.41	-0.2
2,706,789	-		LRK54_RS12165	0.41	-0.1
2,706,789	-		LRK54_RS12165	0.41	-0.5
2,706,789	-		LRK54_RS12165	0.41	+0.4
2,706,812	+		LRK54_RS12165	0.43	+0.9
2,706,813	-		LRK54_RS12165	0.43	+0.3
2,706,854	+		LRK54_RS12165	0.46	+1.2
2,707,022	+		LRK54_RS12165	0.59	+0.9
2,707,022	+		LRK54_RS12165	0.59	+0.7
2,707,022	+		LRK54_RS12165	0.59	+0.4
2,707,022	+		LRK54_RS12165	0.59	+0.9
2,707,022	+		LRK54_RS12165	0.59	+0.8
2,707,022	+		LRK54_RS12165	0.59	+1.6
2,707,022	+		LRK54_RS12165	0.59	+1.1
2,707,022	+		LRK54_RS12165	0.59	+0.7
2,707,022	+		LRK54_RS12165	0.59	+0.5
2,707,022	+		LRK54_RS12165	0.59	+0.2
2,707,022	+		LRK54_RS12165	0.59	+0.9
2,707,022	+		LRK54_RS12165	0.59	+0.3
2,707,022	+		LRK54_RS12165	0.59	+1.5
2,707,022	+		LRK54_RS12165	0.59	+0.7
2,707,022	+		LRK54_RS12165	0.59	+1.7
2,707,022	+		LRK54_RS12165	0.59	+1.1
2,707,023	-		LRK54_RS12165	0.59	+0.6
2,707,023	-		LRK54_RS12165	0.59	+0.6
2,707,023	-		LRK54_RS12165	0.59	+1.3
2,707,023	-		LRK54_RS12165	0.59	-0.2
2,707,023	-		LRK54_RS12165	0.59	-0.3
2,707,023	-		LRK54_RS12165	0.59	-0.1
2,707,023	-		LRK54_RS12165	0.59	+0.9
2,707,023	-		LRK54_RS12165	0.59	+1.1
2,707,151	+		LRK54_RS12165	0.69	+1.2
2,707,151	+		LRK54_RS12165	0.69	+0.8
2,707,151	+		LRK54_RS12165	0.69	+0.7
2,707,151	+		LRK54_RS12165	0.69	+0.4
2,707,151	+		LRK54_RS12165	0.69	+0.8
2,707,152	-		LRK54_RS12165	0.69	+1.0
2,707,152	-		LRK54_RS12165	0.69	+0.6
2,707,152	-		LRK54_RS12165	0.69	+0.7
2,707,152	-		LRK54_RS12165	0.69	+0.4
2,707,152	-		LRK54_RS12165	0.69	+0.7
2,707,152	-		LRK54_RS12165	0.69	+0.7
2,707,193	+		LRK54_RS12165	0.72	+1.0
2,707,193	+		LRK54_RS12165	0.72	+0.7
2,707,193	+		LRK54_RS12165	0.72	+3.1
2,707,193	+		LRK54_RS12165	0.72	+1.6
2,707,193	+		LRK54_RS12165	0.72	+0.9
2,707,193	+		LRK54_RS12165	0.72	-0.6
2,707,193	+		LRK54_RS12165	0.72	+1.6
2,707,193	+		LRK54_RS12165	0.72	+1.4
2,707,193	+		LRK54_RS12165	0.72	+1.1
2,707,194	-		LRK54_RS12165	0.73	+1.4
2,707,194	-		LRK54_RS12165	0.73	+0.5
2,707,194	-		LRK54_RS12165	0.73	+1.2
2,707,194	-		LRK54_RS12165	0.73	+0.9
2,707,194	-		LRK54_RS12165	0.73	+1.2
2,707,194	-		LRK54_RS12165	0.73	+0.6
2,707,228	+		LRK54_RS12165	0.75	-0.4
2,707,229	+		LRK54_RS12165	0.75	+0.7
2,707,229	+		LRK54_RS12165	0.75	+0.7
2,707,229	+		LRK54_RS12165	0.75	+0.9
2,707,229	+		LRK54_RS12165	0.75	+0.8
2,707,229	+		LRK54_RS12165	0.75	+1.1
2,707,229	+		LRK54_RS12165	0.75	+0.6
2,707,229	+		LRK54_RS12165	0.75	-0.1
2,707,229	+		LRK54_RS12165	0.75	+1.7
2,707,229	+		LRK54_RS12165	0.75	+0.4
2,707,229	+		LRK54_RS12165	0.75	+1.0
2,707,229	+		LRK54_RS12165	0.75	+0.8
2,707,229	+		LRK54_RS12165	0.75	+0.6
2,707,229	+		LRK54_RS12165	0.75	+0.7
2,707,229	+		LRK54_RS12165	0.75	+0.3
2,707,229	+		LRK54_RS12165	0.75	+1.1
2,707,229	+		LRK54_RS12165	0.75	+1.6
2,707,229	+		LRK54_RS12165	0.75	+0.7
2,707,229	+		LRK54_RS12165	0.75	+0.6
2,707,229	+		LRK54_RS12165	0.75	+1.2
2,707,229	+		LRK54_RS12165	0.75	-0.6
2,707,229	+		LRK54_RS12165	0.75	+0.1
2,707,229	+		LRK54_RS12165	0.75	+0.6
2,707,230	-		LRK54_RS12165	0.75	+1.4
2,707,230	-		LRK54_RS12165	0.75	+1.4
2,707,230	-		LRK54_RS12165	0.75	+0.8
2,707,230	-		LRK54_RS12165	0.75	+0.6
2,707,230	-		LRK54_RS12165	0.75	+0.6
2,707,230	-		LRK54_RS12165	0.75	+0.8
2,707,230	-		LRK54_RS12165	0.75	+1.5
2,707,230	-		LRK54_RS12165	0.75	+0.8
2,707,230	-		LRK54_RS12165	0.75	+1.6
2,707,230	-		LRK54_RS12165	0.75	+0.3
2,707,230	-		LRK54_RS12165	0.75	+0.4
2,707,230	-		LRK54_RS12165	0.75	+0.9
2,707,230	-		LRK54_RS12165	0.75	+0.3
2,707,230	-		LRK54_RS12165	0.75	+1.3
2,707,230	-		LRK54_RS12165	0.75	+0.9
2,707,230	-		LRK54_RS12165	0.75	+0.6
2,707,230	-		LRK54_RS12165	0.75	+1.9
2,707,230	-		LRK54_RS12165	0.75	+0.8
2,707,230	-		LRK54_RS12165	0.75	+1.2
2,707,230	-		LRK54_RS12165	0.75	+0.3
2,707,230	-		LRK54_RS12165	0.75	+0.8
2,707,230	-		LRK54_RS12165	0.75	+0.3
2,707,331	+		LRK54_RS12165	0.83	+0.5
2,707,331	+		LRK54_RS12165	0.83	+1.0
2,707,331	+		LRK54_RS12165	0.83	+1.7
2,707,331	+		LRK54_RS12165	0.83	+0.1
2,707,332	-		LRK54_RS12165	0.83	+0.2
2,707,332	-		LRK54_RS12165	0.83	+2.2
2,707,332	-		LRK54_RS12165	0.83	+1.4
2,707,332	-		LRK54_RS12165	0.83	+0.6
2,707,499	+				+1.2
2,707,499	+				+2.2
2,707,499	+				+2.4
2,707,499	+				+1.5
2,707,499	+				+0.2
2,707,499	+				+0.9
2,707,499	+				+0.3
2,707,499	+				+1.4
2,707,499	+				+0.5
2,707,499	+				+0.8
2,707,499	+				+0.8
2,707,499	+				+0.4
2,707,499	+				-0.1
2,707,499	+				-0.4
2,707,499	+				+0.5
2,707,499	+				+0.3
2,707,499	+				+0.8
2,707,499	+				+1.2
2,707,499	+				+1.8
2,707,499	+				+0.4
2,707,499	+				+0.8
2,707,499	+				+0.3
2,707,499	+				+1.1
2,707,499	+				+1.7
2,707,499	+				+0.6
2,707,499	+				+0.9
2,707,499	+				+0.4
2,707,499	+				+1.5
2,707,499	+				+0.1
2,707,499	+				+0.5
2,707,499	+				+1.3
2,707,499	+				+0.4
2,707,500	-				+0.8
2,707,500	-				+0.4
2,707,500	-				+2.4
2,707,500	-				+1.6
2,707,500	-				+2.0
2,707,500	-				+0.5
2,707,500	-				+1.1
2,707,500	-				+2.0
2,707,500	-				+0.2
2,707,500	-				+0.9
2,707,500	-				+0.7
2,707,500	-				+0.3
2,707,500	-				+0.7
2,707,500	-				+0.4
2,707,500	-				+0.4
2,707,500	-				+1.5
2,707,500	-				-0.2
2,707,500	-				+0.6
2,707,500	-				+1.2
2,707,500	-				+0.3
2,707,500	-				+1.3
2,707,500	-				-1.6
2,707,500	-				+0.4
2,707,500	-				+0.6
2,707,500	-				+0.8
2,707,500	-				+0.9
2,707,500	-				+0.8
2,707,500	-				+2.6
2,707,500	-				+2.4
2,707,500	-				+0.3
2,707,500	-				+0.9
2,707,500	-				+0.4
2,707,500	-				+0.7
2,707,500	-				+0.3
2,707,500	-				+0.5
2,707,500	-				-0.2
2,707,502	+				+1.1
2,707,502	+				+0.6
2,707,502	+				+2.2
2,707,502	+				+0.9
2,707,502	+				+1.2
2,707,502	+				+0.7
2,707,502	+				+1.4
2,707,502	+				+0.9
2,707,502	+				+0.0
2,707,502	+				+1.0
2,707,502	+				+0.9
2,707,502	+				+0.6
2,707,502	+				+0.8
2,707,502	+				+1.1
2,707,502	+				+0.3
2,707,502	+				+0.7
2,707,502	+				+0.4
2,707,502	+				+0.5
2,707,502	+				+1.0
2,707,503	-				+1.1
2,707,503	-				+0.6
2,707,503	-				+0.9
2,707,503	-				+0.4
2,707,503	-				+1.4
2,707,503	-				+1.9
2,707,503	-				-0.4
2,707,503	-				+0.9
2,707,503	-				+0.9
2,707,503	-				-0.1
2,707,503	-				+2.4
2,707,519	+				+0.9
2,707,519	+				+0.9
2,707,519	+				+0.6
2,707,520	-				+1.1
2,707,520	-				+2.6
2,707,520	-				+0.6
2,707,520	-				+0.9
2,707,524	+				+1.0
2,707,524	+				+0.6
2,707,524	+				+0.6
2,707,524	+				-0.1
2,707,525	-				+1.6
2,707,525	-				+0.5
2,707,610	+				+0.1
2,707,610	+				+0.3
2,707,610	+				-0.1
2,707,610	+				-0.1
2,707,611	-				+0.1
2,707,864	+		LRK54_RS12170	0.36	+0.2
2,707,864	+		LRK54_RS12170	0.36	+0.3
2,707,864	+		LRK54_RS12170	0.36	-1.0
2,707,864	+		LRK54_RS12170	0.36	+1.7
2,707,864	+		LRK54_RS12170	0.36	+0.6
2,707,865	-		LRK54_RS12170	0.36	+0.0
2,707,865	-		LRK54_RS12170	0.36	+1.9
2,707,865	-		LRK54_RS12170	0.36	-1.7
2,707,865	-		LRK54_RS12170	0.36	+0.1
2,707,865	-		LRK54_RS12170	0.36	+2.8
2,707,865	-		LRK54_RS12170	0.36	-0.0
2,707,865	-		LRK54_RS12170	0.36	-0.1
2,707,865	-		LRK54_RS12170	0.36	-0.5
2,708,023	+		LRK54_RS12170	0.63	-0.2
2,708,023	+		LRK54_RS12170	0.63	-0.6
2,708,023	+		LRK54_RS12170	0.63	+0.5
2,708,023	+		LRK54_RS12170	0.63	-1.9
2,708,023	+		LRK54_RS12170	0.63	-0.6
2,708,024	-		LRK54_RS12170	0.63	+1.0
2,708,024	-		LRK54_RS12170	0.63	-0.9
2,708,024	-		LRK54_RS12170	0.63	+1.2
2,708,024	-		LRK54_RS12170	0.63	+0.1
2,708,024	-		LRK54_RS12170	0.63	+0.2
2,708,493	+		LRK54_RS12175	0.14	-0.7
2,708,493	+		LRK54_RS12175	0.14	-1.9
2,708,493	+		LRK54_RS12175	0.14	+0.9
2,708,493	+		LRK54_RS12175	0.14	+1.4
2,708,493	+		LRK54_RS12175	0.14	-1.2
2,708,493	+		LRK54_RS12175	0.14	-0.5
2,708,494	-		LRK54_RS12175	0.14	-0.2