Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09805

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
2,138,553	-				+0.9
2,138,588	+				+0.4
2,138,588	+				+0.5
2,138,588	+				-0.7
2,138,588	+				+0.7
2,138,588	+				+1.3
2,138,589	-				+0.4
2,138,589	-				-0.6
2,138,589	-				-0.3
2,138,589	-				+1.1
2,138,589	-				+0.3
2,138,589	-				-0.7
2,138,589	-				+0.9
2,138,589	-				-0.6
2,138,589	-				-0.4
2,138,589	-				-0.1
2,138,589	-				-1.2
2,138,589	-				+1.4
2,138,589	-				+0.1
2,138,589	-				-0.3
2,138,589	-				+1.0
2,138,589	-				+0.9
2,138,668	+				+0.6
2,138,668	+				-0.2
2,138,668	+				+0.2
2,138,668	+				+0.2
2,138,668	+				-0.9
2,138,668	+				-1.1
2,138,668	+				-0.4
2,138,668	+				-0.8
2,138,668	+				+0.2
2,138,668	+				+0.4
2,138,668	+				+0.8
2,138,668	+				-1.7
2,138,668	+				-0.8
2,138,668	+				+0.9
2,138,668	+				-0.1
2,138,668	+				-0.1
2,138,668	+				-0.3
2,138,668	+				-1.1
2,138,668	+				-0.5
2,138,668	+				+0.5
2,138,668	+				-2.0
2,138,668	+				-0.6
2,138,668	+				+0.2
2,138,668	+				-1.0
2,138,668	+				+0.7
2,138,668	+				+0.9
2,138,668	+				-0.2
2,138,668	+				-0.3
2,138,669	-				-0.1
2,138,672	+				+1.2
2,138,672	+				-1.5
2,138,672	+				-0.7
2,138,672	+				+0.9
2,138,672	+				-1.1
2,138,672	+				-0.9
2,138,672	+				-1.7
2,138,672	+				-0.1
2,138,672	+				+0.2
2,138,672	+				+0.2
2,138,672	+				+1.0
2,138,672	+				+0.0
2,138,672	+				+0.3
2,138,672	+				-0.3
2,138,672	+				+0.6
2,138,672	+				-1.9
2,138,672	+				-0.6
2,138,672	+				-2.2
2,138,672	+				-1.2
2,138,672	+				+0.1
2,138,672	+				+0.9
2,138,672	+				+1.2
2,138,672	+				-0.9
2,138,672	+				-0.3
2,138,672	+				-0.5
2,138,672	+				-1.0
2,138,672	+				+1.2
2,138,672	+				-0.6
2,138,672	+				+0.1
2,138,672	+				+0.1
2,138,672	+				-0.2
2,138,672	+				+0.3
2,138,672	+				-0.1
2,138,672	+				-1.7
2,138,672	+				-0.2
2,138,672	+				-0.1
2,138,672	+				-1.0
2,138,672	+				-0.5
2,138,672	+				-1.1
2,138,672	+				+0.5
2,138,672	+				-0.3
2,138,672	+				-0.5
2,138,672	+				+0.4
2,138,672	+				+0.9
2,138,672	+				+1.3
2,138,672	+				-0.2
2,138,672	+				+0.1
2,138,672	+				-2.3
2,138,672	+				+0.1
2,138,672	+				-0.6
2,138,672	+				+1.2
2,138,672	+				+0.2
2,138,672	+				+0.0
2,138,673	-				-1.1
2,138,680	+				+0.1
2,139,381	+				-0.7
2,139,381	+				-0.3
2,139,381	+				-0.1
2,139,381	+				+2.2
2,139,381	+				-1.1
2,139,382	-				-0.4
2,139,382	-				+0.3
2,139,382	-				-0.5
2,139,382	-				-1.2
2,139,382	-				-0.9
2,139,382	-				+1.5
2,139,382	-				-0.1
2,139,382	-				+0.8
2,139,382	-				+0.2
2,139,383	+				-0.4
2,139,383	+				+0.5
2,139,383	+				-0.9
2,139,383	+				-0.5
2,139,383	+				-0.3
2,139,383	+				+0.8
2,139,383	+				+0.5
2,139,383	+				+0.2
2,139,383	+				-1.4
2,139,383	+				+1.0
2,139,383	+				-1.2
2,139,383	+				-0.2
2,139,383	+				-0.7
2,139,383	+				+0.7
2,139,383	+				+1.5
2,139,383	+				+1.9
2,139,383	+				-0.6
2,139,383	+				-0.4
2,139,383	+				+0.3
2,139,383	+				+1.5
2,139,383	+				-1.8
2,139,383	+				-0.7
2,139,383	+				-0.5
2,139,383	+				+0.5
2,139,383	+				-2.1
2,139,383	+				-1.0
2,139,383	+				-0.8
2,139,383	+				-0.5
2,139,383	+				-1.8
2,139,383	+				+0.0
2,139,383	+				+1.1
2,139,383	+				-0.1
2,139,383	+				-1.0
2,139,383	+				-1.4
2,139,383	+				-1.0
2,139,383	+				-0.7
2,139,383	+				-0.3
2,139,383	+				-0.6
2,139,383	+				-0.3
2,139,383	+				-0.7
2,139,383	+				+0.7
2,139,383	+				+0.7
2,139,384	-				+0.8
2,139,384	-				-1.3
2,139,384	-				-1.3
2,139,384	-				-1.6
2,139,384	-				-0.5
2,139,384	-				+2.5
2,139,384	-				-1.6
2,139,384	-				+0.6
2,139,384	-				-0.1
2,139,384	-				-1.0
2,139,384	-				+0.0
2,139,384	-				-0.1
2,139,384	-				-0.2
2,139,384	-				+1.3
2,139,384	-				+0.6
2,139,384	-				+0.2
2,139,384	-				-1.2
2,139,384	-				-0.3
2,139,384	-				-0.6
2,139,384	-				+1.0
2,139,384	-				+0.2
2,139,384	-				-1.5
2,139,384	-				+0.5
2,139,384	-				+0.1
2,139,384	-				-1.4
2,139,384	-				-1.3
2,139,384	-				-0.1
2,139,384	-				+0.0
2,139,384	-				+0.2
2,139,384	-				+1.4
2,139,384	-				-1.0
2,139,384	-				-0.3
2,139,384	-				-2.3
2,139,384	-				-0.5
2,139,384	-				+0.1
2,139,384	-				-3.4
2,139,384	-				-0.4
2,139,384	-				+0.8
2,139,384	-				+0.2
2,139,384	-				+1.9
2,139,384	-				+0.0
2,139,384	-				-0.1
2,139,384	-				+0.2
2,139,384	-				+0.7
2,139,384	-				-1.1
2,139,384	-				-0.6
2,139,384	-				+0.8
2,139,384	-				+1.3
2,139,384	-				-0.4
2,139,384	-				+1.8
2,139,384	-				-1.5
2,139,384	-				-0.4
2,139,384	-				-0.6
2,139,390	+				+0.4
2,139,390	+				-0.6
2,139,390	+				-0.9
2,139,390	+				-0.5
2,139,390	+				-1.1
2,139,390	+				+0.8
2,139,390	+				-0.6
2,139,390	+				+0.2
2,139,390	+				+1.1
2,139,390	+				-0.3
2,139,390	+				-0.4
2,139,391	-				+0.5
2,139,391	-				-1.0
2,139,391	-				+0.4
2,139,391	-				+2.1
2,139,391	-				-0.5
2,139,391	-				-1.2
2,139,391	-				+0.2
2,139,391	-				+0.6
2,139,391	-				+1.8
2,139,391	-				+0.4
2,139,391	-				-0.8
2,139,391	-				-1.4
2,139,391	-				-0.9
2,139,391	-				+1.3
2,139,391	-				-1.2
2,139,391	-				-0.0
2,139,481	+				+1.0
2,139,481	+				-0.1
2,139,481	+				+0.5
2,139,481	+				+0.6
2,139,481	+				-0.4
2,139,481	+				-0.8
2,139,481	+				-0.5
2,139,481	+				-2.5
2,139,481	+				+1.0
2,139,481	+				-0.1
2,139,481	+				-0.9
2,139,481	+				-0.3
2,139,481	+				-0.7
2,139,481	+				+1.2
2,139,481	+				+0.9
2,139,481	+				-3.0
2,139,481	+				+0.6
2,139,481	+				-1.0
2,139,481	+				-0.2
2,139,481	+				-0.1
2,139,481	+				+0.1
2,139,481	+				+0.4
2,139,481	+				-1.2
2,139,481	+				+0.2
2,139,481	+				-0.4
2,139,481	+				+0.8
2,139,481	+				-0.3
2,139,481	+				-1.1
2,139,482	-				-0.9
2,139,482	-				+0.4
2,139,482	-				+1.5
2,139,482	-				-0.7
2,139,482	-				-0.6
2,139,482	-				-0.3
2,139,482	-				+0.7
2,139,482	-				-1.4
2,139,482	-				-0.8
2,139,482	-				-2.2
2,139,482	-				-1.5
2,139,482	-				+0.9
2,139,482	-				+1.5
2,139,482	-				+0.4
2,139,482	-				-0.7
2,139,482	-				+1.5
2,139,482	-				+0.2
2,139,482	-				-0.7
2,139,482	-				-0.4
2,139,482	-				+1.5
2,139,482	-				-0.2
2,139,482	-				+0.9
2,139,482	-				-0.1
2,139,482	-				+0.0
2,139,482	-				-1.1
2,139,482	-				-0.8
2,139,482	-				+0.2
2,139,482	-				+0.2
2,139,482	-				-0.7
2,139,646	-		LRK54_RS09805	0.19	-0.3
2,139,646	-		LRK54_RS09805	0.19	+1.5
2,139,771	+		LRK54_RS09805	0.36	+0.8
2,139,771	+		LRK54_RS09805	0.36	-0.5
2,139,771	+		LRK54_RS09805	0.36	-1.2
2,139,816	+		LRK54_RS09805	0.42	-0.7
2,139,816	+		LRK54_RS09805	0.42	+0.2
2,139,816	+		LRK54_RS09805	0.42	+0.4
2,139,816	+		LRK54_RS09805	0.42	-1.1
2,139,817	-		LRK54_RS09805	0.42	-0.7
2,139,817	-		LRK54_RS09805	0.42	-0.3
2,139,852	+		LRK54_RS09805	0.47	-0.3
2,139,852	+		LRK54_RS09805	0.47	+0.2
2,139,852	+		LRK54_RS09805	0.47	+2.5
2,139,852	+		LRK54_RS09805	0.47	-0.1
2,139,852	+		LRK54_RS09805	0.47	-0.7
2,139,852	+		LRK54_RS09805	0.47	+0.5
2,139,852	+		LRK54_RS09805	0.47	+0.5
2,139,852	+		LRK54_RS09805	0.47	-1.2
2,139,852	+		LRK54_RS09805	0.47	-0.8
2,139,852	+		LRK54_RS09805	0.47	-1.2
2,139,852	+		LRK54_RS09805	0.47	+0.9
2,139,852	+		LRK54_RS09805	0.47	-0.3
2,139,853	-		LRK54_RS09805	0.47	-0.6
2,139,853	-		LRK54_RS09805	0.47	+1.5
2,139,853	-		LRK54_RS09805	0.47	-2.2
2,139,853	-		LRK54_RS09805	0.47	-0.3
2,139,853	-		LRK54_RS09805	0.47	-0.2
2,139,853	-		LRK54_RS09805	0.47	-2.2
2,139,853	-		LRK54_RS09805	0.47	-1.1
2,139,853	-		LRK54_RS09805	0.47	+1.5
2,139,853	-		LRK54_RS09805	0.47	+0.9
2,139,853	-		LRK54_RS09805	0.47	-2.1
2,139,984	+		LRK54_RS09805	0.65	-0.5
2,139,985	-		LRK54_RS09805	0.65	-0.3
2,140,074	+		LRK54_RS09805	0.77	-2.6
2,140,074	+		LRK54_RS09805	0.77	-1.5
2,140,074	+		LRK54_RS09805	0.77	+2.5
2,140,074	+		LRK54_RS09805	0.77	-1.1
2,140,074	+		LRK54_RS09805	0.77	+0.7
2,140,074	+		LRK54_RS09805	0.77	-0.7
2,140,075	-		LRK54_RS09805	0.77	+1.5
2,140,075	-		LRK54_RS09805	0.77	-0.3
2,140,075	-		LRK54_RS09805	0.77	+0.9
2,140,075	-		LRK54_RS09805	0.77	-0.1
2,140,075	-		LRK54_RS09805	0.77	-0.1
2,140,075	-		LRK54_RS09805	0.77	+1.5
2,140,075	-		LRK54_RS09805	0.77	+1.5
2,140,075	-		LRK54_RS09805	0.77	-0.5
2,140,140	+		LRK54_RS09805	0.85	+0.5
2,140,140	+		LRK54_RS09805	0.85	-0.8
2,140,140	+		LRK54_RS09805	0.85	-0.7
2,140,140	+		LRK54_RS09805	0.85	-0.7
2,140,140	+		LRK54_RS09805	0.85	-0.1
2,140,141	-		LRK54_RS09805	0.86	-0.6
2,140,176	+				-1.4
2,140,176	+				+0.5
2,140,176	+				-0.3
2,140,176	+				-1.5
2,140,176	+				-2.7
2,140,176	+				-1.0
2,140,176	+				-1.0
2,140,176	+				-0.7
2,140,176	+				-0.7
2,140,176	+				-1.3
2,140,176	+				+1.5
2,140,176	+				-0.1
2,140,177	-				-0.5
2,140,177	-				+0.2
2,140,177	-				-1.8
2,140,177	-				+0.2
2,140,177	-				+0.7
2,140,177	-				-0.1
2,140,177	-				-0.5
2,140,177	-				-2.0
2,140,177	-				-0.3
2,140,177	-				+3.2
2,140,177	-				+2.5
2,140,177	-				-0.1
2,140,177	-				-1.2
2,140,179	+				+0.7
2,140,179	+				-1.9
2,140,179	+				-0.8
2,140,179	+				-1.3
2,140,179	+				-2.7
2,140,179	+				+0.0
2,140,179	+				-0.6
2,140,179	+				-1.3
2,140,179	+				-2.0
2,140,179	+				+0.2
2,140,179	+				+0.9
2,140,179	+				-0.5
2,140,179	+				-0.9
2,140,179	+				+1.5
2,140,179	+				-1.9
2,140,179	+				+0.3
2,140,179	+				-0.6
2,140,179	+				-0.8
2,140,179	+				-1.6
2,140,179	+				-0.5
2,140,179	+				-0.1
2,140,179	+				+0.5
2,140,180	-				+0.2
2,140,180	-				-1.6
2,140,180	-				-1.5
2,140,180	-				-1.0
2,140,180	-				-1.5
2,140,180	-				-1.1
2,140,180	-				-3.3
2,140,180	-				-0.2
2,140,180	-				-0.6
2,140,180	-				+0.7
2,140,180	-				-2.1
2,140,180	-				-0.5
2,140,180	-				-1.8
2,140,180	-				+0.9
2,140,180	-				-0.4
2,140,180	-				-0.1
2,140,180	-				-1.8
2,140,180	-				-1.5
2,140,245	+				+1.1
2,140,245	+				-1.2
2,140,245	+				-1.8
2,140,245	+				+0.3
2,140,245	+				+2.1
2,140,245	+				+1.1
2,140,245	+				+1.2
2,140,245	+				-0.1
2,140,245	+				+1.4
2,140,245	+				-0.7
2,140,245	+				-0.0
2,140,245	+				+0.8
2,140,245	+				-1.1
2,140,245	+				-0.6
2,140,245	+				-0.8
2,140,245	+				-1.8
2,140,245	+				-0.5
2,140,245	+				+1.2
2,140,245	+				+0.5
2,140,246	-				+0.1
2,140,246	-				-1.7
2,140,246	-				+1.0
2,140,246	-				-1.6
2,140,246	-				-0.7
2,140,246	-				-2.1
2,140,246	-				-0.8
2,140,246	-				-0.7
2,140,246	-				-0.7
2,140,271	+				-0.4
2,140,271	+				-0.4
2,140,271	+				-0.5
2,140,271	+				+0.4
2,140,271	+				-0.5
2,140,271	+				+1.8
2,140,272	-				-0.4
2,140,272	-				-0.3
2,140,272	-				-0.6
2,140,360	+				-0.1
2,140,415	+				-0.0
2,140,415	+				-1.3
2,140,415	+				-0.1
2,140,415	+				+0.4
2,140,415	+				+1.8
2,140,415	+				+1.5
2,140,415	+				-0.3
2,140,415	+				-0.1
2,140,415	+				-0.7
2,140,415	+				+0.4
2,140,415	+				+0.1
2,140,415	+				+0.9
2,140,416	-				+0.0
2,140,416	-				+0.7
2,140,416	-				-1.1
2,140,416	-				+0.7
2,140,416	-				-1.9
2,140,416	-				-0.5
2,140,416	-				+2.7
2,140,416	-				-1.2
2,140,416	-				-1.5
2,140,416	-				-0.4
2,140,416	-				+2.0
2,140,416	-				-2.6
2,140,416	-				-0.3
2,140,416	-				-0.9
2,140,470	+				-0.9
2,140,470	+				-0.6
2,140,470	+				+0.3
2,140,470	+				+0.9
2,140,470	+				-1.0
2,140,470	+				-1.7
2,140,470	+				-0.5
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