Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_302

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_301 and Ac3H11_302 are separated by 66 nucleotidesAc3H11_302 and Ac3H11_303 are separated by 77 nucleotides Ac3H11_301 - putative exported protein, at 122,674 to 123,636 _301 Ac3H11_302 - Tyrosine recombinase XerD, at 123,703 to 124,602 _302 Ac3H11_303 - Tricarboxylate transport protein TctC, at 124,680 to 125,645 _303 Position (kb) 123 124 125Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 122.770 kb on + strandat 122.770 kb on + strandat 122.770 kb on + strandat 122.770 kb on + strandat 122.771 kb on - strand, within Ac3H11_301at 122.771 kb on - strand, within Ac3H11_301at 122.771 kb on - strand, within Ac3H11_301at 122.862 kb on + strand, within Ac3H11_301at 122.862 kb on + strand, within Ac3H11_301at 122.863 kb on - strand, within Ac3H11_301at 122.863 kb on - strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.882 kb on - strand, within Ac3H11_301at 122.882 kb on - strand, within Ac3H11_301at 122.882 kb on - strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.270 kb on - strand, within Ac3H11_301at 123.270 kb on - strand, within Ac3H11_301at 123.296 kb on + strand, within Ac3H11_301at 123.296 kb on + strand, within Ac3H11_301at 123.296 kb on + strand, within Ac3H11_301at 123.297 kb on - strand, within Ac3H11_301at 123.297 kb on - strand, within Ac3H11_301at 123.321 kb on - strand, within Ac3H11_301at 123.321 kb on - strand, within Ac3H11_301at 123.321 kb on - strand, within Ac3H11_301at 123.341 kb on + strand, within Ac3H11_301at 123.341 kb on + strand, within Ac3H11_301at 123.342 kb on - strand, within Ac3H11_301at 123.386 kb on + strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.450 kb on - strand, within Ac3H11_301at 123.450 kb on - strand, within Ac3H11_301at 123.450 kb on - strand, within Ac3H11_301at 123.471 kb on + strand, within Ac3H11_301at 123.471 kb on + strand, within Ac3H11_301at 123.471 kb on + strand, within Ac3H11_301at 123.472 kb on - strand, within Ac3H11_301at 123.472 kb on - strand, within Ac3H11_301at 123.472 kb on - strand, within Ac3H11_301at 123.764 kb on + strandat 123.764 kb on + strandat 123.764 kb on + strandat 123.764 kb on + strandat 123.765 kb on - strandat 123.765 kb on - strandat 123.765 kb on - strandat 123.765 kb on - strandat 123.765 kb on - strandat 124.023 kb on - strand, within Ac3H11_302at 124.023 kb on - strand, within Ac3H11_302at 124.421 kb on + strand, within Ac3H11_302at 124.613 kb on + strandat 124.613 kb on + strandat 124.682 kb on - strandat 124.682 kb on - strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.721 kb on - strandat 124.721 kb on - strandat 124.721 kb on - strandat 124.897 kb on + strand, within Ac3H11_303at 124.897 kb on + strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.900 kb on + strand, within Ac3H11_303at 124.900 kb on + strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.188 kb on + strand, within Ac3H11_303at 125.188 kb on + strand, within Ac3H11_303at 125.189 kb on - strand, within Ac3H11_303at 125.189 kb on - strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.237 kb on + strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.326 kb on + strand, within Ac3H11_303at 125.326 kb on + strand, within Ac3H11_303at 125.326 kb on + strand, within Ac3H11_303at 125.327 kb on - strand, within Ac3H11_303at 125.327 kb on - strand, within Ac3H11_303

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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122,770 + -2.1
122,770 + +0.4
122,770 + +0.4
122,770 + +1.9
122,771 - Ac3H11_301 0.10 +1.4
122,771 - Ac3H11_301 0.10 +1.5
122,771 - Ac3H11_301 0.10 -0.5
122,862 + Ac3H11_301 0.20 +0.1
122,862 + Ac3H11_301 0.20 +0.8
122,863 - Ac3H11_301 0.20 -1.4
122,863 - Ac3H11_301 0.20 -1.5
122,881 + Ac3H11_301 0.21 -0.9
122,881 + Ac3H11_301 0.21 -0.2
122,881 + Ac3H11_301 0.21 +1.6
122,881 + Ac3H11_301 0.21 +0.7
122,882 - Ac3H11_301 0.22 -0.8
122,882 - Ac3H11_301 0.22 -0.6
122,882 - Ac3H11_301 0.22 -1.2
123,095 + Ac3H11_301 0.44 -0.4
123,095 + Ac3H11_301 0.44 -2.6
123,095 + Ac3H11_301 0.44 -1.1
123,095 + Ac3H11_301 0.44 -1.1
123,096 - Ac3H11_301 0.44 +0.3
123,096 - Ac3H11_301 0.44 -0.3
123,096 - Ac3H11_301 0.44 -1.0
123,096 - Ac3H11_301 0.44 -2.3
123,096 - Ac3H11_301 0.44 -0.4
123,096 - Ac3H11_301 0.44 -1.8
123,096 - Ac3H11_301 0.44 +0.5
123,269 + Ac3H11_301 0.62 +0.9
123,269 + Ac3H11_301 0.62 +0.4
123,269 + Ac3H11_301 0.62 +0.0
123,269 + Ac3H11_301 0.62 +0.8
123,269 + Ac3H11_301 0.62 +0.6
123,269 + Ac3H11_301 0.62 +0.4
123,269 + Ac3H11_301 0.62 +0.2
123,269 + Ac3H11_301 0.62 -0.2
123,269 + Ac3H11_301 0.62 +1.3
123,269 + Ac3H11_301 0.62 -0.1
123,270 - Ac3H11_301 0.62 -0.3
123,270 - Ac3H11_301 0.62 -1.8
123,296 + Ac3H11_301 0.65 +0.1
123,296 + Ac3H11_301 0.65 +0.1
123,296 + Ac3H11_301 0.65 +0.9
123,297 - Ac3H11_301 0.65 -0.8
123,297 - Ac3H11_301 0.65 +1.0
123,321 - Ac3H11_301 0.67 -0.1
123,321 - Ac3H11_301 0.67 +1.0
123,321 - Ac3H11_301 0.67 -0.7
123,341 + Ac3H11_301 0.69 +0.1
123,341 + Ac3H11_301 0.69 +0.7
123,342 - Ac3H11_301 0.69 -0.7
123,386 + Ac3H11_301 0.74 +0.3
123,387 - Ac3H11_301 0.74 +0.9
123,387 - Ac3H11_301 0.74 -1.6
123,387 - Ac3H11_301 0.74 +1.3
123,387 - Ac3H11_301 0.74 -2.4
123,449 + Ac3H11_301 0.80 +1.6
123,449 + Ac3H11_301 0.80 -0.9
123,449 + Ac3H11_301 0.80 +0.7
123,449 + Ac3H11_301 0.80 -0.3
123,449 + Ac3H11_301 0.80 +0.3
123,449 + Ac3H11_301 0.80 -0.2
123,449 + Ac3H11_301 0.80 +0.0
123,449 + Ac3H11_301 0.80 -0.5
123,449 + Ac3H11_301 0.80 +0.6
123,450 - Ac3H11_301 0.81 +0.6
123,450 - Ac3H11_301 0.81 -1.1
123,450 - Ac3H11_301 0.81 -0.6
123,471 + Ac3H11_301 0.83 -0.3
123,471 + Ac3H11_301 0.83 +1.1
123,471 + Ac3H11_301 0.83 -0.5
123,472 - Ac3H11_301 0.83 -0.7
123,472 - Ac3H11_301 0.83 -0.1
123,472 - Ac3H11_301 0.83 -0.6
123,764 + -1.3
123,764 + -1.6
123,764 + -1.8
123,764 + -0.3
123,765 - -0.3
123,765 - +0.1
123,765 - -2.0
123,765 - -0.6
123,765 - -0.9
124,023 - Ac3H11_302 0.36 -0.3
124,023 - Ac3H11_302 0.36 -0.6
124,421 + Ac3H11_302 0.80 +1.4
124,613 + +0.4
124,613 + -1.8
124,682 - +0.6
124,682 - +0.3
124,720 + -1.1
124,720 + -1.0
124,720 + -0.2
124,720 + +1.5
124,720 + +1.2
124,721 - -0.0
124,721 - +1.0
124,721 - +1.1
124,897 + Ac3H11_303 0.22 -0.4
124,897 + Ac3H11_303 0.22 -0.9
124,898 - Ac3H11_303 0.23 +0.0
124,898 - Ac3H11_303 0.23 +0.2
124,898 - Ac3H11_303 0.23 +0.1
124,898 - Ac3H11_303 0.23 +0.2
124,900 + Ac3H11_303 0.23 +1.7
124,900 + Ac3H11_303 0.23 +1.2
124,901 - Ac3H11_303 0.23 -0.0
124,901 - Ac3H11_303 0.23 +1.3
124,901 - Ac3H11_303 0.23 -1.6
124,901 - Ac3H11_303 0.23 -0.6
125,140 + Ac3H11_303 0.48 +0.2
125,140 + Ac3H11_303 0.48 -1.3
125,140 + Ac3H11_303 0.48 +0.6
125,140 + Ac3H11_303 0.48 +0.7
125,140 + Ac3H11_303 0.48 +1.4
125,140 + Ac3H11_303 0.48 -1.3
125,141 - Ac3H11_303 0.48 -2.6
125,141 - Ac3H11_303 0.48 -0.3
125,141 - Ac3H11_303 0.48 +0.1
125,141 - Ac3H11_303 0.48 +0.7
125,141 - Ac3H11_303 0.48 -1.8
125,141 - Ac3H11_303 0.48 -0.1
125,141 - Ac3H11_303 0.48 +0.3
125,188 + Ac3H11_303 0.53 -1.2
125,188 + Ac3H11_303 0.53 +0.8
125,189 - Ac3H11_303 0.53 -0.3
125,189 - Ac3H11_303 0.53 +0.1
125,194 + Ac3H11_303 0.53 -0.8
125,194 + Ac3H11_303 0.53 -1.1
125,194 + Ac3H11_303 0.53 +0.1
125,194 + Ac3H11_303 0.53 +0.1
125,195 - Ac3H11_303 0.53 -1.4
125,195 - Ac3H11_303 0.53 +0.3
125,195 - Ac3H11_303 0.53 +0.5
125,195 - Ac3H11_303 0.53 -2.1
125,195 - Ac3H11_303 0.53 -0.8
125,195 - Ac3H11_303 0.53 -1.0
125,195 - Ac3H11_303 0.53 +2.3
125,195 - Ac3H11_303 0.53 +0.9
125,195 - Ac3H11_303 0.53 +0.7
125,195 - Ac3H11_303 0.53 -0.8
125,236 + Ac3H11_303 0.58 -0.9
125,236 + Ac3H11_303 0.58 +0.6
125,236 + Ac3H11_303 0.58 -0.3
125,236 + Ac3H11_303 0.58 +1.3
125,237 + Ac3H11_303 0.58 -0.2
125,237 - Ac3H11_303 0.58 -2.9
125,237 - Ac3H11_303 0.58 -0.8
125,237 - Ac3H11_303 0.58 -0.4
125,237 - Ac3H11_303 0.58 +0.0
125,326 + Ac3H11_303 0.67 +1.4
125,326 + Ac3H11_303 0.67 -0.1
125,326 + Ac3H11_303 0.67 +0.2
125,327 - Ac3H11_303 0.67 -0.5
125,327 - Ac3H11_303 0.67 +4.5

Or see this region's nucleotide sequence