Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2526

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2524 and Ac3H11_2525 are separated by 1 nucleotidesAc3H11_2525 and Ac3H11_2526 are separated by 2 nucleotidesAc3H11_2526 and Ac3H11_2527 are separated by 4 nucleotides Ac3H11_2524 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 801,903 to 802,598 _2524 Ac3H11_2525 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 802,600 to 803,385 _2525 Ac3H11_2526 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 803,388 to 804,713 _2526 Ac3H11_2527 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 804,718 to 805,671 _2527 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 802.567 kb on + strandat 802.570 kb on + strandat 802.570 kb on + strandat 802.570 kb on + strandat 802.571 kb on - strandat 802.571 kb on - strandat 802.643 kb on + strandat 802.643 kb on + strandat 802.644 kb on - strandat 802.709 kb on + strand, within Ac3H11_2525at 802.710 kb on - strand, within Ac3H11_2525at 802.710 kb on - strand, within Ac3H11_2525at 802.710 kb on - strand, within Ac3H11_2525at 802.922 kb on + strand, within Ac3H11_2525at 802.923 kb on - strand, within Ac3H11_2525at 802.926 kb on + strand, within Ac3H11_2525at 802.926 kb on + strand, within Ac3H11_2525at 802.927 kb on - strand, within Ac3H11_2525at 803.036 kb on + strand, within Ac3H11_2525at 803.037 kb on - strand, within Ac3H11_2525at 803.037 kb on - strand, within Ac3H11_2525at 803.037 kb on - strand, within Ac3H11_2525at 803.043 kb on - strand, within Ac3H11_2525at 803.263 kb on + strand, within Ac3H11_2525at 803.263 kb on + strand, within Ac3H11_2525at 803.263 kb on + strand, within Ac3H11_2525at 803.264 kb on - strand, within Ac3H11_2525at 803.264 kb on - strand, within Ac3H11_2525at 803.264 kb on - strand, within Ac3H11_2525at 803.363 kb on + strandat 803.364 kb on - strandat 803.364 kb on - strandat 803.389 kb on + strandat 803.389 kb on + strandat 803.389 kb on + strandat 803.389 kb on + strandat 803.390 kb on - strandat 803.390 kb on - strandat 803.421 kb on + strandat 803.421 kb on + strandat 803.422 kb on - strandat 803.422 kb on - strandat 803.599 kb on + strand, within Ac3H11_2526at 803.600 kb on - strand, within Ac3H11_2526at 803.749 kb on + strand, within Ac3H11_2526at 803.749 kb on + strand, within Ac3H11_2526at 803.749 kb on + strand, within Ac3H11_2526at 803.750 kb on - strand, within Ac3H11_2526at 803.750 kb on - strand, within Ac3H11_2526at 804.013 kb on + strand, within Ac3H11_2526at 804.013 kb on + strand, within Ac3H11_2526at 804.155 kb on - strand, within Ac3H11_2526at 804.155 kb on - strand, within Ac3H11_2526at 804.155 kb on - strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.469 kb on + strand, within Ac3H11_2526at 804.470 kb on - strand, within Ac3H11_2526at 804.470 kb on - strand, within Ac3H11_2526at 804.520 kb on + strand, within Ac3H11_2526at 804.520 kb on + strand, within Ac3H11_2526at 804.520 kb on + strand, within Ac3H11_2526at 804.782 kb on + strandat 804.891 kb on - strand, within Ac3H11_2527at 805.034 kb on + strand, within Ac3H11_2527at 805.034 kb on + strand, within Ac3H11_2527at 805.034 kb on + strand, within Ac3H11_2527at 805.034 kb on + strand, within Ac3H11_2527at 805.034 kb on + strand, within Ac3H11_2527at 805.035 kb on - strand, within Ac3H11_2527at 805.035 kb on - strand, within Ac3H11_2527at 805.035 kb on - strand, within Ac3H11_2527at 805.035 kb on - strand, within Ac3H11_2527at 805.268 kb on + strand, within Ac3H11_2527at 805.268 kb on + strand, within Ac3H11_2527at 805.269 kb on - strand, within Ac3H11_2527at 805.269 kb on - strand, within Ac3H11_2527at 805.524 kb on - strand, within Ac3H11_2527at 805.538 kb on + strand, within Ac3H11_2527at 805.538 kb on + strand, within Ac3H11_2527at 805.538 kb on + strand, within Ac3H11_2527at 805.538 kb on + strand, within Ac3H11_2527at 805.538 kb on + strand, within Ac3H11_2527at 805.539 kb on - strand, within Ac3H11_2527at 805.539 kb on - strand, within Ac3H11_2527

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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802,567 + +0.2
802,570 + -1.8
802,570 + +0.4
802,570 + -0.5
802,571 - +0.9
802,571 - +0.4
802,643 + -1.0
802,643 + -1.3
802,644 - +0.1
802,709 + Ac3H11_2525 0.14 -0.1
802,710 - Ac3H11_2525 0.14 -3.1
802,710 - Ac3H11_2525 0.14 +0.1
802,710 - Ac3H11_2525 0.14 -1.8
802,922 + Ac3H11_2525 0.41 -1.8
802,923 - Ac3H11_2525 0.41 -1.2
802,926 + Ac3H11_2525 0.41 -2.8
802,926 + Ac3H11_2525 0.41 -1.1
802,927 - Ac3H11_2525 0.42 -0.5
803,036 + Ac3H11_2525 0.55 -2.6
803,037 - Ac3H11_2525 0.56 -2.5
803,037 - Ac3H11_2525 0.56 -2.4
803,037 - Ac3H11_2525 0.56 -1.3
803,043 - Ac3H11_2525 0.56 -1.1
803,263 + Ac3H11_2525 0.84 -0.3
803,263 + Ac3H11_2525 0.84 +1.7
803,263 + Ac3H11_2525 0.84 -1.2
803,264 - Ac3H11_2525 0.84 +0.8
803,264 - Ac3H11_2525 0.84 +1.1
803,264 - Ac3H11_2525 0.84 -1.0
803,363 + +0.1
803,364 - -0.7
803,364 - +0.9
803,389 + +0.7
803,389 + +0.2
803,389 + -0.4
803,389 + -0.7
803,390 - -0.8
803,390 - +0.9
803,421 + -2.1
803,421 + -1.4
803,422 - +1.4
803,422 - -1.1
803,599 + Ac3H11_2526 0.16 -0.1
803,600 - Ac3H11_2526 0.16 -3.1
803,749 + Ac3H11_2526 0.27 -1.6
803,749 + Ac3H11_2526 0.27 -1.5
803,749 + Ac3H11_2526 0.27 -2.5
803,750 - Ac3H11_2526 0.27 +0.8
803,750 - Ac3H11_2526 0.27 -0.4
804,013 + Ac3H11_2526 0.47 +2.1
804,013 + Ac3H11_2526 0.47 +0.7
804,155 - Ac3H11_2526 0.58 +0.4
804,155 - Ac3H11_2526 0.58 -0.8
804,155 - Ac3H11_2526 0.58 +0.2
804,157 + Ac3H11_2526 0.58 -0.6
804,157 + Ac3H11_2526 0.58 -1.4
804,157 + Ac3H11_2526 0.58 -0.6
804,157 + Ac3H11_2526 0.58 +0.4
804,469 + Ac3H11_2526 0.82 -1.1
804,470 - Ac3H11_2526 0.82 +0.1
804,470 - Ac3H11_2526 0.82 +0.1
804,520 + Ac3H11_2526 0.85 -1.6
804,520 + Ac3H11_2526 0.85 -2.4
804,520 + Ac3H11_2526 0.85 -1.7
804,782 + -0.5
804,891 - Ac3H11_2527 0.18 -3.0
805,034 + Ac3H11_2527 0.33 -2.3
805,034 + Ac3H11_2527 0.33 -1.8
805,034 + Ac3H11_2527 0.33 -0.3
805,034 + Ac3H11_2527 0.33 -0.3
805,034 + Ac3H11_2527 0.33 -1.8
805,035 - Ac3H11_2527 0.33 -1.8
805,035 - Ac3H11_2527 0.33 -1.9
805,035 - Ac3H11_2527 0.33 -0.2
805,035 - Ac3H11_2527 0.33 +0.4
805,268 + Ac3H11_2527 0.58 +0.7
805,268 + Ac3H11_2527 0.58 +0.5
805,269 - Ac3H11_2527 0.58 +0.5
805,269 - Ac3H11_2527 0.58 -3.3
805,524 - Ac3H11_2527 0.84 -1.1
805,538 + Ac3H11_2527 0.86 -0.1
805,538 + Ac3H11_2527 0.86 +1.1
805,538 + Ac3H11_2527 0.86 -0.3
805,538 + Ac3H11_2527 0.86 -2.6
805,538 + Ac3H11_2527 0.86 -0.7
805,539 - Ac3H11_2527 0.86 -2.2
805,539 - Ac3H11_2527 0.86 -1.1

Or see this region's nucleotide sequence