Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3951

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3950 and Ac3H11_3951 are separated by 77 nucleotidesAc3H11_3951 and Ac3H11_3952 are separated by 9 nucleotides Ac3H11_3950 - Catalase (EC 1.11.1.6), at 173,778 to 174,767 _3950 Ac3H11_3951 - Aldose 1-epimerase (EC 5.1.3.3), at 174,845 to 175,957 _3951 Ac3H11_3952 - Permease of the drug/metabolite transporter (DMT) superfamily, at 175,967 to 176,896 _3952 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.965 kb on + strand, within Ac3H11_3950at 173.965 kb on + strand, within Ac3H11_3950at 173.966 kb on - strand, within Ac3H11_3950at 174.529 kb on + strand, within Ac3H11_3950at 174.754 kb on + strandat 174.754 kb on + strandat 174.755 kb on - strandat 174.755 kb on - strandat 174.755 kb on - strandat 174.847 kb on - strandat 174.847 kb on - strandat 174.864 kb on + strandat 175.053 kb on + strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.200 kb on + strand, within Ac3H11_3951at 175.201 kb on - strand, within Ac3H11_3951at 175.201 kb on - strand, within Ac3H11_3951at 175.347 kb on + strand, within Ac3H11_3951at 175.348 kb on - strand, within Ac3H11_3951at 175.362 kb on - strand, within Ac3H11_3951at 175.456 kb on + strand, within Ac3H11_3951at 175.761 kb on + strand, within Ac3H11_3951at 175.779 kb on + strand, within Ac3H11_3951at 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.892 kb on - strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.951 kb on - strandat 175.951 kb on - strandat 175.951 kb on - strandat 176.196 kb on + strand, within Ac3H11_3952at 176.197 kb on - strand, within Ac3H11_3952at 176.344 kb on - strand, within Ac3H11_3952at 176.509 kb on - strand, within Ac3H11_3952at 176.509 kb on - strand, within Ac3H11_3952at 176.581 kb on + strand, within Ac3H11_3952at 176.582 kb on - strand, within Ac3H11_3952at 176.584 kb on - strand, within Ac3H11_3952at 176.598 kb on + strand, within Ac3H11_3952at 176.598 kb on + strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.620 kb on + strand, within Ac3H11_3952at 176.621 kb on - strand, within Ac3H11_3952at 176.621 kb on - strand, within Ac3H11_3952at 176.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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173,965 + Ac3H11_3950 0.19 +2.7
173,965 + Ac3H11_3950 0.19 +0.9
173,966 - Ac3H11_3950 0.19 +0.8
174,529 + Ac3H11_3950 0.76 -1.8
174,754 + -0.8
174,754 + -0.2
174,755 - +0.8
174,755 - +0.5
174,755 - +1.1
174,847 - -0.3
174,847 - +1.1
174,864 + +0.2
175,053 + Ac3H11_3951 0.19 +1.7
175,054 - Ac3H11_3951 0.19 +1.7
175,054 - Ac3H11_3951 0.19 +1.3
175,054 - Ac3H11_3951 0.19 +0.0
175,054 - Ac3H11_3951 0.19 -0.9
175,200 + Ac3H11_3951 0.32 -0.6
175,201 - Ac3H11_3951 0.32 -1.1
175,201 - Ac3H11_3951 0.32 -0.3
175,347 + Ac3H11_3951 0.45 -1.2
175,348 - Ac3H11_3951 0.45 +1.5
175,362 - Ac3H11_3951 0.46 +1.2
175,456 + Ac3H11_3951 0.55 +0.9
175,761 + Ac3H11_3951 0.82 -0.9
175,779 + Ac3H11_3951 0.84 -0.5
175,848 + -1.9
175,848 + +1.8
175,848 + -0.9
175,848 + +0.1
175,848 + -0.3
175,848 + -1.2
175,848 + -0.4
175,848 + -3.0
175,848 + -0.1
175,848 + -0.4
175,849 - -0.4
175,849 - +0.2
175,849 - -0.9
175,849 - -0.8
175,849 - -1.1
175,892 - +1.0
175,950 + -0.6
175,950 + -2.2
175,950 + -0.4
175,950 + -0.0
175,950 + -0.1
175,950 + -0.5
175,950 + -1.1
175,951 - +1.8
175,951 - -1.7
175,951 - +0.8
176,196 + Ac3H11_3952 0.25 -0.8
176,197 - Ac3H11_3952 0.25 +1.5
176,344 - Ac3H11_3952 0.41 -1.7
176,509 - Ac3H11_3952 0.58 -0.3
176,509 - Ac3H11_3952 0.58 -0.5
176,581 + Ac3H11_3952 0.66 -0.4
176,582 - Ac3H11_3952 0.66 -2.6
176,584 - Ac3H11_3952 0.66 -0.7
176,598 + Ac3H11_3952 0.68 -3.0
176,598 + Ac3H11_3952 0.68 -1.3
176,599 - Ac3H11_3952 0.68 -0.5
176,599 - Ac3H11_3952 0.68 +0.1
176,599 - Ac3H11_3952 0.68 -0.7
176,599 - Ac3H11_3952 0.68 +0.7
176,611 - Ac3H11_3952 0.69 +0.9
176,611 - Ac3H11_3952 0.69 -1.2
176,611 - Ac3H11_3952 0.69 +0.4
176,611 - Ac3H11_3952 0.69 -1.2
176,611 - Ac3H11_3952 0.69 +1.1
176,620 + Ac3H11_3952 0.70 +0.7
176,621 - Ac3H11_3952 0.70 +1.0
176,621 - Ac3H11_3952 0.70 -0.9
176,944 - -2.3

Or see this region's nucleotide sequence