Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4872

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4871 and Ac3H11_4872 are separated by 119 nucleotidesAc3H11_4872 and Ac3H11_4873 are separated by 78 nucleotidesAc3H11_4873 and Ac3H11_4874 are separated by 46 nucleotides Ac3H11_4871 - hypothetical protein, at 31,729 to 33,435 _4871 Ac3H11_4872 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 33,555 to 34,166 _4872 Ac3H11_4873 - hypothetical protein, at 34,245 to 34,358 _4873 Ac3H11_4874 - VfmD protein, at 34,405 to 35,385 _4874 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.613 kb on + strand, within Ac3H11_4871at 32.613 kb on + strand, within Ac3H11_4871at 32.635 kb on + strand, within Ac3H11_4871at 32.635 kb on + strand, within Ac3H11_4871at 32.635 kb on + strand, within Ac3H11_4871at 32.636 kb on - strand, within Ac3H11_4871at 32.636 kb on - strand, within Ac3H11_4871at 32.686 kb on + strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.692 kb on + strand, within Ac3H11_4871at 32.692 kb on + strand, within Ac3H11_4871at 32.692 kb on + strand, within Ac3H11_4871at 32.693 kb on - strand, within Ac3H11_4871at 32.693 kb on - strand, within Ac3H11_4871at 32.693 kb on - strand, within Ac3H11_4871at 32.740 kb on + strand, within Ac3H11_4871at 32.741 kb on - strand, within Ac3H11_4871at 32.741 kb on - strand, within Ac3H11_4871at 32.752 kb on + strand, within Ac3H11_4871at 32.752 kb on + strand, within Ac3H11_4871at 32.752 kb on + strand, within Ac3H11_4871at 32.753 kb on - strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.854 kb on + strand, within Ac3H11_4871at 32.855 kb on - strand, within Ac3H11_4871at 32.855 kb on - strand, within Ac3H11_4871at 32.855 kb on - strand, within Ac3H11_4871at 32.888 kb on - strand, within Ac3H11_4871at 32.888 kb on - strand, within Ac3H11_4871at 32.888 kb on - strand, within Ac3H11_4871at 32.888 kb on - strand, within Ac3H11_4871at 32.950 kb on + strand, within Ac3H11_4871at 32.951 kb on - strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.045 kb on + strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.046 kb on - strand, within Ac3H11_4871at 33.049 kb on + strand, within Ac3H11_4871at 33.049 kb on + strand, within Ac3H11_4871at 33.049 kb on + strand, within Ac3H11_4871at 33.049 kb on + strand, within Ac3H11_4871at 33.049 kb on + strandat 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.050 kb on - strand, within Ac3H11_4871at 33.076 kb on + strand, within Ac3H11_4871at 33.076 kb on + strand, within Ac3H11_4871at 33.076 kb on + strand, within Ac3H11_4871at 33.077 kb on - strand, within Ac3H11_4871at 33.077 kb on - strand, within Ac3H11_4871at 33.094 kb on + strand, within Ac3H11_4871at 33.094 kb on + strand, within Ac3H11_4871at 33.095 kb on - strand, within Ac3H11_4871at 33.095 kb on - strand, within Ac3H11_4871at 33.167 kb on - strand, within Ac3H11_4871at 33.167 kb on - strand, within Ac3H11_4871at 33.224 kb on + strand, within Ac3H11_4871at 33.224 kb on + strand, within Ac3H11_4871at 33.224 kb on + strand, within Ac3H11_4871at 33.224 kb on + strand, within Ac3H11_4871at 33.224 kb on + strand, within Ac3H11_4871at 33.225 kb on - strand, within Ac3H11_4871at 33.225 kb on - strand, within Ac3H11_4871at 33.225 kb on - strand, within Ac3H11_4871at 33.319 kb on - strandat 33.422 kb on + strandat 33.422 kb on + strandat 33.422 kb on + strandat 33.423 kb on - strandat 33.423 kb on - strandat 33.423 kb on - strandat 33.879 kb on + strand, within Ac3H11_4872at 33.879 kb on + strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 34.047 kb on + strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.456 kb on + strandat 34.456 kb on + strandat 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.849 kb on + strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.898 kb on + strand, within Ac3H11_4874at 34.999 kb on + strand, within Ac3H11_4874at 34.999 kb on + strand, within Ac3H11_4874

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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32,613 + Ac3H11_4871 0.52 +0.0
32,613 + Ac3H11_4871 0.52 +0.9
32,635 + Ac3H11_4871 0.53 -0.5
32,635 + Ac3H11_4871 0.53 +0.3
32,635 + Ac3H11_4871 0.53 +0.2
32,636 - Ac3H11_4871 0.53 -1.0
32,636 - Ac3H11_4871 0.53 -0.1
32,686 + Ac3H11_4871 0.56 +1.1
32,687 - Ac3H11_4871 0.56 +0.2
32,687 - Ac3H11_4871 0.56 +0.3
32,687 - Ac3H11_4871 0.56 -0.8
32,687 - Ac3H11_4871 0.56 +0.6
32,687 - Ac3H11_4871 0.56 +0.4
32,687 - Ac3H11_4871 0.56 -0.8
32,692 + Ac3H11_4871 0.56 -0.9
32,692 + Ac3H11_4871 0.56 +1.9
32,692 + Ac3H11_4871 0.56 -0.0
32,693 - Ac3H11_4871 0.56 -1.2
32,693 - Ac3H11_4871 0.56 -0.1
32,693 - Ac3H11_4871 0.56 -3.0
32,740 + Ac3H11_4871 0.59 -0.7
32,741 - Ac3H11_4871 0.59 +0.0
32,741 - Ac3H11_4871 0.59 +0.6
32,752 + Ac3H11_4871 0.60 +1.1
32,752 + Ac3H11_4871 0.60 +0.2
32,752 + Ac3H11_4871 0.60 -1.2
32,753 - Ac3H11_4871 0.60 -0.4
32,854 + Ac3H11_4871 0.66 -0.1
32,854 + Ac3H11_4871 0.66 -0.2
32,854 + Ac3H11_4871 0.66 -0.2
32,854 + Ac3H11_4871 0.66 +1.0
32,854 + Ac3H11_4871 0.66 -0.1
32,854 + Ac3H11_4871 0.66 +0.9
32,854 + Ac3H11_4871 0.66 +0.1
32,854 + Ac3H11_4871 0.66 +0.8
32,854 + Ac3H11_4871 0.66 -1.3
32,855 - Ac3H11_4871 0.66 +0.3
32,855 - Ac3H11_4871 0.66 +0.1
32,855 - Ac3H11_4871 0.66 -0.2
32,888 - Ac3H11_4871 0.68 +0.5
32,888 - Ac3H11_4871 0.68 +1.2
32,888 - Ac3H11_4871 0.68 -0.7
32,888 - Ac3H11_4871 0.68 +0.9
32,950 + Ac3H11_4871 0.72 -0.9
32,951 - Ac3H11_4871 0.72 +0.3
33,045 + Ac3H11_4871 0.77 +0.8
33,045 + Ac3H11_4871 0.77 +1.2
33,045 + Ac3H11_4871 0.77 -0.2
33,045 + Ac3H11_4871 0.77 -2.9
33,045 + Ac3H11_4871 0.77 +0.3
33,045 + Ac3H11_4871 0.77 +0.4
33,045 + Ac3H11_4871 0.77 -1.1
33,045 + Ac3H11_4871 0.77 +0.3
33,045 + Ac3H11_4871 0.77 +1.6
33,045 + Ac3H11_4871 0.77 -0.5
33,045 + Ac3H11_4871 0.77 +1.0
33,045 + Ac3H11_4871 0.77 -0.6
33,045 + Ac3H11_4871 0.77 -1.5
33,045 + Ac3H11_4871 0.77 +0.5
33,045 + Ac3H11_4871 0.77 -1.5
33,045 + Ac3H11_4871 0.77 +0.9
33,045 + Ac3H11_4871 0.77 -0.0
33,045 + Ac3H11_4871 0.77 +1.2
33,046 - Ac3H11_4871 0.77 -2.5
33,046 - Ac3H11_4871 0.77 +1.0
33,046 - Ac3H11_4871 0.77 -0.2
33,046 - Ac3H11_4871 0.77 -2.0
33,046 - Ac3H11_4871 0.77 +2.8
33,046 - Ac3H11_4871 0.77 +1.7
33,046 - Ac3H11_4871 0.77 -1.8
33,046 - Ac3H11_4871 0.77 +0.4
33,046 - Ac3H11_4871 0.77 +0.9
33,046 - Ac3H11_4871 0.77 +0.3
33,046 - Ac3H11_4871 0.77 -0.2
33,046 - Ac3H11_4871 0.77 -2.0
33,046 - Ac3H11_4871 0.77 +0.1
33,046 - Ac3H11_4871 0.77 +0.8
33,046 - Ac3H11_4871 0.77 -0.6
33,046 - Ac3H11_4871 0.77 -0.3
33,046 - Ac3H11_4871 0.77 -0.9
33,046 - Ac3H11_4871 0.77 +0.1
33,046 - Ac3H11_4871 0.77 +0.7
33,046 - Ac3H11_4871 0.77 -0.7
33,046 - Ac3H11_4871 0.77 -1.9
33,046 - Ac3H11_4871 0.77 -1.1
33,046 - Ac3H11_4871 0.77 +0.9
33,046 - Ac3H11_4871 0.77 +0.7
33,046 - Ac3H11_4871 0.77 -1.8
33,049 + Ac3H11_4871 0.77 +0.7
33,049 + Ac3H11_4871 0.77 -0.4
33,049 + Ac3H11_4871 0.77 -0.5
33,049 + Ac3H11_4871 0.77 -1.8
33,049 + +1.9
33,050 - Ac3H11_4871 0.77 -1.3
33,050 - Ac3H11_4871 0.77 +0.2
33,050 - Ac3H11_4871 0.77 +0.2
33,050 - Ac3H11_4871 0.77 -2.6
33,050 - Ac3H11_4871 0.77 -0.2
33,050 - Ac3H11_4871 0.77 -0.3
33,050 - Ac3H11_4871 0.77 +0.3
33,050 - Ac3H11_4871 0.77 +0.3
33,050 - Ac3H11_4871 0.77 +0.2
33,050 - Ac3H11_4871 0.77 +0.1
33,076 + Ac3H11_4871 0.79 -0.4
33,076 + Ac3H11_4871 0.79 +0.3
33,076 + Ac3H11_4871 0.79 -0.5
33,077 - Ac3H11_4871 0.79 +0.3
33,077 - Ac3H11_4871 0.79 +0.2
33,094 + Ac3H11_4871 0.80 +1.2
33,094 + Ac3H11_4871 0.80 -1.5
33,095 - Ac3H11_4871 0.80 -1.2
33,095 - Ac3H11_4871 0.80 +0.5
33,167 - Ac3H11_4871 0.84 +0.3
33,167 - Ac3H11_4871 0.84 +0.4
33,224 + Ac3H11_4871 0.88 +1.7
33,224 + Ac3H11_4871 0.88 -0.7
33,224 + Ac3H11_4871 0.88 -0.7
33,224 + Ac3H11_4871 0.88 -0.4
33,224 + Ac3H11_4871 0.88 +1.1
33,225 - Ac3H11_4871 0.88 +0.6
33,225 - Ac3H11_4871 0.88 -0.9
33,225 - Ac3H11_4871 0.88 +0.7
33,319 - -0.8
33,422 + +0.3
33,422 + +0.7
33,422 + +1.0
33,423 - +0.2
33,423 - -0.6
33,423 - -0.0
33,879 + Ac3H11_4872 0.53 +0.3
33,879 + Ac3H11_4872 0.53 -0.5
33,880 - Ac3H11_4872 0.53 +0.2
33,880 - Ac3H11_4872 0.53 -0.8
33,880 - Ac3H11_4872 0.53 -0.8
33,880 - Ac3H11_4872 0.53 +0.9
33,880 - Ac3H11_4872 0.53 +0.1
34,047 + Ac3H11_4872 0.80 +0.2
34,048 - Ac3H11_4872 0.81 -0.6
34,048 - Ac3H11_4872 0.81 -0.5
34,048 - Ac3H11_4872 0.81 -0.4
34,048 - Ac3H11_4872 0.81 -1.0
34,146 + -0.1
34,146 + +0.5
34,146 + +0.0
34,146 + +0.3
34,146 + -1.8
34,146 + +0.4
34,146 + -0.4
34,146 + -1.0
34,146 + -0.2
34,146 + -0.4
34,147 - +1.3
34,147 - -2.6
34,147 - +0.3
34,147 - +1.0
34,147 - -2.5
34,147 - -0.6
34,456 + -0.5
34,456 + +0.4
34,654 + Ac3H11_4874 0.25 +0.6
34,654 + Ac3H11_4874 0.25 -1.0
34,654 + Ac3H11_4874 0.25 +0.0
34,654 + Ac3H11_4874 0.25 +0.4
34,654 + Ac3H11_4874 0.25 -0.7
34,654 + Ac3H11_4874 0.25 -0.6
34,655 - Ac3H11_4874 0.25 +0.5
34,655 - Ac3H11_4874 0.25 -1.1
34,655 - Ac3H11_4874 0.25 -1.0
34,655 - Ac3H11_4874 0.25 -0.4
34,655 - Ac3H11_4874 0.25 -0.2
34,849 + Ac3H11_4874 0.45 +0.4
34,850 - Ac3H11_4874 0.45 -0.4
34,850 - Ac3H11_4874 0.45 -0.3
34,850 - Ac3H11_4874 0.45 -2.1
34,850 - Ac3H11_4874 0.45 +0.2
34,850 - Ac3H11_4874 0.45 +1.2
34,850 - Ac3H11_4874 0.45 -1.3
34,898 + Ac3H11_4874 0.50 +0.5
34,999 + Ac3H11_4874 0.61 -0.1
34,999 + Ac3H11_4874 0.61 -0.6

Or see this region's nucleotide sequence