Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3815

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3814 and Ac3H11_3815 are separated by 109 nucleotidesAc3H11_3815 and Ac3H11_3816 are separated by 118 nucleotides Ac3H11_3814 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 29,129 to 30,220 _3814 Ac3H11_3815 - putative membrane protein, at 30,330 to 30,911 _3815 Ac3H11_3816 - Patatin, at 31,030 to 32,322 _3816 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 30.227 kb on - strandat 30.227 kb on - strandat 30.245 kb on - strandat 30.249 kb on + strandat 30.250 kb on - strandat 30.250 kb on - strandat 30.250 kb on - strandat 30.450 kb on + strand, within Ac3H11_3815at 30.451 kb on - strand, within Ac3H11_3815at 30.451 kb on - strand, within Ac3H11_3815at 30.451 kb on - strand, within Ac3H11_3815at 30.451 kb on - strand, within Ac3H11_3815at 30.628 kb on - strand, within Ac3H11_3815at 30.628 kb on - strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.801 kb on + strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.802 kb on - strand, within Ac3H11_3815at 30.843 kb on + strand, within Ac3H11_3815at 30.843 kb on + strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 30.844 kb on - strand, within Ac3H11_3815at 31.212 kb on + strand, within Ac3H11_3816at 31.212 kb on + strand, within Ac3H11_3816at 31.213 kb on - strand, within Ac3H11_3816at 31.213 kb on - strand, within Ac3H11_3816at 31.330 kb on + strand, within Ac3H11_3816at 31.331 kb on - strand, within Ac3H11_3816at 31.331 kb on - strand, within Ac3H11_3816at 31.549 kb on + strand, within Ac3H11_3816at 31.550 kb on - strand, within Ac3H11_3816at 31.550 kb on - strand, within Ac3H11_3816at 31.550 kb on - strand, within Ac3H11_3816at 31.861 kb on + strand, within Ac3H11_3816at 31.861 kb on + strand, within Ac3H11_3816

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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30,227 - +0.2
30,227 - -0.1
30,245 - -1.5
30,249 + +0.8
30,250 - -2.4
30,250 - -0.2
30,250 - -0.5
30,450 + Ac3H11_3815 0.21 +0.3
30,451 - Ac3H11_3815 0.21 -0.7
30,451 - Ac3H11_3815 0.21 -1.8
30,451 - Ac3H11_3815 0.21 -1.7
30,451 - Ac3H11_3815 0.21 -2.0
30,628 - Ac3H11_3815 0.51 -0.7
30,628 - Ac3H11_3815 0.51 +0.3
30,801 + Ac3H11_3815 0.81 -1.0
30,801 + Ac3H11_3815 0.81 +1.8
30,801 + Ac3H11_3815 0.81 -0.5
30,801 + Ac3H11_3815 0.81 +0.8
30,801 + Ac3H11_3815 0.81 -0.2
30,801 + Ac3H11_3815 0.81 -1.7
30,801 + Ac3H11_3815 0.81 -1.1
30,801 + Ac3H11_3815 0.81 -0.8
30,801 + Ac3H11_3815 0.81 -0.3
30,801 + Ac3H11_3815 0.81 -0.1
30,801 + Ac3H11_3815 0.81 -0.1
30,802 - Ac3H11_3815 0.81 -0.0
30,802 - Ac3H11_3815 0.81 +0.7
30,802 - Ac3H11_3815 0.81 -0.3
30,802 - Ac3H11_3815 0.81 -0.9
30,802 - Ac3H11_3815 0.81 -0.9
30,802 - Ac3H11_3815 0.81 -0.7
30,802 - Ac3H11_3815 0.81 +0.5
30,802 - Ac3H11_3815 0.81 -1.2
30,802 - Ac3H11_3815 0.81 -0.3
30,802 - Ac3H11_3815 0.81 +1.0
30,843 + Ac3H11_3815 0.88 -2.2
30,843 + Ac3H11_3815 0.88 +0.9
30,844 - Ac3H11_3815 0.88 -1.3
30,844 - Ac3H11_3815 0.88 -2.4
30,844 - Ac3H11_3815 0.88 -0.2
30,844 - Ac3H11_3815 0.88 +0.0
30,844 - Ac3H11_3815 0.88 +0.3
30,844 - Ac3H11_3815 0.88 -0.2
30,844 - Ac3H11_3815 0.88 -1.1
31,212 + Ac3H11_3816 0.14 +0.7
31,212 + Ac3H11_3816 0.14 -0.0
31,213 - Ac3H11_3816 0.14 +0.1
31,213 - Ac3H11_3816 0.14 -0.4
31,330 + Ac3H11_3816 0.23 -2.3
31,331 - Ac3H11_3816 0.23 +0.1
31,331 - Ac3H11_3816 0.23 -2.0
31,549 + Ac3H11_3816 0.40 -1.2
31,550 - Ac3H11_3816 0.40 +0.3
31,550 - Ac3H11_3816 0.40 -1.2
31,550 - Ac3H11_3816 0.40 +0.5
31,861 + Ac3H11_3816 0.64 -0.1
31,861 + Ac3H11_3816 0.64 -0.6

Or see this region's nucleotide sequence