Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08030

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
1,758,017	+				+0.6
1,758,018	-				+1.5
1,758,018	-				+0.8
1,758,026	+				-0.6
1,758,027	-				-0.4
1,758,027	-				-0.5
1,758,027	-				-0.6
1,758,133	+				+0.9
1,758,133	+				+0.2
1,758,133	+				-2.3
1,758,133	+				-2.5
1,758,134	-				-0.3
1,758,134	-				+0.9
1,758,223	+				+0.9
1,758,223	+				-2.1
1,758,223	+				+1.6
1,758,223	+				+0.6
1,758,223	+				-1.1
1,758,223	+				+0.3
1,758,223	+				-0.3
1,758,223	+				+0.3
1,758,223	+				+0.8
1,758,223	+				+1.3
1,758,223	+				+1.0
1,758,223	+				+0.6
1,758,223	+				+0.3
1,758,223	+				+0.2
1,758,223	+				-1.1
1,758,223	+				-0.6
1,758,223	+				+0.1
1,758,224	-				+0.0
1,758,224	-				-1.5
1,758,224	-				-0.3
1,758,224	-				+0.2
1,758,224	-				-0.9
1,758,224	-				+0.2
1,758,224	-				+0.9
1,758,224	-				-0.8
1,758,224	-				+1.0
1,758,224	-				+0.2
1,758,608	+		LRK54_RS08025	0.58	+0.2
1,758,608	+		LRK54_RS08025	0.58	+1.4
1,758,608	+		LRK54_RS08025	0.58	-1.4
1,758,609	-		LRK54_RS08025	0.58	+1.5
1,758,609	-		LRK54_RS08025	0.58	+0.2
1,758,861	-				-1.3
1,759,063	+		LRK54_RS08030	0.26	-2.3
1,759,063	+		LRK54_RS08030	0.26	+0.5
1,759,063	+		LRK54_RS08030	0.26	-0.3
1,759,063	+		LRK54_RS08030	0.26	+1.3
1,759,063	+		LRK54_RS08030	0.26	-1.7
1,759,063	+		LRK54_RS08030	0.26	-0.3
1,759,063	+		LRK54_RS08030	0.26	+0.3
1,759,064	-		LRK54_RS08030	0.26	-0.1
1,759,064	-		LRK54_RS08030	0.26	+1.2
1,759,064	-		LRK54_RS08030	0.26	-0.8
1,759,064	-		LRK54_RS08030	0.26	+0.7
1,759,064	-		LRK54_RS08030	0.26	+0.2
1,759,117	+		LRK54_RS08030	0.36	-2.6
1,759,117	+		LRK54_RS08030	0.36	+1.0
1,759,117	+		LRK54_RS08030	0.36	+1.3
1,759,118	-		LRK54_RS08030	0.36	+2.3
1,759,118	-		LRK54_RS08030	0.36	+0.6
1,759,118	-		LRK54_RS08030	0.36	+1.4
1,759,118	-		LRK54_RS08030	0.36	-0.5
1,759,118	-		LRK54_RS08030	0.36	+0.9
1,759,118	-		LRK54_RS08030	0.36	-0.2
1,759,118	-		LRK54_RS08030	0.36	-0.0
1,759,264	+		LRK54_RS08030	0.63	-2.6
1,759,264	+		LRK54_RS08030	0.63	+0.1
1,759,265	-		LRK54_RS08030	0.63	-0.9
1,759,265	-		LRK54_RS08030	0.63	-0.6
1,759,265	-		LRK54_RS08030	0.63	-1.5
1,759,265	-		LRK54_RS08030	0.63	+0.5
1,759,265	-		LRK54_RS08030	0.63	+2.7
1,759,528	+				-0.6
1,759,528	+				+2.2
1,759,528	+				+0.4
1,759,528	+				-0.7
1,759,528	+				-1.7
1,759,528	+				+0.0
1,759,528	+				+0.4
1,759,528	+				+2.9
1,759,528	+				+0.4
1,759,528	+				-1.0
1,759,528	+				-1.5
1,759,528	+				-2.8
1,759,528	+				+1.2
1,759,528	+				+1.5
1,759,528	+				-1.2
1,759,528	+				-0.1
1,759,528	+				+0.0
1,759,529	-				-0.7
1,759,529	-				-0.9
1,759,529	-				-0.8
1,759,529	-				+0.2
1,759,529	-				+0.5
1,759,529	-				+0.2
1,759,529	-				-0.8
1,759,529	-				-0.5
1,759,529	-				+0.2
1,759,529	-				-0.6
1,759,540	+				+0.4
1,759,541	-				-1.0
1,759,541	-				-0.7
1,759,657	+		LRK54_RS08035	0.24	+1.1
1,759,657	+		LRK54_RS08035	0.24	-0.6
1,759,657	+		LRK54_RS08035	0.24	-0.5
1,759,657	+		LRK54_RS08035	0.24	+2.1
1,759,657	+		LRK54_RS08035	0.24	-2.1
1,759,657	+		LRK54_RS08035	0.24	-0.4
1,759,657	+		LRK54_RS08035	0.24	-0.6
1,759,658	-		LRK54_RS08035	0.24	-0.8
1,759,658	-		LRK54_RS08035	0.24	+0.7
1,759,658	-		LRK54_RS08035	0.24	+1.2
1,759,658	-		LRK54_RS08035	0.24	-2.3
1,759,658	-		LRK54_RS08035	0.24	-0.1
1,759,658	-		LRK54_RS08035	0.24	-0.2
1,759,658	-		LRK54_RS08035	0.24	+0.6
1,759,658	-		LRK54_RS08035	0.24	-0.1
1,759,663	+		LRK54_RS08035	0.25	-1.9
1,759,663	+		LRK54_RS08035	0.25	-1.1
1,759,663	+		LRK54_RS08035	0.25	-0.5
1,759,663	+		LRK54_RS08035	0.25	+0.8
1,759,663	+		LRK54_RS08035	0.25	-0.1
1,759,664	-		LRK54_RS08035	0.25	+0.1
1,759,664	-		LRK54_RS08035	0.25	+0.3
1,759,664	-		LRK54_RS08035	0.25	+1.5
1,759,664	-		LRK54_RS08035	0.25	+0.0
1,759,664	-		LRK54_RS08035	0.25	-0.1
1,759,664	-		LRK54_RS08035	0.25	+1.5
1,759,664	-		LRK54_RS08035	0.25	-0.1
1,759,669	+		LRK54_RS08035	0.26	-0.5
1,759,669	+		LRK54_RS08035	0.26	-2.4
1,759,669	+		LRK54_RS08035	0.26	-1.4
1,759,670	-		LRK54_RS08035	0.26	+0.6
1,759,670	-		LRK54_RS08035	0.26	+1.8
1,759,670	-		LRK54_RS08035	0.26	-0.1
1,759,670	-		LRK54_RS08035	0.26	+0.5
1,759,682	-		LRK54_RS08035	0.28	-0.2
1,759,753	+		LRK54_RS08035	0.41	+0.5
1,759,753	+		LRK54_RS08035	0.41	+0.1
1,759,753	+		LRK54_RS08035	0.41	+0.6
1,759,754	-		LRK54_RS08035	0.41	-0.3
1,759,754	-		LRK54_RS08035	0.41	+2.1
1,759,754	-		LRK54_RS08035	0.41	-0.3
1,759,754	-		LRK54_RS08035	0.41	+0.5
1,759,754	-		LRK54_RS08035	0.41	-0.1
1,759,951	+		LRK54_RS08035	0.75	-0.2
1,759,951	+		LRK54_RS08035	0.75	-0.6
1,759,951	+		LRK54_RS08035	0.75	+0.2
1,759,951	+		LRK54_RS08035	0.75	-0.3
1,759,951	+		LRK54_RS08035	0.75	+0.1
1,759,951	+		LRK54_RS08035	0.75	-0.0
1,759,951	+		LRK54_RS08035	0.75	-1.3
1,759,951	+		LRK54_RS08035	0.75	-0.1
1,759,951	+		LRK54_RS08035	0.75	+1.3
1,759,951	+		LRK54_RS08035	0.75	-1.0
1,759,951	+		LRK54_RS08035	0.75	-0.1
1,759,951	+		LRK54_RS08035	0.75	+0.3
1,759,951	+		LRK54_RS08035	0.75	-0.9
1,759,951	+		LRK54_RS08035	0.75	+0.5
1,759,951	+		LRK54_RS08035	0.75	+1.1
1,759,951	+		LRK54_RS08035	0.75	-1.0
1,759,951	+		LRK54_RS08035	0.75	-2.4
1,759,951	+		LRK54_RS08035	0.75	+0.9
1,759,951	+		LRK54_RS08035	0.75	-1.6
1,759,951	+		LRK54_RS08035	0.75	+0.5
1,759,951	+		LRK54_RS08035	0.75	-0.3
1,759,951	+		LRK54_RS08035	0.75	+1.1
1,759,951	+		LRK54_RS08035	0.75	-0.5
1,759,951	+		LRK54_RS08035	0.75	+0.8
1,759,951	+		LRK54_RS08035	0.75	-0.5
1,759,951	+		LRK54_RS08035	0.75	+0.0
1,759,951	+		LRK54_RS08035	0.75	-0.2
1,759,951	+		LRK54_RS08035	0.75	-0.9
1,759,951	+		LRK54_RS08035	0.75	-0.4
1,759,951	+		LRK54_RS08035	0.75	-0.3
1,759,951	+		LRK54_RS08035	0.75	+0.6
1,759,951	+		LRK54_RS08035	0.75	-0.9
1,759,952	-		LRK54_RS08035	0.76	+0.4
1,759,952	-		LRK54_RS08035	0.76	-0.2
1,759,952	-		LRK54_RS08035	0.76	-1.2
1,759,952	-		LRK54_RS08035	0.76	-0.5
1,759,952	-		LRK54_RS08035	0.76	-0.2
1,759,952	-		LRK54_RS08035	0.76	-2.2
1,759,952	-		LRK54_RS08035	0.76	-1.8
1,759,952	-		LRK54_RS08035	0.76	-0.6
1,759,952	-		LRK54_RS08035	0.76	+0.1
1,759,952	-		LRK54_RS08035	0.76	+0.4
1,759,952	-		LRK54_RS08035	0.76	+0.2
1,759,952	-		LRK54_RS08035	0.76	-0.3
1,759,952	-		LRK54_RS08035	0.76	+0.9
1,759,952	-		LRK54_RS08035	0.76	+0.3
1,759,952	-		LRK54_RS08035	0.76	-0.3
1,759,952	-		LRK54_RS08035	0.76	-0.6
1,759,952	-		LRK54_RS08035	0.76	-0.1
1,759,952	-		LRK54_RS08035	0.76	+0.9
1,759,952	-		LRK54_RS08035	0.76	-0.1
1,759,952	-		LRK54_RS08035	0.76	-0.6
1,759,952	-		LRK54_RS08035	0.76	+0.9
1,759,952	-		LRK54_RS08035	0.76	-0.3
1,759,952	-		LRK54_RS08035	0.76	-1.8
1,759,952	-		LRK54_RS08035	0.76	+0.1
1,759,952	-		LRK54_RS08035	0.76	-0.8
1,759,952	-		LRK54_RS08035	0.76	-1.2
1,759,952	-		LRK54_RS08035	0.76	-2.2
1,760,029	+		LRK54_RS08035	0.89	+0.4
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	-0.7
1,760,029	+		LRK54_RS08035	0.89	-0.6
1,760,029	+		LRK54_RS08035	0.89	+0.2
1,760,029	+		LRK54_RS08035	0.89	-0.4
1,760,029	+		LRK54_RS08035	0.89	-1.4
1,760,029	+		LRK54_RS08035	0.89	-1.1
1,760,029	+		LRK54_RS08035	0.89	+0.9
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	+0.2
1,760,029	+		LRK54_RS08035	0.89	-0.9
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	+0.2
1,760,029	+		LRK54_RS08035	0.89	+0.8
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	-1.0
1,760,029	+		LRK54_RS08035	0.89	-0.1
1,760,029	+		LRK54_RS08035	0.89	-1.3
1,760,030	-		LRK54_RS08035	0.89	+0.1
1,760,030	-		LRK54_RS08035	0.89	+0.2
1,760,030	-		LRK54_RS08035	0.89	+0.5
1,760,030	-		LRK54_RS08035	0.89	+0.2
1,760,030	-		LRK54_RS08035	0.89	+1.7
1,760,030	-		LRK54_RS08035	0.89	-0.3
1,760,030	-		LRK54_RS08035	0.89	-0.2
1,760,030	-		LRK54_RS08035	0.89	+0.1
1,760,030	-		LRK54_RS08035	0.89	+0.5
1,760,030	-		LRK54_RS08035	0.89	-0.7
1,760,030	-		LRK54_RS08035	0.89	+0.2
1,760,030	-		LRK54_RS08035	0.89	-1.1
1,760,291	+		LRK54_RS08040	0.52	-0.7
1,760,291	+		LRK54_RS08040	0.52	-1.5
1,760,291	+		LRK54_RS08040	0.52	+0.4
1,760,291	+		LRK54_RS08040	0.52	+1.7
1,760,292	-		LRK54_RS08040	0.53	-0.2
1,760,292	-		LRK54_RS08040	0.53	-1.4
1,760,292	-		LRK54_RS08040	0.53	-1.1
1,760,292	-		LRK54_RS08040	0.53	+0.3
1,760,292	-		LRK54_RS08040	0.53	+1.1
1,760,344	+		LRK54_RS08040	0.68	+0.8
1,760,345	-		LRK54_RS08040	0.68	+1.2
1,760,359	+		LRK54_RS08040	0.72	-2.0
1,760,359	+		LRK54_RS08040	0.72	-0.8
1,760,359	+		LRK54_RS08040	0.72	+0.3
1,760,360	-		LRK54_RS08040	0.72	+1.5
1,760,360	-		LRK54_RS08040	0.72	+1.1
1,760,360	-		LRK54_RS08040	0.72	+0.5
1,760,360	-		LRK54_RS08040	0.72	-2.4
1,760,360	-		LRK54_RS08040	0.72	+0.2
1,760,360	-		LRK54_RS08040	0.72	-0.5
1,760,360	-		LRK54_RS08040	0.72	-1.0
1,760,360	-		LRK54_RS08040	0.72	+0.0