Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4555

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4554 and Ac3H11_4555 are separated by 89 nucleotidesAc3H11_4555 and Ac3H11_4556 overlap by 4 nucleotides Ac3H11_4554 - Permease of the drug/metabolite transporter (DMT) superfamily, at 145,263 to 146,201 _4554 Ac3H11_4555 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 146,291 to 146,695 _4555 Ac3H11_4556 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 146,692 to 148,353 _4556 Position (kb) 146 147Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 145.335 kb on + strandat 145.335 kb on + strandat 145.335 kb on + strandat 145.335 kb on + strandat 145.335 kb on + strandat 145.336 kb on - strandat 145.336 kb on - strandat 145.336 kb on - strandat 145.336 kb on - strandat 145.336 kb on - strandat 145.336 kb on - strandat 145.356 kb on + strandat 145.357 kb on - strand, within Ac3H11_4554at 145.786 kb on - strand, within Ac3H11_4554at 145.786 kb on - strand, within Ac3H11_4554at 145.786 kb on - strand, within Ac3H11_4554at 145.786 kb on - strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.938 kb on + strand, within Ac3H11_4554at 145.939 kb on - strand, within Ac3H11_4554at 145.939 kb on - strand, within Ac3H11_4554at 145.939 kb on - strand, within Ac3H11_4554at 145.978 kb on - strand, within Ac3H11_4554at 145.978 kb on - strand, within Ac3H11_4554at 145.978 kb on - strand, within Ac3H11_4554at 146.022 kb on + strand, within Ac3H11_4554at 146.022 kb on + strand, within Ac3H11_4554at 146.023 kb on - strand, within Ac3H11_4554at 146.023 kb on - strand, within Ac3H11_4554at 146.142 kb on + strandat 146.181 kb on + strandat 146.199 kb on + strandat 146.199 kb on + strandat 146.199 kb on + strandat 146.203 kb on - strandat 146.203 kb on - strandat 147.017 kb on + strand, within Ac3H11_4556at 147.056 kb on + strand, within Ac3H11_4556at 147.057 kb on - strand, within Ac3H11_4556at 147.066 kb on - strand, within Ac3H11_4556at 147.102 kb on - strand, within Ac3H11_4556at 147.122 kb on + strand, within Ac3H11_4556at 147.122 kb on + strand, within Ac3H11_4556at 147.122 kb on + strand, within Ac3H11_4556at 147.122 kb on + strand, within Ac3H11_4556at 147.122 kb on + strand, within Ac3H11_4556at 147.122 kb on + strand, within Ac3H11_4556at 147.123 kb on - strand, within Ac3H11_4556at 147.123 kb on - strand, within Ac3H11_4556at 147.123 kb on - strand, within Ac3H11_4556at 147.123 kb on - strand, within Ac3H11_4556at 147.123 kb on - strand, within Ac3H11_4556at 147.123 kb on - strand, within Ac3H11_4556at 147.150 kb on - strand, within Ac3H11_4556at 147.462 kb on - strand, within Ac3H11_4556at 147.479 kb on + strand, within Ac3H11_4556at 147.480 kb on - strand, within Ac3H11_4556at 147.480 kb on - strand, within Ac3H11_4556at 147.533 kb on + strand, within Ac3H11_4556at 147.533 kb on + strand, within Ac3H11_4556at 147.552 kb on - strand, within Ac3H11_4556at 147.658 kb on + strand, within Ac3H11_4556at 147.658 kb on + strand, within Ac3H11_4556at 147.658 kb on + strand, within Ac3H11_4556at 147.658 kb on + strand, within Ac3H11_4556at 147.659 kb on - strand, within Ac3H11_4556at 147.659 kb on - strand, within Ac3H11_4556at 147.659 kb on - strand, within Ac3H11_4556at 147.659 kb on - strand, within Ac3H11_4556at 147.659 kb on - strand, within Ac3H11_4556at 147.659 kb on - strand, within Ac3H11_4556

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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145,335 + +0.0
145,335 + -0.4
145,335 + -1.7
145,335 + +0.6
145,335 + -0.4
145,336 - -0.2
145,336 - +0.1
145,336 - +0.6
145,336 - +0.5
145,336 - +0.5
145,336 - +0.2
145,356 + +0.4
145,357 - Ac3H11_4554 0.10 -0.3
145,786 - Ac3H11_4554 0.56 +0.2
145,786 - Ac3H11_4554 0.56 -4.0
145,786 - Ac3H11_4554 0.56 +1.8
145,786 - Ac3H11_4554 0.56 -0.6
145,938 + Ac3H11_4554 0.72 -0.6
145,938 + Ac3H11_4554 0.72 -1.3
145,938 + Ac3H11_4554 0.72 -1.2
145,938 + Ac3H11_4554 0.72 -0.0
145,938 + Ac3H11_4554 0.72 +1.2
145,938 + Ac3H11_4554 0.72 -0.4
145,938 + Ac3H11_4554 0.72 -1.0
145,939 - Ac3H11_4554 0.72 +0.6
145,939 - Ac3H11_4554 0.72 -1.6
145,939 - Ac3H11_4554 0.72 -0.9
145,978 - Ac3H11_4554 0.76 -0.8
145,978 - Ac3H11_4554 0.76 +0.8
145,978 - Ac3H11_4554 0.76 +0.1
146,022 + Ac3H11_4554 0.81 +0.3
146,022 + Ac3H11_4554 0.81 -0.5
146,023 - Ac3H11_4554 0.81 +0.4
146,023 - Ac3H11_4554 0.81 +0.2
146,142 + -0.1
146,181 + -2.1
146,199 + +2.2
146,199 + -2.4
146,199 + -0.9
146,203 - -0.6
146,203 - -0.5
147,017 + Ac3H11_4556 0.20 +0.1
147,056 + Ac3H11_4556 0.22 +0.3
147,057 - Ac3H11_4556 0.22 +0.0
147,066 - Ac3H11_4556 0.23 -0.2
147,102 - Ac3H11_4556 0.25 -0.3
147,122 + Ac3H11_4556 0.26 +1.1
147,122 + Ac3H11_4556 0.26 -1.1
147,122 + Ac3H11_4556 0.26 -0.6
147,122 + Ac3H11_4556 0.26 +0.4
147,122 + Ac3H11_4556 0.26 -1.6
147,122 + Ac3H11_4556 0.26 +0.2
147,123 - Ac3H11_4556 0.26 -0.1
147,123 - Ac3H11_4556 0.26 -0.2
147,123 - Ac3H11_4556 0.26 -0.5
147,123 - Ac3H11_4556 0.26 -0.3
147,123 - Ac3H11_4556 0.26 +0.4
147,123 - Ac3H11_4556 0.26 -0.0
147,150 - Ac3H11_4556 0.28 -0.7
147,462 - Ac3H11_4556 0.46 -1.0
147,479 + Ac3H11_4556 0.47 -0.3
147,480 - Ac3H11_4556 0.47 -0.6
147,480 - Ac3H11_4556 0.47 +1.4
147,533 + Ac3H11_4556 0.51 -0.9
147,533 + Ac3H11_4556 0.51 +0.9
147,552 - Ac3H11_4556 0.52 -0.6
147,658 + Ac3H11_4556 0.58 +1.7
147,658 + Ac3H11_4556 0.58 +0.3
147,658 + Ac3H11_4556 0.58 +1.3
147,658 + Ac3H11_4556 0.58 +0.6
147,659 - Ac3H11_4556 0.58 -1.4
147,659 - Ac3H11_4556 0.58 -1.6
147,659 - Ac3H11_4556 0.58 -1.4
147,659 - Ac3H11_4556 0.58 +0.4
147,659 - Ac3H11_4556 0.58 -0.3
147,659 - Ac3H11_4556 0.58 -1.0

Or see this region's nucleotide sequence