Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4892

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4891 and Ac3H11_4892 are separated by 117 nucleotidesAc3H11_4892 and Ac3H11_4893 are separated by 152 nucleotides Ac3H11_4891 - Uracil permease, at 57,552 to 58,838 _4891 Ac3H11_4892 - Acetyl-CoA hydrolase (EC 3.1.2.1), at 58,956 to 60,497 _4892 Ac3H11_4893 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 60,650 to 61,801 _4893 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 58.176 kb on + strand, within Ac3H11_4891at 58.176 kb on + strand, within Ac3H11_4891at 58.176 kb on + strand, within Ac3H11_4891at 58.176 kb on + strand, within Ac3H11_4891at 58.176 kb on + strand, within Ac3H11_4891at 58.176 kb on + strand, within Ac3H11_4891at 58.389 kb on + strand, within Ac3H11_4891at 58.389 kb on + strand, within Ac3H11_4891at 58.389 kb on + strand, within Ac3H11_4891at 58.390 kb on - strand, within Ac3H11_4891at 58.390 kb on - strand, within Ac3H11_4891at 58.390 kb on - strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.467 kb on + strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.468 kb on - strand, within Ac3H11_4891at 58.506 kb on + strand, within Ac3H11_4891at 58.506 kb on + strand, within Ac3H11_4891at 58.506 kb on + strand, within Ac3H11_4891at 58.506 kb on + strand, within Ac3H11_4891at 58.507 kb on - strand, within Ac3H11_4891at 58.507 kb on - strand, within Ac3H11_4891at 58.507 kb on - strand, within Ac3H11_4891at 58.507 kb on - strand, within Ac3H11_4891at 58.507 kb on - strand, within Ac3H11_4891at 58.507 kb on - strand, within Ac3H11_4891at 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.812 kb on + strandat 58.813 kb on - strandat 58.813 kb on - strandat 58.818 kb on + strandat 58.849 kb on - strandat 58.849 kb on - strandat 58.849 kb on - strandat 58.855 kb on + strandat 58.869 kb on + strandat 58.869 kb on + strandat 58.869 kb on + strandat 58.870 kb on - strandat 58.870 kb on - strandat 58.884 kb on - strandat 59.279 kb on + strand, within Ac3H11_4892at 59.279 kb on + strand, within Ac3H11_4892at 59.279 kb on + strand, within Ac3H11_4892at 59.279 kb on + strand, within Ac3H11_4892at 59.280 kb on - strand, within Ac3H11_4892at 59.280 kb on - strand, within Ac3H11_4892at 59.280 kb on - strand, within Ac3H11_4892at 59.280 kb on - strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.286 kb on + strand, within Ac3H11_4892at 59.287 kb on - strand, within Ac3H11_4892at 59.287 kb on - strand, within Ac3H11_4892at 59.287 kb on - strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.508 kb on + strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.509 kb on - strand, within Ac3H11_4892at 59.512 kb on - strand, within Ac3H11_4892at 59.583 kb on + strand, within Ac3H11_4892at 59.584 kb on - strand, within Ac3H11_4892at 59.584 kb on - strand, within Ac3H11_4892at 59.653 kb on - strand, within Ac3H11_4892at 59.833 kb on - strand, within Ac3H11_4892at 59.955 kb on + strand, within Ac3H11_4892at 59.955 kb on + strand, within Ac3H11_4892at 59.955 kb on + strand, within Ac3H11_4892at 59.955 kb on + strand, within Ac3H11_4892at 59.956 kb on - strand, within Ac3H11_4892at 59.956 kb on - strand, within Ac3H11_4892at 59.958 kb on + strand, within Ac3H11_4892at 59.958 kb on + strand, within Ac3H11_4892at 59.958 kb on + strand, within Ac3H11_4892at 59.959 kb on - strand, within Ac3H11_4892at 59.959 kb on - strand, within Ac3H11_4892at 59.959 kb on - strand, within Ac3H11_4892at 59.959 kb on - strand, within Ac3H11_4892at 60.063 kb on + strand, within Ac3H11_4892at 60.064 kb on - strand, within Ac3H11_4892at 60.064 kb on - strand, within Ac3H11_4892at 60.064 kb on - strand, within Ac3H11_4892at 60.147 kb on + strand, within Ac3H11_4892at 60.147 kb on + strand, within Ac3H11_4892at 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.363 kb on + strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.364 kb on - strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.444 kb on + strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.445 kb on - strandat 60.564 kb on - strandat 60.564 kb on - strandat 60.569 kb on + strandat 60.570 kb on - strandat 60.570 kb on - strandat 60.906 kb on - strand, within Ac3H11_4893at 60.906 kb on - strand, within Ac3H11_4893at 61.037 kb on + strand, within Ac3H11_4893at 61.037 kb on + strand, within Ac3H11_4893at 61.037 kb on + strand, within Ac3H11_4893at 61.037 kb on + strand, within Ac3H11_4893at 61.038 kb on - strand, within Ac3H11_4893at 61.038 kb on - strand, within Ac3H11_4893at 61.038 kb on - strand, within Ac3H11_4893at 61.038 kb on - strand, within Ac3H11_4893at 61.112 kb on + strand, within Ac3H11_4893at 61.113 kb on - strand, within Ac3H11_4893at 61.113 kb on - strand, within Ac3H11_4893at 61.181 kb on + strand, within Ac3H11_4893

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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58,176 + Ac3H11_4891 0.48 +1.2
58,176 + Ac3H11_4891 0.48 -3.0
58,176 + Ac3H11_4891 0.48 -0.7
58,176 + Ac3H11_4891 0.48 +0.0
58,176 + Ac3H11_4891 0.48 -2.3
58,176 + Ac3H11_4891 0.48 -0.7
58,389 + Ac3H11_4891 0.65 -0.8
58,389 + Ac3H11_4891 0.65 -1.1
58,389 + Ac3H11_4891 0.65 +1.0
58,390 - Ac3H11_4891 0.65 +0.0
58,390 - Ac3H11_4891 0.65 -0.7
58,390 - Ac3H11_4891 0.65 -2.8
58,467 + Ac3H11_4891 0.71 -1.0
58,467 + Ac3H11_4891 0.71 -0.7
58,467 + Ac3H11_4891 0.71 -1.8
58,467 + Ac3H11_4891 0.71 +0.1
58,467 + Ac3H11_4891 0.71 -0.5
58,467 + Ac3H11_4891 0.71 -0.8
58,467 + Ac3H11_4891 0.71 +0.1
58,467 + Ac3H11_4891 0.71 -1.0
58,468 - Ac3H11_4891 0.71 -0.7
58,468 - Ac3H11_4891 0.71 -0.9
58,468 - Ac3H11_4891 0.71 -3.2
58,468 - Ac3H11_4891 0.71 +0.5
58,468 - Ac3H11_4891 0.71 -0.8
58,468 - Ac3H11_4891 0.71 +0.4
58,468 - Ac3H11_4891 0.71 +0.4
58,468 - Ac3H11_4891 0.71 +0.4
58,468 - Ac3H11_4891 0.71 -0.4
58,468 - Ac3H11_4891 0.71 +0.3
58,506 + Ac3H11_4891 0.74 -1.0
58,506 + Ac3H11_4891 0.74 +0.1
58,506 + Ac3H11_4891 0.74 +0.5
58,506 + Ac3H11_4891 0.74 -0.2
58,507 - Ac3H11_4891 0.74 +0.2
58,507 - Ac3H11_4891 0.74 -0.1
58,507 - Ac3H11_4891 0.74 +1.4
58,507 - Ac3H11_4891 0.74 +0.4
58,507 - Ac3H11_4891 0.74 -2.4
58,507 - Ac3H11_4891 0.74 -1.0
58,812 + -0.1
58,812 + +2.2
58,812 + -0.2
58,812 + -1.6
58,812 + -2.1
58,812 + +0.7
58,812 + +0.1
58,812 + -2.9
58,812 + -2.2
58,813 - +1.3
58,813 - +0.9
58,818 + +1.2
58,849 - -0.5
58,849 - +0.8
58,849 - -1.8
58,855 + +1.4
58,869 + +0.5
58,869 + +0.4
58,869 + +0.7
58,870 - +0.5
58,870 - -0.5
58,884 - -0.4
59,279 + Ac3H11_4892 0.21 +0.0
59,279 + Ac3H11_4892 0.21 -0.6
59,279 + Ac3H11_4892 0.21 +0.6
59,279 + Ac3H11_4892 0.21 -1.5
59,280 - Ac3H11_4892 0.21 +2.1
59,280 - Ac3H11_4892 0.21 -1.1
59,280 - Ac3H11_4892 0.21 +0.8
59,280 - Ac3H11_4892 0.21 +0.5
59,286 + Ac3H11_4892 0.21 -1.4
59,286 + Ac3H11_4892 0.21 +0.3
59,286 + Ac3H11_4892 0.21 -0.2
59,286 + Ac3H11_4892 0.21 +0.2
59,286 + Ac3H11_4892 0.21 +0.0
59,286 + Ac3H11_4892 0.21 -2.7
59,286 + Ac3H11_4892 0.21 -0.6
59,286 + Ac3H11_4892 0.21 +0.3
59,287 - Ac3H11_4892 0.21 +0.1
59,287 - Ac3H11_4892 0.21 +0.3
59,287 - Ac3H11_4892 0.21 -0.4
59,508 + Ac3H11_4892 0.36 +0.7
59,508 + Ac3H11_4892 0.36 +0.2
59,508 + Ac3H11_4892 0.36 +1.5
59,508 + Ac3H11_4892 0.36 +0.7
59,508 + Ac3H11_4892 0.36 -0.2
59,508 + Ac3H11_4892 0.36 -0.1
59,508 + Ac3H11_4892 0.36 +1.9
59,508 + Ac3H11_4892 0.36 +0.6
59,508 + Ac3H11_4892 0.36 +2.8
59,508 + Ac3H11_4892 0.36 +0.5
59,508 + Ac3H11_4892 0.36 -0.1
59,508 + Ac3H11_4892 0.36 -0.6
59,508 + Ac3H11_4892 0.36 -1.0
59,508 + Ac3H11_4892 0.36 +0.9
59,508 + Ac3H11_4892 0.36 +0.3
59,508 + Ac3H11_4892 0.36 -0.1
59,509 - Ac3H11_4892 0.36 +1.0
59,509 - Ac3H11_4892 0.36 +0.3
59,509 - Ac3H11_4892 0.36 +0.1
59,509 - Ac3H11_4892 0.36 +1.0
59,509 - Ac3H11_4892 0.36 +0.1
59,509 - Ac3H11_4892 0.36 -0.9
59,509 - Ac3H11_4892 0.36 +0.6
59,509 - Ac3H11_4892 0.36 -2.3
59,512 - Ac3H11_4892 0.36 +1.1
59,583 + Ac3H11_4892 0.41 +0.6
59,584 - Ac3H11_4892 0.41 +0.4
59,584 - Ac3H11_4892 0.41 +0.3
59,653 - Ac3H11_4892 0.45 +0.8
59,833 - Ac3H11_4892 0.57 +0.2
59,955 + Ac3H11_4892 0.65 +0.3
59,955 + Ac3H11_4892 0.65 -0.8
59,955 + Ac3H11_4892 0.65 +0.4
59,955 + Ac3H11_4892 0.65 -0.4
59,956 - Ac3H11_4892 0.65 +1.7
59,956 - Ac3H11_4892 0.65 +0.2
59,958 + Ac3H11_4892 0.65 +0.3
59,958 + Ac3H11_4892 0.65 +0.1
59,958 + Ac3H11_4892 0.65 +1.0
59,959 - Ac3H11_4892 0.65 -1.3
59,959 - Ac3H11_4892 0.65 -1.0
59,959 - Ac3H11_4892 0.65 +0.5
59,959 - Ac3H11_4892 0.65 +0.7
60,063 + Ac3H11_4892 0.72 -0.2
60,064 - Ac3H11_4892 0.72 +0.9
60,064 - Ac3H11_4892 0.72 +1.8
60,064 - Ac3H11_4892 0.72 +0.0
60,147 + Ac3H11_4892 0.77 +0.7
60,147 + Ac3H11_4892 0.77 +0.5
60,363 + +1.1
60,363 + -0.6
60,363 + -0.4
60,363 + -0.2
60,363 + +1.0
60,363 + +0.9
60,363 + +1.2
60,363 + +0.3
60,363 + +0.7
60,363 + -1.0
60,364 - +1.8
60,364 - -1.0
60,364 - +1.4
60,364 - -1.9
60,364 - +0.2
60,364 - +1.9
60,364 - -0.2
60,364 - +0.4
60,364 - -0.2
60,364 - -0.4
60,364 - +0.9
60,364 - -0.5
60,364 - -0.8
60,364 - -0.5
60,364 - -0.8
60,364 - +0.3
60,364 - +2.9
60,364 - -0.6
60,444 + -0.6
60,444 + +0.5
60,444 + -1.6
60,444 + -0.3
60,444 + -2.2
60,444 + +0.9
60,444 + -0.2
60,444 + +1.0
60,444 + +1.2
60,445 - -0.2
60,445 - +0.7
60,445 - -1.3
60,445 - +0.0
60,445 - +1.0
60,445 - -0.4
60,445 - +0.4
60,445 - +0.8
60,564 - +0.0
60,564 - -0.7
60,569 + -0.2
60,570 - +0.3
60,570 - +0.9
60,906 - Ac3H11_4893 0.22 +0.7
60,906 - Ac3H11_4893 0.22 +0.3
61,037 + Ac3H11_4893 0.34 -0.6
61,037 + Ac3H11_4893 0.34 -0.4
61,037 + Ac3H11_4893 0.34 -0.7
61,037 + Ac3H11_4893 0.34 -0.5
61,038 - Ac3H11_4893 0.34 -0.4
61,038 - Ac3H11_4893 0.34 +0.5
61,038 - Ac3H11_4893 0.34 +0.6
61,038 - Ac3H11_4893 0.34 +0.3
61,112 + Ac3H11_4893 0.40 +0.6
61,113 - Ac3H11_4893 0.40 -0.3
61,113 - Ac3H11_4893 0.40 -0.9
61,181 + Ac3H11_4893 0.46 +1.1

Or see this region's nucleotide sequence