Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2878

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2877 and Ac3H11_2878 are separated by 169 nucleotidesAc3H11_2878 and Ac3H11_2879 are separated by 322 nucleotides Ac3H11_2877 - Nucleoside-diphosphate-sugar epimerases, at 1,186,129 to 1,187,295 _2877 Ac3H11_2878 - Inosose isomerase (EC 5.3.99.-), at 1,187,465 to 1,188,478 _2878 Ac3H11_2879 - Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 1,188,801 to 1,189,778 _2879 Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1186.759 kb on + strand, within Ac3H11_2877at 1186.787 kb on + strand, within Ac3H11_2877at 1186.787 kb on + strand, within Ac3H11_2877at 1186.788 kb on - strand, within Ac3H11_2877at 1186.871 kb on + strand, within Ac3H11_2877at 1186.871 kb on + strand, within Ac3H11_2877at 1186.872 kb on - strand, within Ac3H11_2877at 1186.872 kb on - strand, within Ac3H11_2877at 1186.872 kb on - strand, within Ac3H11_2877at 1186.872 kb on - strand, within Ac3H11_2877at 1186.877 kb on + strand, within Ac3H11_2877at 1186.877 kb on + strand, within Ac3H11_2877at 1186.877 kb on + strand, within Ac3H11_2877at 1186.877 kb on + strand, within Ac3H11_2877at 1186.877 kb on + strand, within Ac3H11_2877at 1186.878 kb on - strand, within Ac3H11_2877at 1187.267 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.295 kb on + strandat 1187.296 kb on - strandat 1187.784 kb on + strand, within Ac3H11_2878at 1187.784 kb on + strand, within Ac3H11_2878at 1187.784 kb on + strand, within Ac3H11_2878at 1187.784 kb on + strand, within Ac3H11_2878at 1187.785 kb on - strand, within Ac3H11_2878at 1187.821 kb on - strand, within Ac3H11_2878at 1187.821 kb on - strand, within Ac3H11_2878at 1187.836 kb on - strand, within Ac3H11_2878at 1187.856 kb on + strand, within Ac3H11_2878at 1187.856 kb on + strand, within Ac3H11_2878at 1187.856 kb on + strand, within Ac3H11_2878at 1187.857 kb on - strand, within Ac3H11_2878at 1187.857 kb on - strand, within Ac3H11_2878at 1187.857 kb on - strand, within Ac3H11_2878at 1188.033 kb on + strand, within Ac3H11_2878at 1188.034 kb on - strand, within Ac3H11_2878at 1188.034 kb on - strand, within Ac3H11_2878at 1188.034 kb on - strand, within Ac3H11_2878at 1188.034 kb on - strand, within Ac3H11_2878at 1188.060 kb on + strand, within Ac3H11_2878at 1188.324 kb on + strand, within Ac3H11_2878at 1188.324 kb on + strand, within Ac3H11_2878at 1188.325 kb on - strand, within Ac3H11_2878at 1188.325 kb on - strand, within Ac3H11_2878at 1188.325 kb on - strand, within Ac3H11_2878at 1188.393 kb on + strandat 1188.594 kb on - strandat 1188.716 kb on + strandat 1188.717 kb on - strandat 1188.824 kb on - strandat 1188.824 kb on - strandat 1188.931 kb on + strand, within Ac3H11_2879at 1188.931 kb on + strand, within Ac3H11_2879at 1188.931 kb on + strand, within Ac3H11_2879at 1188.932 kb on - strand, within Ac3H11_2879at 1188.949 kb on + strand, within Ac3H11_2879at 1189.138 kb on + strand, within Ac3H11_2879at 1189.183 kb on + strand, within Ac3H11_2879at 1189.321 kb on + strand, within Ac3H11_2879at 1189.322 kb on - strand, within Ac3H11_2879at 1189.366 kb on + strand, within Ac3H11_2879at 1189.366 kb on + strand, within Ac3H11_2879at 1189.367 kb on - strand, within Ac3H11_2879at 1189.367 kb on - strand, within Ac3H11_2879at 1189.417 kb on + strand, within Ac3H11_2879at 1189.417 kb on + strand, within Ac3H11_2879at 1189.417 kb on + strand, within Ac3H11_2879at 1189.417 kb on + strand, within Ac3H11_2879at 1189.417 kb on + strand, within Ac3H11_2879at 1189.418 kb on - strand, within Ac3H11_2879

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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1,186,759 + Ac3H11_2877 0.54 +0.4
1,186,787 + Ac3H11_2877 0.56 -0.8
1,186,787 + Ac3H11_2877 0.56 -0.9
1,186,788 - Ac3H11_2877 0.56 +1.2
1,186,871 + Ac3H11_2877 0.64 +0.4
1,186,871 + Ac3H11_2877 0.64 +0.2
1,186,872 - Ac3H11_2877 0.64 +0.2
1,186,872 - Ac3H11_2877 0.64 +0.7
1,186,872 - Ac3H11_2877 0.64 +1.0
1,186,872 - Ac3H11_2877 0.64 -0.4
1,186,877 + Ac3H11_2877 0.64 -2.0
1,186,877 + Ac3H11_2877 0.64 +0.1
1,186,877 + Ac3H11_2877 0.64 -1.0
1,186,877 + Ac3H11_2877 0.64 -0.5
1,186,877 + Ac3H11_2877 0.64 -0.7
1,186,878 - Ac3H11_2877 0.64 +0.9
1,187,267 + +0.0
1,187,295 + -1.5
1,187,295 + +0.2
1,187,295 + +1.1
1,187,295 + +1.4
1,187,295 + -0.6
1,187,295 + +0.3
1,187,295 + -2.2
1,187,295 + -1.7
1,187,296 - -3.2
1,187,784 + Ac3H11_2878 0.31 +0.0
1,187,784 + Ac3H11_2878 0.31 -1.3
1,187,784 + Ac3H11_2878 0.31 +0.2
1,187,784 + Ac3H11_2878 0.31 -0.8
1,187,785 - Ac3H11_2878 0.32 -0.0
1,187,821 - Ac3H11_2878 0.35 +0.7
1,187,821 - Ac3H11_2878 0.35 -0.3
1,187,836 - Ac3H11_2878 0.37 -2.3
1,187,856 + Ac3H11_2878 0.39 -0.8
1,187,856 + Ac3H11_2878 0.39 +0.5
1,187,856 + Ac3H11_2878 0.39 +0.2
1,187,857 - Ac3H11_2878 0.39 -0.8
1,187,857 - Ac3H11_2878 0.39 -0.3
1,187,857 - Ac3H11_2878 0.39 +0.7
1,188,033 + Ac3H11_2878 0.56 +0.3
1,188,034 - Ac3H11_2878 0.56 +2.1
1,188,034 - Ac3H11_2878 0.56 +0.7
1,188,034 - Ac3H11_2878 0.56 +0.2
1,188,034 - Ac3H11_2878 0.56 -0.9
1,188,060 + Ac3H11_2878 0.59 +0.4
1,188,324 + Ac3H11_2878 0.85 -0.1
1,188,324 + Ac3H11_2878 0.85 +0.1
1,188,325 - Ac3H11_2878 0.85 +0.5
1,188,325 - Ac3H11_2878 0.85 +0.2
1,188,325 - Ac3H11_2878 0.85 +2.0
1,188,393 + +0.1
1,188,594 - -0.8
1,188,716 + +0.3
1,188,717 - +0.0
1,188,824 - -1.8
1,188,824 - +0.4
1,188,931 + Ac3H11_2879 0.13 -0.5
1,188,931 + Ac3H11_2879 0.13 -0.6
1,188,931 + Ac3H11_2879 0.13 -1.3
1,188,932 - Ac3H11_2879 0.13 +2.2
1,188,949 + Ac3H11_2879 0.15 +1.0
1,189,138 + Ac3H11_2879 0.34 +0.3
1,189,183 + Ac3H11_2879 0.39 -1.1
1,189,321 + Ac3H11_2879 0.53 +0.1
1,189,322 - Ac3H11_2879 0.53 +0.3
1,189,366 + Ac3H11_2879 0.58 -0.2
1,189,366 + Ac3H11_2879 0.58 +0.2
1,189,367 - Ac3H11_2879 0.58 +0.4
1,189,367 - Ac3H11_2879 0.58 +1.2
1,189,417 + Ac3H11_2879 0.63 +0.3
1,189,417 + Ac3H11_2879 0.63 -0.5
1,189,417 + Ac3H11_2879 0.63 +0.4
1,189,417 + Ac3H11_2879 0.63 +0.5
1,189,417 + Ac3H11_2879 0.63 -1.6
1,189,418 - Ac3H11_2879 0.63 -0.6

Or see this region's nucleotide sequence