Experiment: Bacitracin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3729 and Ac3H11_3730 are separated by 23 nucleotides Ac3H11_3730 and Ac3H11_3731 are separated by 25 nucleotides Ac3H11_3731 and Ac3H11_3732 are separated by 190 nucleotides
Ac3H11_3729 - Cytosine deaminase (EC 3.5.4.1), at 88,802 to 90,130
_3729
Ac3H11_3730 - Glutathione-regulated potassium-efflux system ancillary protein KefG, at 90,154 to 90,741
_3730
Ac3H11_3731 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 90,767 to 91,069
_3731
Ac3H11_3732 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 91,260 to 91,934
_3732
Position (kb)
90
91 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 89.169 kb on - strand, within Ac3H11_3729 at 89.169 kb on - strand, within Ac3H11_3729 at 90.155 kb on + strand at 90.156 kb on - strand at 90.156 kb on - strand at 90.156 kb on - strand at 90.156 kb on - strand at 90.156 kb on - strand at 90.233 kb on + strand, within Ac3H11_3730 at 90.233 kb on + strand, within Ac3H11_3730 at 90.234 kb on - strand, within Ac3H11_3730 at 90.237 kb on - strand, within Ac3H11_3730 at 90.237 kb on - strand, within Ac3H11_3730 at 90.245 kb on + strand, within Ac3H11_3730 at 90.285 kb on - strand, within Ac3H11_3730 at 90.285 kb on - strand, within Ac3H11_3730 at 90.285 kb on - strand, within Ac3H11_3730 at 90.348 kb on - strand, within Ac3H11_3730 at 90.348 kb on - strand, within Ac3H11_3730 at 90.348 kb on - strand, within Ac3H11_3730 at 90.536 kb on + strand, within Ac3H11_3730 at 90.537 kb on - strand, within Ac3H11_3730 at 90.623 kb on + strand, within Ac3H11_3730 at 90.699 kb on - strand at 90.710 kb on - strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.723 kb on - strand at 90.723 kb on - strand at 91.226 kb on + strand at 91.262 kb on - strand at 91.378 kb on + strand, within Ac3H11_3732 at 91.387 kb on + strand, within Ac3H11_3732 at 91.388 kb on - strand, within Ac3H11_3732 at 91.516 kb on + strand, within Ac3H11_3732 at 91.516 kb on + strand, within Ac3H11_3732 at 91.517 kb on - strand, within Ac3H11_3732 at 91.517 kb on - strand, within Ac3H11_3732 at 91.591 kb on + strand, within Ac3H11_3732 at 91.591 kb on + strand, within Ac3H11_3732 at 91.612 kb on + strand, within Ac3H11_3732 at 91.612 kb on + strand, within Ac3H11_3732 at 91.613 kb on - strand, within Ac3H11_3732 at 91.613 kb on - strand, within Ac3H11_3732 at 91.624 kb on - strand, within Ac3H11_3732 at 91.691 kb on - strand, within Ac3H11_3732 at 91.691 kb on - strand, within Ac3H11_3732 at 91.705 kb on + strand, within Ac3H11_3732 at 91.705 kb on + strand, within Ac3H11_3732 at 91.706 kb on - strand, within Ac3H11_3732 at 91.706 kb on - strand, within Ac3H11_3732 at 91.706 kb on - strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.729 kb on + strand, within Ac3H11_3732 at 91.730 kb on - strand, within Ac3H11_3732 at 91.730 kb on - strand, within Ac3H11_3732 at 91.730 kb on - strand, within Ac3H11_3732 at 91.730 kb on - strand, within Ac3H11_3732 at 91.730 kb on - strand, within Ac3H11_3732 at 91.730 kb on - strand, within Ac3H11_3732 at 91.733 kb on - strand, within Ac3H11_3732 at 91.733 kb on - strand, within Ac3H11_3732
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml remove 89,169 - Ac3H11_3729 0.28 -1.8 89,169 - Ac3H11_3729 0.28 -0.7 90,155 + -1.2 90,156 - -2.9 90,156 - +0.9 90,156 - -1.1 90,156 - -0.6 90,156 - +0.1 90,233 + Ac3H11_3730 0.13 -0.3 90,233 + Ac3H11_3730 0.13 -1.2 90,234 - Ac3H11_3730 0.14 +2.5 90,237 - Ac3H11_3730 0.14 -1.4 90,237 - Ac3H11_3730 0.14 +0.9 90,245 + Ac3H11_3730 0.15 +0.2 90,285 - Ac3H11_3730 0.22 -0.6 90,285 - Ac3H11_3730 0.22 -0.4 90,285 - Ac3H11_3730 0.22 +0.9 90,348 - Ac3H11_3730 0.33 +1.8 90,348 - Ac3H11_3730 0.33 -0.1 90,348 - Ac3H11_3730 0.33 -2.4 90,536 + Ac3H11_3730 0.65 +1.3 90,537 - Ac3H11_3730 0.65 -0.7 90,623 + Ac3H11_3730 0.80 +0.3 90,699 - +0.4 90,710 - +0.6 90,722 + -1.1 90,722 + -0.7 90,722 + -0.2 90,723 - -0.2 90,723 - +0.1 91,226 + +0.1 91,262 - -1.4 91,378 + Ac3H11_3732 0.17 +1.3 91,387 + Ac3H11_3732 0.19 +1.2 91,388 - Ac3H11_3732 0.19 -3.3 91,516 + Ac3H11_3732 0.38 -1.2 91,516 + Ac3H11_3732 0.38 -1.2 91,517 - Ac3H11_3732 0.38 +0.3 91,517 - Ac3H11_3732 0.38 -0.2 91,591 + Ac3H11_3732 0.49 -0.6 91,591 + Ac3H11_3732 0.49 +1.6 91,612 + Ac3H11_3732 0.52 +0.8 91,612 + Ac3H11_3732 0.52 +0.3 91,613 - Ac3H11_3732 0.52 +0.8 91,613 - Ac3H11_3732 0.52 -0.6 91,624 - Ac3H11_3732 0.54 -0.9 91,691 - Ac3H11_3732 0.64 +0.2 91,691 - Ac3H11_3732 0.64 +1.4 91,705 + Ac3H11_3732 0.66 +0.4 91,705 + Ac3H11_3732 0.66 +1.8 91,706 - Ac3H11_3732 0.66 -0.3 91,706 - Ac3H11_3732 0.66 -2.0 91,706 - Ac3H11_3732 0.66 -0.6 91,729 + Ac3H11_3732 0.69 -0.6 91,729 + Ac3H11_3732 0.69 -0.1 91,729 + Ac3H11_3732 0.69 +2.2 91,729 + Ac3H11_3732 0.69 +0.1 91,729 + Ac3H11_3732 0.69 +1.0 91,729 + Ac3H11_3732 0.69 +0.6 91,729 + Ac3H11_3732 0.69 -0.1 91,729 + Ac3H11_3732 0.69 +0.9 91,729 + Ac3H11_3732 0.69 -1.1 91,729 + Ac3H11_3732 0.69 +0.2 91,729 + Ac3H11_3732 0.69 +0.3 91,730 - Ac3H11_3732 0.70 -0.6 91,730 - Ac3H11_3732 0.70 +0.3 91,730 - Ac3H11_3732 0.70 -0.7 91,730 - Ac3H11_3732 0.70 -2.3 91,730 - Ac3H11_3732 0.70 -1.1 91,730 - Ac3H11_3732 0.70 +0.6 91,733 - Ac3H11_3732 0.70 -2.5 91,733 - Ac3H11_3732 0.70 -0.2
Or see this region's nucleotide sequence