Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06785

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
1,459,022	+				+0.3
1,459,022	+				+2.5
1,459,022	+				-1.9
1,459,022	+				+1.4
1,459,022	+				-1.1
1,459,022	+				+2.1
1,459,022	+				-0.3
1,459,022	+				+0.4
1,459,023	-				-0.9
1,459,023	-				+0.3
1,459,023	-				-0.4
1,459,023	-				+1.9
1,459,023	-				-0.6
1,459,023	-				-2.0
1,459,023	-				-1.0
1,459,023	-				-0.1
1,459,023	-				-0.1
1,459,023	-				-2.2
1,459,023	-				+0.1
1,459,023	-				+0.2
1,459,023	-				+0.9
1,459,023	-				+0.4
1,459,484	+		LRK54_RS06780	0.53	+1.5
1,459,484	+		LRK54_RS06780	0.53	+0.1
1,459,484	+		LRK54_RS06780	0.53	-0.3
1,459,484	+		LRK54_RS06780	0.53	-0.5
1,459,484	+		LRK54_RS06780	0.53	+1.4
1,459,484	+		LRK54_RS06780	0.53	+1.8
1,459,484	+		LRK54_RS06780	0.53	-0.3
1,459,484	+		LRK54_RS06780	0.53	+0.2
1,459,484	+		LRK54_RS06780	0.53	-1.6
1,459,484	+		LRK54_RS06780	0.53	+0.1
1,459,484	+		LRK54_RS06780	0.53	-2.2
1,459,484	+		LRK54_RS06780	0.53	+0.1
1,459,484	+		LRK54_RS06780	0.53	-1.2
1,459,484	+		LRK54_RS06780	0.53	-0.0
1,459,484	+		LRK54_RS06780	0.53	+1.7
1,459,484	+		LRK54_RS06780	0.53	+0.2
1,459,484	+		LRK54_RS06780	0.53	-0.3
1,459,484	+		LRK54_RS06780	0.53	+1.0
1,459,484	+		LRK54_RS06780	0.53	-0.5
1,459,484	+		LRK54_RS06780	0.53	+0.8
1,459,484	+		LRK54_RS06780	0.53	+0.2
1,459,484	+		LRK54_RS06780	0.53	-0.8
1,459,484	+		LRK54_RS06780	0.53	-1.6
1,459,484	+		LRK54_RS06780	0.53	-1.5
1,459,484	+		LRK54_RS06780	0.53	-1.0
1,459,484	+		LRK54_RS06780	0.53	-1.1
1,459,484	+		LRK54_RS06780	0.53	+0.9
1,459,484	+		LRK54_RS06780	0.53	+0.9
1,459,484	+		LRK54_RS06780	0.53	+0.9
1,459,484	+		LRK54_RS06780	0.53	-1.0
1,459,484	+		LRK54_RS06780	0.53	+1.9
1,459,484	+		LRK54_RS06780	0.53	+0.8
1,459,484	+		LRK54_RS06780	0.53	-1.2
1,459,484	+		LRK54_RS06780	0.53	+1.2
1,459,484	+		LRK54_RS06780	0.53	+0.1
1,459,484	+		LRK54_RS06780	0.53	-1.5
1,459,484	+		LRK54_RS06780	0.53	+0.3
1,459,484	+		LRK54_RS06780	0.53	+3.5
1,459,484	+		LRK54_RS06780	0.53	-0.8
1,459,484	+		LRK54_RS06780	0.53	-1.3
1,459,484	+		LRK54_RS06780	0.53	-2.0
1,459,484	+		LRK54_RS06780	0.53	-1.4
1,459,485	-		LRK54_RS06780	0.53	+0.8
1,459,485	-		LRK54_RS06780	0.53	-0.5
1,459,485	-		LRK54_RS06780	0.53	-0.3
1,459,485	-		LRK54_RS06780	0.53	-1.1
1,459,485	-		LRK54_RS06780	0.53	+0.7
1,459,485	-		LRK54_RS06780	0.53	-1.8
1,459,485	-		LRK54_RS06780	0.53	+0.7
1,459,485	-		LRK54_RS06780	0.53	+4.1
1,459,485	-		LRK54_RS06780	0.53	-1.0
1,459,485	-		LRK54_RS06780	0.53	-0.8
1,459,485	-		LRK54_RS06780	0.53	-0.3
1,459,485	-		LRK54_RS06780	0.53	-1.5
1,459,485	-		LRK54_RS06780	0.53	+1.5
1,459,485	-		LRK54_RS06780	0.53	+1.9
1,459,485	-		LRK54_RS06780	0.53	+0.9
1,459,485	-		LRK54_RS06780	0.53	+0.2
1,459,485	-		LRK54_RS06780	0.53	+0.4
1,459,485	-		LRK54_RS06780	0.53	-1.0
1,459,485	-		LRK54_RS06780	0.53	+1.9
1,459,485	-		LRK54_RS06780	0.53	+1.0
1,459,485	-		LRK54_RS06780	0.53	-0.0
1,459,485	-		LRK54_RS06780	0.53	+0.7
1,459,485	-		LRK54_RS06780	0.53	-1.6
1,459,485	-		LRK54_RS06780	0.53	+0.6
1,459,485	-		LRK54_RS06780	0.53	+0.2
1,459,485	-		LRK54_RS06780	0.53	-1.7
1,459,485	-		LRK54_RS06780	0.53	+0.6
1,459,485	-		LRK54_RS06780	0.53	-0.9
1,459,485	-		LRK54_RS06780	0.53	-2.3
1,459,485	-		LRK54_RS06780	0.53	-0.0
1,459,485	-		LRK54_RS06780	0.53	+0.2
1,459,485	-		LRK54_RS06780	0.53	-2.7
1,459,485	-		LRK54_RS06780	0.53	-0.0
1,459,485	-		LRK54_RS06780	0.53	-0.2
1,459,485	-		LRK54_RS06780	0.53	-0.1
1,459,485	-		LRK54_RS06780	0.53	-0.4
1,459,485	-		LRK54_RS06780	0.53	-0.2
1,459,485	-		LRK54_RS06780	0.53	+0.4
1,459,485	-		LRK54_RS06780	0.53	-0.7
1,459,485	-		LRK54_RS06780	0.53	+0.1
1,459,485	-		LRK54_RS06780	0.53	-0.2
1,459,485	-		LRK54_RS06780	0.53	+0.5
1,459,491	-		LRK54_RS06780	0.54	-0.8
1,459,491	-		LRK54_RS06780	0.54	+1.0
1,459,502	+		LRK54_RS06780	0.55	-0.7
1,459,502	+		LRK54_RS06780	0.55	-0.2
1,459,502	+		LRK54_RS06780	0.55	+1.0
1,459,502	+		LRK54_RS06780	0.55	+0.7
1,459,502	+		LRK54_RS06780	0.55	+1.2
1,459,502	+		LRK54_RS06780	0.55	+1.2
1,459,502	+		LRK54_RS06780	0.55	+0.5
1,459,502	+		LRK54_RS06780	0.55	+1.1
1,459,502	+		LRK54_RS06780	0.55	-0.7
1,459,502	+		LRK54_RS06780	0.55	-0.1
1,459,502	+		LRK54_RS06780	0.55	+0.8
1,459,502	+		LRK54_RS06780	0.55	-0.6
1,459,502	+		LRK54_RS06780	0.55	-0.6
1,459,502	+		LRK54_RS06780	0.55	-0.4
1,459,502	+		LRK54_RS06780	0.55	+0.3
1,459,502	+		LRK54_RS06780	0.55	-0.5
1,459,502	+		LRK54_RS06780	0.55	-0.5
1,459,502	+		LRK54_RS06780	0.55	+0.5
1,459,502	+		LRK54_RS06780	0.55	-0.3
1,459,502	+		LRK54_RS06780	0.55	-0.3
1,459,502	+		LRK54_RS06780	0.55	-2.1
1,459,502	+		LRK54_RS06780	0.55	+0.4
1,459,502	+		LRK54_RS06780	0.55	+1.3
1,459,502	+		LRK54_RS06780	0.55	-0.2
1,459,502	+		LRK54_RS06780	0.55	+0.7
1,459,502	+		LRK54_RS06780	0.55	-0.1
1,459,502	+		LRK54_RS06780	0.55	-0.4
1,459,502	+		LRK54_RS06780	0.55	+0.7
1,459,503	-		LRK54_RS06780	0.55	-0.4
1,459,503	-		LRK54_RS06780	0.55	-0.8
1,459,503	-		LRK54_RS06780	0.55	-1.3
1,459,503	-		LRK54_RS06780	0.55	+0.2
1,459,503	-		LRK54_RS06780	0.55	-0.2
1,459,503	-		LRK54_RS06780	0.55	-1.2
1,459,503	-		LRK54_RS06780	0.55	+0.3
1,459,503	-		LRK54_RS06780	0.55	-0.9
1,459,503	-		LRK54_RS06780	0.55	+0.5
1,459,503	-		LRK54_RS06780	0.55	+0.4
1,459,503	-		LRK54_RS06780	0.55	-2.2
1,459,503	-		LRK54_RS06780	0.55	-1.9
1,459,503	-		LRK54_RS06780	0.55	-2.1
1,459,503	-		LRK54_RS06780	0.55	-0.6
1,459,503	-		LRK54_RS06780	0.55	+0.3
1,459,503	-		LRK54_RS06780	0.55	-0.4
1,459,503	-		LRK54_RS06780	0.55	+0.2
1,459,503	-		LRK54_RS06780	0.55	-0.2
1,459,503	-		LRK54_RS06780	0.55	+0.2
1,459,503	-		LRK54_RS06780	0.55	+0.1
1,459,503	-		LRK54_RS06780	0.55	+0.9
1,459,503	-		LRK54_RS06780	0.55	+1.4
1,459,503	-		LRK54_RS06780	0.55	-0.8
1,459,503	-		LRK54_RS06780	0.55	+0.5
1,459,503	-		LRK54_RS06780	0.55	-0.9
1,459,503	-		LRK54_RS06780	0.55	+0.3
1,459,503	-		LRK54_RS06780	0.55	-2.8
1,459,503	-		LRK54_RS06780	0.55	+2.5
1,459,503	-		LRK54_RS06780	0.55	-0.2
1,459,503	-		LRK54_RS06780	0.55	-0.6
1,459,503	-		LRK54_RS06780	0.55	+0.0
1,459,503	-		LRK54_RS06780	0.55	+0.1
1,459,503	-		LRK54_RS06780	0.55	+0.2
1,459,503	-		LRK54_RS06780	0.55	+0.6
1,459,503	-		LRK54_RS06780	0.55	+0.1
1,459,503	-		LRK54_RS06780	0.55	-0.6
1,459,676	+		LRK54_RS06780	0.75	+0.5
1,459,676	+		LRK54_RS06780	0.75	+0.7
1,459,676	+		LRK54_RS06780	0.75	-0.0
1,459,676	+		LRK54_RS06780	0.75	+0.6
1,459,676	+		LRK54_RS06780	0.75	+0.2
1,459,676	+		LRK54_RS06780	0.75	-0.4
1,459,676	+		LRK54_RS06780	0.75	-1.1
1,459,676	+		LRK54_RS06780	0.75	+0.0
1,459,676	+		LRK54_RS06780	0.75	-1.5
1,459,676	+		LRK54_RS06780	0.75	-1.0
1,459,676	+		LRK54_RS06780	0.75	-1.2
1,459,676	+		LRK54_RS06780	0.75	+0.9
1,459,676	+		LRK54_RS06780	0.75	-0.8
1,459,676	+		LRK54_RS06780	0.75	-0.3
1,459,676	+		LRK54_RS06780	0.75	+0.9
1,459,676	+		LRK54_RS06780	0.75	-0.6
1,459,676	+		LRK54_RS06780	0.75	-1.3
1,459,676	+		LRK54_RS06780	0.75	-1.0
1,459,676	+		LRK54_RS06780	0.75	-0.5
1,459,676	+		LRK54_RS06780	0.75	-0.8
1,459,676	+		LRK54_RS06780	0.75	-0.5
1,459,676	+		LRK54_RS06780	0.75	-1.4
1,459,677	-		LRK54_RS06780	0.75	-2.4
1,459,677	-		LRK54_RS06780	0.75	-1.6
1,459,677	-		LRK54_RS06780	0.75	-1.1
1,459,677	-		LRK54_RS06780	0.75	-0.3
1,459,677	-		LRK54_RS06780	0.75	+0.5
1,459,677	-		LRK54_RS06780	0.75	-0.1
1,459,677	-		LRK54_RS06780	0.75	-0.1
1,459,677	-		LRK54_RS06780	0.75	+2.5
1,459,677	-		LRK54_RS06780	0.75	+0.3
1,459,677	-		LRK54_RS06780	0.75	+0.2
1,459,677	-		LRK54_RS06780	0.75	-0.5
1,459,677	-		LRK54_RS06780	0.75	-1.0
1,459,677	-		LRK54_RS06780	0.75	+0.1
1,459,677	-		LRK54_RS06780	0.75	-0.3
1,459,677	-		LRK54_RS06780	0.75	+0.7
1,459,677	-		LRK54_RS06780	0.75	+0.6
1,459,677	-		LRK54_RS06780	0.75	+0.2
1,459,677	-		LRK54_RS06780	0.75	-1.5
1,459,677	-		LRK54_RS06780	0.75	-0.6
1,459,677	-		LRK54_RS06780	0.75	-1.0
1,459,677	-		LRK54_RS06780	0.75	+1.6
1,459,677	-		LRK54_RS06780	0.75	+0.5
1,459,677	-		LRK54_RS06780	0.75	+0.9
1,459,677	-		LRK54_RS06780	0.75	-0.3
1,459,677	-		LRK54_RS06780	0.75	+0.6
1,459,677	-		LRK54_RS06780	0.75	-2.3
1,459,677	-		LRK54_RS06780	0.75	+2.5
1,459,677	-		LRK54_RS06780	0.75	-1.6
1,459,677	-		LRK54_RS06780	0.75	+0.9
1,459,677	-		LRK54_RS06780	0.75	-0.9
1,459,677	-		LRK54_RS06780	0.75	-0.3
1,459,736	+		LRK54_RS06780	0.81	+0.9
1,459,736	+		LRK54_RS06780	0.81	+0.7
1,459,736	+		LRK54_RS06780	0.81	-0.4
1,459,737	-		LRK54_RS06780	0.81	-1.5
1,459,901	+				-0.4
1,459,901	+				-0.8
1,459,901	+				-0.3
1,459,901	+				+2.2
1,459,901	+				-0.0
1,459,901	+				-0.6
1,459,901	+				+0.5
1,459,901	+				+1.8
1,459,901	+				+0.3
1,459,901	+				-1.1
1,459,901	+				+0.3
1,459,901	+				+0.9
1,459,901	+				+1.0
1,459,901	+				-0.3
1,459,901	+				-0.2
1,459,901	+				-0.0
1,459,901	+				-0.1
1,459,901	+				-1.0
1,459,901	+				-0.7
1,459,901	+				-0.1
1,459,901	+				-1.4
1,459,901	+				-1.8
1,459,901	+				+0.6
1,459,901	+				-0.7
1,459,901	+				+0.3
1,459,901	+				-0.8
1,459,901	+				-0.8
1,459,901	+				-0.7
1,459,901	+				-0.1
1,459,901	+				-1.6
1,459,901	+				-1.1
1,459,901	+				+1.0
1,459,901	+				+2.5
1,459,901	+				+1.1
1,459,901	+				-2.0
1,459,901	+				-0.3
1,459,901	+				-0.9
1,459,901	+				-0.5
1,459,901	+				-0.2
1,459,901	+				-0.5
1,459,901	+				-1.0
1,459,901	+				+0.7
1,459,901	+				-1.0
1,459,901	+				+0.9
1,459,901	+				-0.5
1,459,901	+				+0.3
1,459,901	+				+1.5
1,459,901	+				-1.4
1,459,901	+				-0.8
1,459,901	+				-1.6
1,459,901	+				-2.3
1,459,901	+				-1.1
1,459,901	+				+0.1
1,459,901	+				-1.6
1,459,901	+				-0.2
1,459,901	+				-2.1
1,459,901	+				-2.0
1,459,901	+				-0.6
1,459,901	+				-0.4
1,459,901	+				-0.8
1,459,901	+				-0.6
1,459,901	+				-1.6
1,459,901	+				+1.2
1,459,901	+				+1.0
1,459,901	+				-0.9
1,459,901	+				-0.4
1,459,902	-				-0.2
1,459,902	-				+0.1
1,459,902	-				+0.1
1,459,902	-				-0.3
1,459,902	-				+0.5
1,459,902	-				+0.3
1,459,902	-				+1.3
1,459,902	-				+0.2
1,459,902	-				-0.7
1,459,902	-				+0.9
1,459,902	-				-0.8
1,459,902	-				-1.0
1,459,902	-				-2.5
1,459,902	-				+0.6
1,459,902	-				-1.1
1,459,902	-				-0.8
1,459,902	-				-0.7
1,459,902	-				-1.4
1,459,902	-				-0.3
1,459,902	-				+0.3
1,459,902	-				-0.2
1,459,902	-				+0.2
1,459,902	-				+0.3
1,459,902	-				-1.4
1,459,902	-				-1.5
1,459,902	-				-0.1
1,459,902	-				-1.5
1,459,902	-				+0.1
1,459,902	-				-1.4
1,459,902	-				+0.2
1,459,902	-				-1.4
1,459,902	-				+0.5
1,459,902	-				+0.4
1,459,902	-				+1.1
1,459,902	-				+0.4
1,459,902	-				-1.1
1,459,902	-				+1.7
1,459,902	-				-0.3
1,459,902	-				+0.4
1,459,902	-				-0.1
1,459,902	-				+0.2
1,459,902	-				+0.9
1,459,902	-				-0.3
1,459,902	-				-1.4
1,459,902	-				+0.3
1,459,902	-				+1.1
1,459,902	-				-0.1
1,459,902	-				-1.1
1,459,902	-				-0.6
1,459,902	-				-0.2
1,459,902	-				-0.3
1,459,902	-				+2.8
1,459,902	-				+1.1
1,459,902	-				-0.7
1,459,902	-				+1.0
1,459,902	-				-0.1
1,459,938	+				-1.4
1,459,939	-				-1.4
1,459,939	-				-0.5
1,460,097	+				+0.3
1,460,097	+				+0.0
1,460,097	+				-1.5
1,460,166	+				-0.3
1,460,166	+				+1.5
1,460,166	+				+0.2
1,460,166	+				-0.7
1,460,166	+				-1.2
1,460,166	+				+0.5
1,460,167	-				-1.1
1,460,280	+		LRK54_RS06785	0.14	+0.9
1,460,281	-		LRK54_RS06785	0.14	+0.5
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