Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11060

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
2,450,409	-				-1.0
2,450,409	-				-1.2
2,450,409	-				-1.9
2,450,409	-				-0.1
2,450,409	-				-0.7
2,450,409	-				-1.2
2,450,409	-				+0.1
2,450,409	-				+0.6
2,450,496	+				+1.4
2,450,497	-				-1.6
2,450,497	-				+0.4
2,450,497	-				+0.7
2,450,497	-				-2.3
2,450,650	+		LRK54_RS11055	0.18	+0.4
2,450,650	+		LRK54_RS11055	0.18	-2.3
2,450,650	+		LRK54_RS11055	0.18	-2.4
2,450,650	+		LRK54_RS11055	0.18	-0.2
2,450,650	+		LRK54_RS11055	0.18	-2.3
2,450,650	+		LRK54_RS11055	0.18	-0.9
2,450,650	+		LRK54_RS11055	0.18	-1.9
2,450,650	+		LRK54_RS11055	0.18	-2.2
2,450,651	-		LRK54_RS11055	0.18	+1.1
2,450,651	-		LRK54_RS11055	0.18	-1.0
2,450,651	-		LRK54_RS11055	0.18	-0.8
2,450,651	-		LRK54_RS11055	0.18	-0.5
2,450,651	-		LRK54_RS11055	0.18	-0.8
2,450,651	-		LRK54_RS11055	0.18	-0.2
2,451,017	+		LRK54_RS11055	0.71	-1.5
2,451,017	+		LRK54_RS11055	0.71	-2.8
2,451,017	+		LRK54_RS11055	0.71	-1.9
2,451,017	+		LRK54_RS11055	0.71	-1.0
2,451,017	+		LRK54_RS11055	0.71	-1.1
2,451,017	+		LRK54_RS11055	0.71	-1.5
2,451,017	+		LRK54_RS11055	0.71	+0.4
2,451,017	+		LRK54_RS11055	0.71	-1.2
2,451,017	+		LRK54_RS11055	0.71	+0.4
2,451,017	+		LRK54_RS11055	0.71	-1.0
2,451,017	+		LRK54_RS11055	0.71	-1.0
2,451,017	+		LRK54_RS11055	0.71	-2.7
2,451,017	+		LRK54_RS11055	0.71	-0.8
2,451,017	+		LRK54_RS11055	0.71	-1.8
2,451,017	+		LRK54_RS11055	0.71	-0.3
2,451,017	+		LRK54_RS11055	0.71	+0.7
2,451,017	+		LRK54_RS11055	0.71	-0.4
2,451,017	+		LRK54_RS11055	0.71	-0.8
2,451,017	+		LRK54_RS11055	0.71	-2.4
2,451,017	+		LRK54_RS11055	0.71	-0.6
2,451,017	+		LRK54_RS11055	0.71	-1.0
2,451,017	+		LRK54_RS11055	0.71	-4.0
2,451,017	+		LRK54_RS11055	0.71	+0.8
2,451,017	+		LRK54_RS11055	0.71	-1.2
2,451,017	+		LRK54_RS11055	0.71	-0.8
2,451,017	+		LRK54_RS11055	0.71	-1.0
2,451,017	+		LRK54_RS11055	0.71	-2.5
2,451,017	+		LRK54_RS11055	0.71	-1.0
2,451,017	+		LRK54_RS11055	0.71	-3.1
2,451,017	+		LRK54_RS11055	0.71	-2.1
2,451,017	+		LRK54_RS11055	0.71	-0.1
2,451,017	+		LRK54_RS11055	0.71	-2.0
2,451,017	+		LRK54_RS11055	0.71	-0.7
2,451,017	+		LRK54_RS11055	0.71	-0.1
2,451,017	+		LRK54_RS11055	0.71	-2.5
2,451,018	-		LRK54_RS11055	0.71	-2.0
2,451,018	-		LRK54_RS11055	0.71	+0.8
2,451,018	-		LRK54_RS11055	0.71	-0.8
2,451,018	-		LRK54_RS11055	0.71	-2.0
2,451,018	-		LRK54_RS11055	0.71	-4.2
2,451,018	-		LRK54_RS11055	0.71	-0.4
2,451,018	-		LRK54_RS11055	0.71	-0.0
2,451,018	-		LRK54_RS11055	0.71	-3.8
2,451,018	-		LRK54_RS11055	0.71	+0.4
2,451,018	-		LRK54_RS11055	0.71	-1.8
2,451,018	-		LRK54_RS11055	0.71	-2.2
2,451,018	-		LRK54_RS11055	0.71	-2.1
2,451,018	-		LRK54_RS11055	0.71	-0.8
2,451,018	-		LRK54_RS11055	0.71	-0.0
2,451,018	-		LRK54_RS11055	0.71	-0.8
2,451,018	-		LRK54_RS11055	0.71	-1.0
2,451,018	-		LRK54_RS11055	0.71	-1.4
2,451,018	-		LRK54_RS11055	0.71	+0.1
2,451,018	-		LRK54_RS11055	0.71	-1.2
2,451,018	-		LRK54_RS11055	0.71	-1.7
2,451,018	-		LRK54_RS11055	0.71	-0.2
2,451,018	-		LRK54_RS11055	0.71	-0.2
2,451,018	-		LRK54_RS11055	0.71	-0.1
2,451,018	-		LRK54_RS11055	0.71	-0.4
2,451,018	-		LRK54_RS11055	0.71	-1.4
2,451,018	-		LRK54_RS11055	0.71	-3.2
2,451,018	-		LRK54_RS11055	0.71	-0.9
2,451,018	-		LRK54_RS11055	0.71	-0.6
2,451,018	-		LRK54_RS11055	0.71	-3.9
2,451,018	-		LRK54_RS11055	0.71	-1.8
2,451,018	-		LRK54_RS11055	0.71	-2.9
2,451,018	-		LRK54_RS11055	0.71	+0.2
2,451,018	-		LRK54_RS11055	0.71	-1.8
2,451,018	-		LRK54_RS11055	0.71	-2.4
2,451,018	-		LRK54_RS11055	0.71	-2.3
2,451,018	-		LRK54_RS11055	0.71	-2.3
2,451,018	-		LRK54_RS11055	0.71	-3.5
2,451,018	-		LRK54_RS11055	0.71	-2.8
2,451,018	-		LRK54_RS11055	0.71	-1.7
2,451,018	-		LRK54_RS11055	0.71	-1.0
2,451,018	-		LRK54_RS11055	0.71	-1.7
2,451,023	+		LRK54_RS11055	0.72	-3.4
2,451,023	+		LRK54_RS11055	0.72	-2.2
2,451,023	+		LRK54_RS11055	0.72	-1.3
2,451,023	+		LRK54_RS11055	0.72	+0.3
2,451,023	+		LRK54_RS11055	0.72	-0.2
2,451,024	-		LRK54_RS11055	0.72	-0.6
2,451,024	-		LRK54_RS11055	0.72	-2.6
2,451,024	-		LRK54_RS11055	0.72	-0.4
2,451,024	-		LRK54_RS11055	0.72	-1.0
2,451,024	-		LRK54_RS11055	0.72	-1.2
2,451,024	-		LRK54_RS11055	0.72	-2.0
2,451,024	-		LRK54_RS11055	0.72	+0.1
2,451,024	-		LRK54_RS11055	0.72	-1.6
2,451,024	-		LRK54_RS11055	0.72	-1.4
2,451,024	-		LRK54_RS11055	0.72	-0.9
2,451,086	+		LRK54_RS11055	0.81	+0.1
2,451,086	+		LRK54_RS11055	0.81	-1.0
2,451,086	+		LRK54_RS11055	0.81	+1.1
2,451,086	+		LRK54_RS11055	0.81	-1.4
2,451,086	+		LRK54_RS11055	0.81	-0.3
2,451,086	+		LRK54_RS11055	0.81	-2.0
2,451,086	+		LRK54_RS11055	0.81	-1.8
2,451,086	+		LRK54_RS11055	0.81	-1.5
2,451,086	+		LRK54_RS11055	0.81	+0.5
2,451,086	+		LRK54_RS11055	0.81	-0.4
2,451,086	+		LRK54_RS11055	0.81	-1.8
2,451,086	+		LRK54_RS11055	0.81	-0.5
2,451,086	+		LRK54_RS11055	0.81	+0.4
2,451,086	+		LRK54_RS11055	0.81	-0.6
2,451,086	+		LRK54_RS11055	0.81	+0.3
2,451,087	-		LRK54_RS11055	0.81	-1.3
2,451,087	-		LRK54_RS11055	0.81	-0.9
2,451,087	-		LRK54_RS11055	0.81	-1.8
2,451,087	-		LRK54_RS11055	0.81	-0.9
2,451,087	-		LRK54_RS11055	0.81	-0.9
2,451,087	-		LRK54_RS11055	0.81	-1.4
2,451,087	-		LRK54_RS11055	0.81	-1.2
2,451,087	-		LRK54_RS11055	0.81	+0.1
2,451,087	-		LRK54_RS11055	0.81	-1.0
2,451,087	-		LRK54_RS11055	0.81	-3.0
2,451,087	-		LRK54_RS11055	0.81	-1.8
2,451,087	-		LRK54_RS11055	0.81	+0.5
2,451,087	-		LRK54_RS11055	0.81	+2.4
2,451,087	-		LRK54_RS11055	0.81	-2.5
2,451,087	-		LRK54_RS11055	0.81	-0.5
2,451,107	+		LRK54_RS11055	0.84	-2.0
2,451,107	+		LRK54_RS11055	0.84	-1.6
2,451,107	+		LRK54_RS11055	0.84	-1.0
2,451,107	+		LRK54_RS11055	0.84	-2.6
2,451,108	-		LRK54_RS11055	0.84	-2.3
2,451,108	-		LRK54_RS11055	0.84	+0.8
2,451,108	-		LRK54_RS11055	0.84	-1.4
2,451,108	-		LRK54_RS11055	0.84	-2.6
2,451,200	+				-0.9
2,451,200	+				+1.4
2,451,200	+				-2.3
2,451,200	+				-0.4
2,451,200	+				-0.5
2,451,200	+				+0.5
2,451,200	+				+0.5
2,451,200	+				-1.0
2,451,200	+				-2.7
2,451,200	+				+0.4
2,451,200	+				+0.4
2,451,200	+				-1.1
2,451,200	+				-0.9
2,451,200	+				-2.1
2,451,200	+				-1.2
2,451,200	+				-1.4
2,451,200	+				+1.0
2,451,200	+				-1.9
2,451,200	+				+1.7
2,451,200	+				-0.6
2,451,200	+				+0.6
2,451,200	+				+1.5
2,451,200	+				+0.3
2,451,201	-				-1.5
2,451,201	-				+0.1
2,451,201	-				-1.2
2,451,201	-				+0.2
2,451,201	-				-0.2
2,451,201	-				+1.3
2,451,201	-				-1.0
2,451,201	-				-1.7
2,451,201	-				-0.7
2,451,201	-				-1.7
2,451,201	-				-1.8
2,451,201	-				-0.2
2,451,201	-				+1.3
2,451,201	-				-0.2
2,451,201	-				+0.7
2,451,215	+				-0.8
2,451,215	+				-0.9
2,451,272	+				+0.8
2,451,512	+				+0.2
2,451,512	+				-1.0
2,451,512	+				-2.0
2,452,215	+		LRK54_RS11070	0.32	+1.8
2,452,342	-		LRK54_RS11070	0.49	-0.2