Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2257

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2256 and Ac3H11_2257 are separated by 67 nucleotidesAc3H11_2257 and Ac3H11_2258 are separated by 92 nucleotides Ac3H11_2256 - Na+ driven multidrug efflux pump, at 490,086 to 491,507 _2256 Ac3H11_2257 - Short-chain dehydrogenase/reductase SDR, at 491,575 to 492,378 _2257 Ac3H11_2258 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 492,471 to 494,855 _2258 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.731 kb on + strand, within Ac3H11_2256at 490.731 kb on + strand, within Ac3H11_2256at 490.731 kb on + strand, within Ac3H11_2256at 490.734 kb on + strand, within Ac3H11_2256at 490.734 kb on + strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.765 kb on - strand, within Ac3H11_2256at 490.765 kb on - strand, within Ac3H11_2256at 490.947 kb on + strand, within Ac3H11_2256at 490.948 kb on - strand, within Ac3H11_2256at 490.971 kb on + strand, within Ac3H11_2256at 490.971 kb on + strand, within Ac3H11_2256at 490.972 kb on - strand, within Ac3H11_2256at 490.972 kb on - strand, within Ac3H11_2256at 491.196 kb on + strand, within Ac3H11_2256at 491.220 kb on + strand, within Ac3H11_2256at 491.220 kb on + strand, within Ac3H11_2256at 491.221 kb on - strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.250 kb on + strand, within Ac3H11_2256at 491.251 kb on - strand, within Ac3H11_2256at 491.251 kb on - strand, within Ac3H11_2256at 491.251 kb on - strand, within Ac3H11_2256at 491.251 kb on - strand, within Ac3H11_2256at 491.251 kb on - strand, within Ac3H11_2256at 491.403 kb on + strandat 491.403 kb on + strandat 491.403 kb on + strandat 491.403 kb on + strandat 491.404 kb on - strandat 491.517 kb on - strandat 491.594 kb on + strandat 491.594 kb on + strandat 491.594 kb on + strandat 491.594 kb on + strandat 491.595 kb on - strandat 491.595 kb on - strandat 491.645 kb on + strandat 491.646 kb on - strandat 491.646 kb on - strandat 491.646 kb on - strandat 491.646 kb on - strandat 491.646 kb on - strandat 491.646 kb on - strandat 491.888 kb on + strand, within Ac3H11_2257at 491.888 kb on + strand, within Ac3H11_2257at 491.889 kb on - strand, within Ac3H11_2257at 491.889 kb on - strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.176 kb on + strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.177 kb on - strand, within Ac3H11_2257at 492.335 kb on + strandat 492.335 kb on + strandat 492.335 kb on + strandat 492.335 kb on + strandat 492.335 kb on + strandat 492.336 kb on - strandat 492.336 kb on - strandat 492.428 kb on + strandat 492.429 kb on - strandat 492.571 kb on + strandat 492.572 kb on - strandat 492.740 kb on - strand, within Ac3H11_2258at 492.790 kb on + strand, within Ac3H11_2258at 492.791 kb on - strand, within Ac3H11_2258at 492.853 kb on + strand, within Ac3H11_2258at 492.853 kb on + strand, within Ac3H11_2258at 492.853 kb on + strand, within Ac3H11_2258at 492.853 kb on + strand, within Ac3H11_2258at 492.854 kb on - strand, within Ac3H11_2258at 492.854 kb on - strand, within Ac3H11_2258at 492.854 kb on - strand, within Ac3H11_2258at 493.072 kb on + strand, within Ac3H11_2258at 493.115 kb on + strand, within Ac3H11_2258at 493.115 kb on + strand, within Ac3H11_2258at 493.115 kb on + strand, within Ac3H11_2258at 493.115 kb on + strand, within Ac3H11_2258at 493.116 kb on - strand, within Ac3H11_2258at 493.116 kb on - strand, within Ac3H11_2258at 493.348 kb on + strand, within Ac3H11_2258at 493.348 kb on + strand, within Ac3H11_2258at 493.348 kb on + strand, within Ac3H11_2258at 493.349 kb on - strand, within Ac3H11_2258at 493.349 kb on - strand, within Ac3H11_2258at 493.349 kb on - strand, within Ac3H11_2258at 493.349 kb on - strand, within Ac3H11_2258

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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490,617 + Ac3H11_2256 0.37 -0.9
490,617 + Ac3H11_2256 0.37 -0.5
490,617 + Ac3H11_2256 0.37 -1.0
490,617 + Ac3H11_2256 0.37 +0.2
490,617 + Ac3H11_2256 0.37 +0.2
490,617 + Ac3H11_2256 0.37 +0.4
490,617 + Ac3H11_2256 0.37 -2.3
490,617 + Ac3H11_2256 0.37 +0.9
490,617 + Ac3H11_2256 0.37 -1.4
490,617 + Ac3H11_2256 0.37 +1.0
490,617 + Ac3H11_2256 0.37 +1.2
490,617 + Ac3H11_2256 0.37 +0.3
490,617 + Ac3H11_2256 0.37 +1.2
490,618 - Ac3H11_2256 0.37 +0.8
490,618 - Ac3H11_2256 0.37 -0.1
490,618 - Ac3H11_2256 0.37 +0.6
490,618 - Ac3H11_2256 0.37 +0.1
490,618 - Ac3H11_2256 0.37 +0.2
490,618 - Ac3H11_2256 0.37 +1.6
490,731 + Ac3H11_2256 0.45 -0.3
490,731 + Ac3H11_2256 0.45 +1.8
490,731 + Ac3H11_2256 0.45 -0.4
490,734 + Ac3H11_2256 0.46 -2.4
490,734 + Ac3H11_2256 0.46 +0.8
490,735 - Ac3H11_2256 0.46 -1.2
490,735 - Ac3H11_2256 0.46 +0.4
490,735 - Ac3H11_2256 0.46 +0.4
490,735 - Ac3H11_2256 0.46 -0.6
490,764 + Ac3H11_2256 0.48 +2.6
490,764 + Ac3H11_2256 0.48 +1.7
490,764 + Ac3H11_2256 0.48 +1.0
490,764 + Ac3H11_2256 0.48 -0.4
490,765 - Ac3H11_2256 0.48 -0.5
490,765 - Ac3H11_2256 0.48 -0.1
490,947 + Ac3H11_2256 0.61 -1.4
490,948 - Ac3H11_2256 0.61 -1.6
490,971 + Ac3H11_2256 0.62 -0.1
490,971 + Ac3H11_2256 0.62 +2.6
490,972 - Ac3H11_2256 0.62 +1.0
490,972 - Ac3H11_2256 0.62 +1.3
491,196 + Ac3H11_2256 0.78 -1.4
491,220 + Ac3H11_2256 0.80 -1.2
491,220 + Ac3H11_2256 0.80 +0.6
491,221 - Ac3H11_2256 0.80 -0.5
491,250 + Ac3H11_2256 0.82 -1.6
491,250 + Ac3H11_2256 0.82 +1.1
491,250 + Ac3H11_2256 0.82 +0.5
491,250 + Ac3H11_2256 0.82 +1.8
491,250 + Ac3H11_2256 0.82 -0.5
491,250 + Ac3H11_2256 0.82 -0.3
491,250 + Ac3H11_2256 0.82 -1.5
491,251 - Ac3H11_2256 0.82 +1.6
491,251 - Ac3H11_2256 0.82 -1.7
491,251 - Ac3H11_2256 0.82 -1.2
491,251 - Ac3H11_2256 0.82 +1.0
491,251 - Ac3H11_2256 0.82 +1.6
491,403 + -1.6
491,403 + -2.4
491,403 + -0.1
491,403 + +0.6
491,404 - +0.2
491,517 - +0.3
491,594 + +1.0
491,594 + +0.6
491,594 + -0.6
491,594 + +0.6
491,595 - +1.4
491,595 - -0.1
491,645 + -0.6
491,646 - +1.6
491,646 - +0.6
491,646 - -1.8
491,646 - +0.4
491,646 - +1.6
491,646 - +0.2
491,888 + Ac3H11_2257 0.39 -0.0
491,888 + Ac3H11_2257 0.39 +0.0
491,889 - Ac3H11_2257 0.39 +1.4
491,889 - Ac3H11_2257 0.39 -0.4
492,176 + Ac3H11_2257 0.75 -0.1
492,176 + Ac3H11_2257 0.75 +2.5
492,176 + Ac3H11_2257 0.75 -0.1
492,176 + Ac3H11_2257 0.75 -1.6
492,176 + Ac3H11_2257 0.75 +0.9
492,176 + Ac3H11_2257 0.75 +0.3
492,176 + Ac3H11_2257 0.75 -3.1
492,176 + Ac3H11_2257 0.75 +0.1
492,176 + Ac3H11_2257 0.75 -1.6
492,176 + Ac3H11_2257 0.75 -1.6
492,176 + Ac3H11_2257 0.75 -3.2
492,177 - Ac3H11_2257 0.75 -0.1
492,177 - Ac3H11_2257 0.75 +0.4
492,177 - Ac3H11_2257 0.75 -0.7
492,177 - Ac3H11_2257 0.75 +0.6
492,177 - Ac3H11_2257 0.75 +0.1
492,177 - Ac3H11_2257 0.75 +0.6
492,177 - Ac3H11_2257 0.75 +0.2
492,177 - Ac3H11_2257 0.75 +1.5
492,177 - Ac3H11_2257 0.75 +0.3
492,177 - Ac3H11_2257 0.75 -1.5
492,177 - Ac3H11_2257 0.75 -1.9
492,177 - Ac3H11_2257 0.75 +0.3
492,177 - Ac3H11_2257 0.75 +0.5
492,177 - Ac3H11_2257 0.75 +2.2
492,177 - Ac3H11_2257 0.75 +0.2
492,177 - Ac3H11_2257 0.75 +1.0
492,335 + +0.3
492,335 + -0.4
492,335 + +1.4
492,335 + +0.7
492,335 + -0.1
492,336 - -0.3
492,336 - -1.1
492,428 + +0.5
492,429 - +0.8
492,571 + +0.3
492,572 - +0.3
492,740 - Ac3H11_2258 0.11 +1.6
492,790 + Ac3H11_2258 0.13 +0.2
492,791 - Ac3H11_2258 0.13 -0.4
492,853 + Ac3H11_2258 0.16 +0.7
492,853 + Ac3H11_2258 0.16 +1.6
492,853 + Ac3H11_2258 0.16 +0.3
492,853 + Ac3H11_2258 0.16 -1.5
492,854 - Ac3H11_2258 0.16 +1.9
492,854 - Ac3H11_2258 0.16 -0.9
492,854 - Ac3H11_2258 0.16 -0.9
493,072 + Ac3H11_2258 0.25 +0.2
493,115 + Ac3H11_2258 0.27 +0.8
493,115 + Ac3H11_2258 0.27 -1.3
493,115 + Ac3H11_2258 0.27 -1.2
493,115 + Ac3H11_2258 0.27 +0.5
493,116 - Ac3H11_2258 0.27 +1.1
493,116 - Ac3H11_2258 0.27 -2.1
493,348 + Ac3H11_2258 0.37 -1.2
493,348 + Ac3H11_2258 0.37 -1.7
493,348 + Ac3H11_2258 0.37 +1.2
493,349 - Ac3H11_2258 0.37 -0.8
493,349 - Ac3H11_2258 0.37 -3.2
493,349 - Ac3H11_2258 0.37 -0.4
493,349 - Ac3H11_2258 0.37 -0.0

Or see this region's nucleotide sequence