Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4237

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4236 and Ac3H11_4237 are separated by 141 nucleotidesAc3H11_4237 and Ac3H11_4238 are separated by 13 nucleotides Ac3H11_4236 - Homoserine dehydrogenase (EC 1.1.1.3), at 7,551 to 8,942 _4236 Ac3H11_4237 - hypothetical protein, at 9,084 to 9,209 _4237 Ac3H11_4238 - peptidase M48, Ste24p, at 9,223 to 9,912 _4238 Position (kb) 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 8.320 kb on + strand, within Ac3H11_4236at 8.500 kb on + strand, within Ac3H11_4236at 8.501 kb on - strand, within Ac3H11_4236at 8.501 kb on - strand, within Ac3H11_4236at 8.501 kb on - strand, within Ac3H11_4236at 8.501 kb on - strand, within Ac3H11_4236at 8.501 kb on - strand, within Ac3H11_4236at 8.501 kb on - strand, within Ac3H11_4236at 8.939 kb on - strandat 8.939 kb on - strandat 9.091 kb on + strandat 9.092 kb on - strandat 9.092 kb on - strandat 9.186 kb on + strand, within Ac3H11_4237at 9.186 kb on + strand, within Ac3H11_4237at 9.187 kb on - strand, within Ac3H11_4237at 9.187 kb on - strand, within Ac3H11_4237at 9.187 kb on - strand, within Ac3H11_4237at 9.187 kb on - strand, within Ac3H11_4237at 9.187 kb on - strand, within Ac3H11_4237at 9.207 kb on + strandat 9.207 kb on + strandat 9.208 kb on - strandat 9.208 kb on - strandat 9.297 kb on + strand, within Ac3H11_4238at 9.297 kb on + strand, within Ac3H11_4238at 9.297 kb on + strand, within Ac3H11_4238at 9.354 kb on - strand, within Ac3H11_4238at 9.383 kb on + strand, within Ac3H11_4238at 9.383 kb on + strand, within Ac3H11_4238at 9.383 kb on + strand, within Ac3H11_4238at 9.384 kb on - strand, within Ac3H11_4238at 9.384 kb on - strand, within Ac3H11_4238at 9.384 kb on - strand, within Ac3H11_4238at 9.384 kb on - strand, within Ac3H11_4238at 9.384 kb on - strand, within Ac3H11_4238at 9.384 kb on - strand, within Ac3H11_4238at 9.590 kb on + strand, within Ac3H11_4238at 9.590 kb on + strand, within Ac3H11_4238at 9.590 kb on + strand, within Ac3H11_4238at 9.590 kb on + strand, within Ac3H11_4238at 9.591 kb on - strand, within Ac3H11_4238at 9.591 kb on - strand, within Ac3H11_4238at 9.591 kb on - strand, within Ac3H11_4238at 9.632 kb on + strand, within Ac3H11_4238at 9.633 kb on - strand, within Ac3H11_4238at 9.686 kb on + strand, within Ac3H11_4238at 9.686 kb on + strand, within Ac3H11_4238at 9.686 kb on + strand, within Ac3H11_4238at 9.686 kb on + strand, within Ac3H11_4238at 9.686 kb on + strand, within Ac3H11_4238at 9.686 kb on + strand, within Ac3H11_4238at 9.687 kb on - strand, within Ac3H11_4238at 9.687 kb on - strand, within Ac3H11_4238at 9.687 kb on - strand, within Ac3H11_4238at 9.687 kb on - strand, within Ac3H11_4238at 9.687 kb on - strand, within Ac3H11_4238at 9.716 kb on + strand, within Ac3H11_4238at 9.716 kb on + strand, within Ac3H11_4238at 9.717 kb on - strand, within Ac3H11_4238at 9.717 kb on - strand, within Ac3H11_4238at 9.717 kb on - strand, within Ac3H11_4238at 9.717 kb on - strand, within Ac3H11_4238at 9.758 kb on + strand, within Ac3H11_4238at 9.759 kb on - strand, within Ac3H11_4238at 9.759 kb on - strand, within Ac3H11_4238at 9.759 kb on - strand, within Ac3H11_4238at 9.759 kb on - strand, within Ac3H11_4238at 9.759 kb on - strand, within Ac3H11_4238at 9.821 kb on + strand, within Ac3H11_4238at 9.821 kb on + strand, within Ac3H11_4238at 9.821 kb on + strand, within Ac3H11_4238at 9.821 kb on + strand, within Ac3H11_4238at 9.821 kb on + strand, within Ac3H11_4238at 9.821 kb on + strand, within Ac3H11_4238at 9.822 kb on - strand, within Ac3H11_4238at 9.822 kb on - strand, within Ac3H11_4238at 9.822 kb on - strand, within Ac3H11_4238at 9.822 kb on - strand, within Ac3H11_4238at 9.822 kb on - strand, within Ac3H11_4238at 9.822 kb on - strand, within Ac3H11_4238at 9.979 kb on + strandat 9.979 kb on + strandat 9.980 kb on - strandat 10.004 kb on + strandat 10.004 kb on + strandat 10.005 kb on - strandat 10.005 kb on - strandat 10.005 kb on - strandat 10.005 kb on - strandat 10.005 kb on - strandat 10.005 kb on - strandat 10.018 kb on + strandat 10.038 kb on + strandat 10.042 kb on + strandat 10.043 kb on - strandat 10.043 kb on - strandat 10.084 kb on - strandat 10.150 kb on + strandat 10.150 kb on + strandat 10.198 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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8,320 + Ac3H11_4236 0.55 -1.0
8,500 + Ac3H11_4236 0.68 +0.3
8,501 - Ac3H11_4236 0.68 +1.3
8,501 - Ac3H11_4236 0.68 +0.8
8,501 - Ac3H11_4236 0.68 +0.0
8,501 - Ac3H11_4236 0.68 -0.4
8,501 - Ac3H11_4236 0.68 +0.7
8,501 - Ac3H11_4236 0.68 +0.3
8,939 - +1.4
8,939 - +0.3
9,091 + +0.1
9,092 - +0.6
9,092 - +0.3
9,186 + Ac3H11_4237 0.81 -1.3
9,186 + Ac3H11_4237 0.81 +0.4
9,187 - Ac3H11_4237 0.82 +0.4
9,187 - Ac3H11_4237 0.82 +0.2
9,187 - Ac3H11_4237 0.82 -1.0
9,187 - Ac3H11_4237 0.82 -0.8
9,187 - Ac3H11_4237 0.82 +1.1
9,207 + -1.1
9,207 + +0.7
9,208 - -3.4
9,208 - -0.0
9,297 + Ac3H11_4238 0.11 +0.9
9,297 + Ac3H11_4238 0.11 +1.3
9,297 + Ac3H11_4238 0.11 -1.4
9,354 - Ac3H11_4238 0.19 -0.1
9,383 + Ac3H11_4238 0.23 -1.1
9,383 + Ac3H11_4238 0.23 +0.6
9,383 + Ac3H11_4238 0.23 +0.3
9,384 - Ac3H11_4238 0.23 +0.8
9,384 - Ac3H11_4238 0.23 +0.9
9,384 - Ac3H11_4238 0.23 +0.2
9,384 - Ac3H11_4238 0.23 +0.5
9,384 - Ac3H11_4238 0.23 -0.3
9,384 - Ac3H11_4238 0.23 +0.0
9,590 + Ac3H11_4238 0.53 +1.4
9,590 + Ac3H11_4238 0.53 -1.7
9,590 + Ac3H11_4238 0.53 +0.7
9,590 + Ac3H11_4238 0.53 +0.1
9,591 - Ac3H11_4238 0.53 -0.9
9,591 - Ac3H11_4238 0.53 -0.8
9,591 - Ac3H11_4238 0.53 +3.6
9,632 + Ac3H11_4238 0.59 -0.1
9,633 - Ac3H11_4238 0.59 -0.7
9,686 + Ac3H11_4238 0.67 +0.9
9,686 + Ac3H11_4238 0.67 +0.6
9,686 + Ac3H11_4238 0.67 +1.5
9,686 + Ac3H11_4238 0.67 +2.1
9,686 + Ac3H11_4238 0.67 -0.6
9,686 + Ac3H11_4238 0.67 +0.5
9,687 - Ac3H11_4238 0.67 +0.8
9,687 - Ac3H11_4238 0.67 -1.8
9,687 - Ac3H11_4238 0.67 -0.4
9,687 - Ac3H11_4238 0.67 -0.3
9,687 - Ac3H11_4238 0.67 -0.1
9,716 + Ac3H11_4238 0.71 -0.5
9,716 + Ac3H11_4238 0.71 -1.5
9,717 - Ac3H11_4238 0.72 -0.2
9,717 - Ac3H11_4238 0.72 +0.1
9,717 - Ac3H11_4238 0.72 +1.4
9,717 - Ac3H11_4238 0.72 +0.9
9,758 + Ac3H11_4238 0.78 -0.1
9,759 - Ac3H11_4238 0.78 -1.1
9,759 - Ac3H11_4238 0.78 -0.0
9,759 - Ac3H11_4238 0.78 -0.1
9,759 - Ac3H11_4238 0.78 +0.3
9,759 - Ac3H11_4238 0.78 +0.9
9,821 + Ac3H11_4238 0.87 +1.3
9,821 + Ac3H11_4238 0.87 -3.6
9,821 + Ac3H11_4238 0.87 -2.0
9,821 + Ac3H11_4238 0.87 +0.8
9,821 + Ac3H11_4238 0.87 +0.9
9,821 + Ac3H11_4238 0.87 -0.4
9,822 - Ac3H11_4238 0.87 +0.5
9,822 - Ac3H11_4238 0.87 -1.3
9,822 - Ac3H11_4238 0.87 +0.5
9,822 - Ac3H11_4238 0.87 -1.5
9,822 - Ac3H11_4238 0.87 -2.5
9,822 - Ac3H11_4238 0.87 +0.2
9,979 + +1.6
9,979 + +0.9
9,980 - +0.1
10,004 + -3.1
10,004 + -0.4
10,005 - +0.3
10,005 - -2.5
10,005 - -0.7
10,005 - -0.2
10,005 - +0.2
10,005 - -0.6
10,018 + -0.3
10,038 + -0.7
10,042 + -1.1
10,043 - +0.4
10,043 - +0.3
10,084 - +1.7
10,150 + +0.2
10,150 + -0.1
10,198 + -0.4

Or see this region's nucleotide sequence