Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07465

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
1,607,679	+		LRK54_RS07455	0.61	+0.3
1,607,680	-		LRK54_RS07455	0.61	+0.5
1,607,804	+		LRK54_RS07455	0.76	+0.3
1,607,805	-		LRK54_RS07455	0.77	-0.4
1,607,805	-		LRK54_RS07455	0.77	-0.3
1,607,805	-		LRK54_RS07455	0.77	-1.0
1,607,886	+		LRK54_RS07455	0.87	+0.6
1,607,886	+		LRK54_RS07455	0.87	+0.3
1,607,886	+		LRK54_RS07455	0.87	-0.8
1,607,947	+				-2.1
1,607,948	-				+1.4
1,607,948	-				+0.5
1,607,948	-				-2.0
1,607,983	+				+0.5
1,607,983	+				+0.0
1,607,983	+				+0.4
1,608,160	-		LRK54_RS07460	0.54	-0.9
1,608,160	-		LRK54_RS07460	0.54	-0.1
1,608,238	+		LRK54_RS07460	0.77	+0.5
1,608,347	-				-0.1
1,608,347	-				+0.3
1,608,347	-				+0.5
1,608,347	-				-0.5
1,608,353	+				-0.2
1,608,353	+				+0.1
1,608,353	+				+0.3
1,608,353	+				-0.6
1,608,353	+				-1.0
1,608,353	+				-0.8
1,608,353	+				-1.4
1,608,353	+				+0.3
1,608,354	-				-0.0
1,608,354	-				-0.9
1,608,354	-				-0.3
1,608,354	-				-0.7
1,608,354	-				-0.7
1,608,354	-				+0.2
1,608,354	-				+0.2
1,608,354	-				+0.3
1,608,354	-				+0.4
1,608,413	+				-0.5
1,608,414	-				-0.2
1,608,474	+				-2.0
1,608,474	+				-1.1
1,608,474	+				-1.2
1,608,475	-				+0.4
1,608,475	-				-1.9
1,608,475	-				-1.1
1,608,475	-				-1.0
1,608,475	-				-0.8
1,608,475	-				+1.5
1,608,475	-				-2.2
1,608,624	+		LRK54_RS07465	0.13	-0.5
1,608,624	+		LRK54_RS07465	0.13	-1.6
1,608,625	-		LRK54_RS07465	0.13	-1.3
1,608,625	-		LRK54_RS07465	0.13	-0.5
1,608,625	-		LRK54_RS07465	0.13	-1.1
1,608,625	-		LRK54_RS07465	0.13	-0.4
1,608,625	-		LRK54_RS07465	0.13	+1.4
1,608,625	-		LRK54_RS07465	0.13	+2.5
1,608,625	-		LRK54_RS07465	0.13	+0.4
1,608,703	+		LRK54_RS07465	0.28	-0.2
1,608,703	+		LRK54_RS07465	0.28	-0.2
1,608,703	+		LRK54_RS07465	0.28	-0.8
1,608,703	+		LRK54_RS07465	0.28	-2.4
1,608,704	-		LRK54_RS07465	0.28	+0.1
1,608,704	-		LRK54_RS07465	0.28	-1.3
1,608,704	-		LRK54_RS07465	0.28	-0.7
1,608,704	-		LRK54_RS07465	0.28	-0.3
1,608,704	-		LRK54_RS07465	0.28	-0.7
1,608,704	-		LRK54_RS07465	0.28	-0.6
1,608,779	+		LRK54_RS07465	0.42	+0.2
1,608,779	+		LRK54_RS07465	0.42	-0.7
1,608,780	-		LRK54_RS07465	0.42	-0.6
1,608,780	-		LRK54_RS07465	0.42	-0.7
1,608,780	-		LRK54_RS07465	0.42	-0.3
1,608,949	+		LRK54_RS07465	0.74	-1.5
1,608,950	-		LRK54_RS07465	0.74	-1.3
1,608,950	-		LRK54_RS07465	0.74	+0.2
1,608,991	+		LRK54_RS07465	0.82	-1.1
1,608,991	+		LRK54_RS07465	0.82	-1.4
1,608,991	+		LRK54_RS07465	0.82	-2.5
1,608,991	+		LRK54_RS07465	0.82	+0.6
1,608,992	-		LRK54_RS07465	0.82	-1.0
1,609,040	+				-1.1
1,609,040	+				+1.1
1,609,040	+				-1.7
1,609,249	+		LRK54_RS07470	0.40	+1.5
1,609,249	+		LRK54_RS07470	0.40	-1.0
1,609,249	+		LRK54_RS07470	0.40	-0.0
1,609,249	+		LRK54_RS07470	0.40	+0.5
1,609,249	+		LRK54_RS07470	0.40	-0.7
1,609,250	-		LRK54_RS07470	0.40	+0.3
1,609,250	-		LRK54_RS07470	0.40	+1.2
1,609,250	-		LRK54_RS07470	0.40	-0.2
1,609,260	+		LRK54_RS07470	0.43	-0.5
1,609,260	+		LRK54_RS07470	0.43	+0.8
1,609,260	+		LRK54_RS07470	0.43	-0.2
1,609,261	-		LRK54_RS07470	0.43	-0.9
1,609,261	-		LRK54_RS07470	0.43	-1.0
1,609,261	-		LRK54_RS07470	0.43	+0.7
1,609,261	-		LRK54_RS07470	0.43	-1.0
1,609,261	-		LRK54_RS07470	0.43	+0.1
1,609,261	-		LRK54_RS07470	0.43	+0.1
1,609,332	+		LRK54_RS07470	0.60	+0.2
1,609,333	-		LRK54_RS07470	0.61	-0.4
1,609,333	-		LRK54_RS07470	0.61	-1.1
1,609,360	+		LRK54_RS07470	0.67	+0.7
1,609,360	+		LRK54_RS07470	0.67	-0.7
1,609,360	+		LRK54_RS07470	0.67	-0.4
1,609,360	+		LRK54_RS07470	0.67	-0.5
1,609,361	-		LRK54_RS07470	0.67	-1.2
1,609,361	-		LRK54_RS07470	0.67	+0.1
1,609,361	-		LRK54_RS07470	0.67	-0.7
1,609,374	+		LRK54_RS07470	0.71	+2.3
1,609,374	+		LRK54_RS07470	0.71	-0.5
1,609,374	+		LRK54_RS07470	0.71	+1.5
1,609,374	+		LRK54_RS07470	0.71	-0.2
1,609,375	-		LRK54_RS07470	0.71	-0.2
1,609,375	-		LRK54_RS07470	0.71	+1.0
1,609,375	-		LRK54_RS07470	0.71	-1.0
1,609,541	+				-0.6
1,609,541	+				-1.5
1,609,541	+				+0.4
1,609,541	+				-0.5
1,609,541	+				+1.2
1,609,541	+				+0.8
1,609,541	+				-1.0
1,609,541	+				-0.4
1,609,541	+				+0.4
1,609,541	+				-1.1
1,609,542	-				-1.2
1,609,542	-				+1.5
1,609,542	-				+0.5
1,609,542	-				+0.8
1,609,542	-				-1.3
1,609,542	-				-1.5
1,609,542	-				-0.7
1,609,542	-				-0.1
1,609,542	-				-0.1
1,609,542	-				-0.9
1,609,542	-				+0.5
1,609,562	+				-0.2
1,609,562	+				-0.4
1,609,562	+				+1.5
1,609,562	+				-0.8
1,609,562	+				-0.7
1,609,563	-				+0.5
1,609,606	-				+0.5
1,609,648	-				+0.2
1,609,648	-				-1.3
1,609,675	+				-0.5
1,609,675	+				+0.5
1,609,675	+				+0.9
1,609,675	+				-1.1
1,609,675	+				+0.1
1,609,676	-				+0.2
1,609,676	-				+0.8
1,609,676	-				-0.4
1,609,676	-				-1.1
1,609,676	-				+0.7
1,609,676	-				-0.0
1,609,676	-				-0.7
1,609,676	-				-0.4
1,609,676	-				+0.7
1,609,676	-				-0.2
1,609,739	+		LRK54_RS07475	0.12	+0.0
1,609,739	+		LRK54_RS07475	0.12	+0.6
1,609,739	+		LRK54_RS07475	0.12	-1.3
1,609,739	+		LRK54_RS07475	0.12	-0.5
1,609,739	+		LRK54_RS07475	0.12	+0.9
1,609,740	-		LRK54_RS07475	0.12	-0.5
1,609,748	+		LRK54_RS07475	0.12	+1.0
1,609,748	+		LRK54_RS07475	0.12	-0.5
1,609,748	+		LRK54_RS07475	0.12	-0.5
1,609,748	+		LRK54_RS07475	0.12	+0.4
1,609,748	+		LRK54_RS07475	0.12	-1.0
1,609,749	-		LRK54_RS07475	0.12	+0.9
1,609,749	-		LRK54_RS07475	0.12	+0.5
1,609,749	-		LRK54_RS07475	0.12	+1.0
1,609,749	-		LRK54_RS07475	0.12	-0.3
1,609,749	-		LRK54_RS07475	0.12	+0.6
1,609,749	-		LRK54_RS07475	0.12	-0.0
1,609,799	+		LRK54_RS07475	0.15	-0.7
1,609,799	+		LRK54_RS07475	0.15	-1.4
1,609,799	+		LRK54_RS07475	0.15	+0.9
1,609,799	+		LRK54_RS07475	0.15	+0.4
1,609,799	+		LRK54_RS07475	0.15	+0.7
1,609,799	+		LRK54_RS07475	0.15	-0.8
1,609,799	+		LRK54_RS07475	0.15	+0.3
1,609,799	+		LRK54_RS07475	0.15	+0.1
1,609,799	+		LRK54_RS07475	0.15	+2.5
1,609,799	+		LRK54_RS07475	0.15	-0.2
1,609,799	+		LRK54_RS07475	0.15	+1.2
1,609,799	+		LRK54_RS07475	0.15	-0.4
1,609,800	-		LRK54_RS07475	0.15	-0.9
1,609,800	-		LRK54_RS07475	0.15	-1.3
1,609,800	-		LRK54_RS07475	0.15	-0.3
1,609,800	-		LRK54_RS07475	0.15	-0.8
1,609,800	-		LRK54_RS07475	0.15	+0.1
1,609,800	-		LRK54_RS07475	0.15	+0.1
1,609,800	-		LRK54_RS07475	0.15	-1.1
1,609,800	-		LRK54_RS07475	0.15	+0.5
1,609,800	-		LRK54_RS07475	0.15	-0.1
1,609,800	-		LRK54_RS07475	0.15	-1.0
1,609,800	-		LRK54_RS07475	0.15	-0.3
1,609,800	-		LRK54_RS07475	0.15	-0.5
1,609,800	-		LRK54_RS07475	0.15	+0.5
1,609,800	-		LRK54_RS07475	0.15	-0.7
1,609,800	-		LRK54_RS07475	0.15	-0.1
1,609,883	+		LRK54_RS07475	0.20	-0.1
1,609,884	-		LRK54_RS07475	0.20	+1.0
1,609,884	-		LRK54_RS07475	0.20	-1.2
1,609,884	-		LRK54_RS07475	0.20	+0.4
1,609,988	+		LRK54_RS07475	0.26	-0.8
1,609,988	+		LRK54_RS07475	0.26	-0.1
1,609,988	+		LRK54_RS07475	0.26	+0.1
1,609,988	+		LRK54_RS07475	0.26	-1.0
1,609,988	+		LRK54_RS07475	0.26	-0.3
1,609,988	+		LRK54_RS07475	0.26	-1.2
1,609,989	-		LRK54_RS07475	0.26	+0.1
1,609,989	-		LRK54_RS07475	0.26	+1.3
1,609,989	-		LRK54_RS07475	0.26	-1.0
1,609,989	-		LRK54_RS07475	0.26	-0.4
1,610,031	-		LRK54_RS07475	0.28	-1.5
1,610,031	-		LRK54_RS07475	0.28	-0.6