Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2104

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2103 and Ac3H11_2104 are separated by 68 nucleotidesAc3H11_2104 and Ac3H11_2105 are separated by 476 nucleotides Ac3H11_2103 - Lipoate synthase, at 328,470 to 329,450 _2103 Ac3H11_2104 - Type I secretion system, outer membrane component LapE # AggA, at 329,519 to 330,742 _2104 Ac3H11_2105 - T1SS associated transglutaminase-like cysteine proteinase LapP, at 331,219 to 331,860 _2105 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 329.594 kb on - strandat 329.792 kb on + strand, within Ac3H11_2104at 329.793 kb on - strand, within Ac3H11_2104at 329.805 kb on + strand, within Ac3H11_2104at 329.805 kb on + strand, within Ac3H11_2104at 329.806 kb on - strand, within Ac3H11_2104at 329.806 kb on - strand, within Ac3H11_2104at 329.806 kb on - strand, within Ac3H11_2104at 329.806 kb on - strand, within Ac3H11_2104at 329.806 kb on - strand, within Ac3H11_2104at 329.806 kb on - strand, within Ac3H11_2104at 329.820 kb on + strand, within Ac3H11_2104at 329.820 kb on + strand, within Ac3H11_2104at 329.821 kb on - strand, within Ac3H11_2104at 329.821 kb on - strand, within Ac3H11_2104at 329.821 kb on - strand, within Ac3H11_2104at 329.821 kb on - strand, within Ac3H11_2104at 329.821 kb on - strand, within Ac3H11_2104at 329.904 kb on + strand, within Ac3H11_2104at 329.904 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.949 kb on + strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 329.950 kb on - strand, within Ac3H11_2104at 330.100 kb on - strand, within Ac3H11_2104at 330.100 kb on - strand, within Ac3H11_2104at 330.108 kb on + strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.109 kb on - strand, within Ac3H11_2104at 330.399 kb on + strand, within Ac3H11_2104at 330.556 kb on - strand, within Ac3H11_2104at 330.556 kb on - strand, within Ac3H11_2104at 330.657 kb on + strandat 330.657 kb on + strandat 330.657 kb on + strandat 330.657 kb on + strandat 330.657 kb on + strandat 330.657 kb on + strandat 330.657 kb on + strandat 330.658 kb on - strandat 330.658 kb on - strandat 330.658 kb on - strandat 330.658 kb on - strandat 330.660 kb on + strandat 330.660 kb on + strandat 330.660 kb on + strandat 330.660 kb on + strandat 330.660 kb on + strandat 330.762 kb on + strandat 330.762 kb on + strandat 330.762 kb on + strandat 330.763 kb on - strandat 330.788 kb on + strandat 330.788 kb on + strandat 330.789 kb on - strandat 330.789 kb on - strandat 330.789 kb on - strandat 330.789 kb on - strandat 330.789 kb on - strandat 330.789 kb on - strandat 330.976 kb on + strandat 330.976 kb on + strandat 330.976 kb on + strandat 330.976 kb on + strandat 331.006 kb on + strandat 331.006 kb on + strandat 331.006 kb on + strandat 331.007 kb on - strandat 331.007 kb on - strandat 331.007 kb on - strandat 331.007 kb on - strandat 331.060 kb on - strandat 331.066 kb on + strandat 331.066 kb on + strandat 331.066 kb on + strandat 331.093 kb on + strandat 331.100 kb on + strandat 331.101 kb on - strandat 331.123 kb on + strandat 331.123 kb on + strandat 331.123 kb on + strandat 331.124 kb on - strandat 331.124 kb on - strandat 331.138 kb on + strandat 331.138 kb on + strandat 331.139 kb on - strandat 331.193 kb on + strandat 331.193 kb on + strandat 331.193 kb on + strandat 331.193 kb on + strandat 331.193 kb on + strandat 331.193 kb on + strandat 331.194 kb on - strandat 331.309 kb on + strand, within Ac3H11_2105at 331.310 kb on - strand, within Ac3H11_2105at 331.440 kb on + strand, within Ac3H11_2105at 331.440 kb on + strand, within Ac3H11_2105at 331.441 kb on - strand, within Ac3H11_2105at 331.465 kb on + strand, within Ac3H11_2105at 331.465 kb on + strand, within Ac3H11_2105at 331.465 kb on + strand, within Ac3H11_2105at 331.466 kb on - strand, within Ac3H11_2105at 331.466 kb on - strand, within Ac3H11_2105at 331.466 kb on - strand, within Ac3H11_2105at 331.534 kb on + strand, within Ac3H11_2105at 331.534 kb on + strand, within Ac3H11_2105at 331.534 kb on + strand, within Ac3H11_2105at 331.534 kb on + strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.535 kb on - strand, within Ac3H11_2105at 331.585 kb on + strand, within Ac3H11_2105at 331.585 kb on + strand, within Ac3H11_2105at 331.585 kb on + strand, within Ac3H11_2105at 331.585 kb on + strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.586 kb on - strand, within Ac3H11_2105at 331.648 kb on + strand, within Ac3H11_2105at 331.648 kb on + strand, within Ac3H11_2105at 331.649 kb on - strand, within Ac3H11_2105at 331.649 kb on - strand, within Ac3H11_2105at 331.651 kb on + strand, within Ac3H11_2105at 331.651 kb on + strand, within Ac3H11_2105at 331.651 kb on + strand, within Ac3H11_2105at 331.651 kb on + strand, within Ac3H11_2105at 331.651 kb on + strand, within Ac3H11_2105at 331.651 kb on + strand, within Ac3H11_2105at 331.652 kb on - strand, within Ac3H11_2105at 331.652 kb on - strand, within Ac3H11_2105at 331.652 kb on - strand, within Ac3H11_2105at 331.652 kb on - strand, within Ac3H11_2105at 331.652 kb on - strand, within Ac3H11_2105

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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329,594 - -0.7
329,792 + Ac3H11_2104 0.22 -0.1
329,793 - Ac3H11_2104 0.22 -0.3
329,805 + Ac3H11_2104 0.23 +0.7
329,805 + Ac3H11_2104 0.23 -1.2
329,806 - Ac3H11_2104 0.23 -0.8
329,806 - Ac3H11_2104 0.23 -0.1
329,806 - Ac3H11_2104 0.23 -1.6
329,806 - Ac3H11_2104 0.23 -2.2
329,806 - Ac3H11_2104 0.23 +1.7
329,806 - Ac3H11_2104 0.23 -1.1
329,820 + Ac3H11_2104 0.25 -0.4
329,820 + Ac3H11_2104 0.25 -1.1
329,821 - Ac3H11_2104 0.25 -0.1
329,821 - Ac3H11_2104 0.25 -0.8
329,821 - Ac3H11_2104 0.25 +0.5
329,821 - Ac3H11_2104 0.25 -2.2
329,821 - Ac3H11_2104 0.25 -0.1
329,904 + Ac3H11_2104 0.31 -1.1
329,904 + Ac3H11_2104 0.31 -0.6
329,949 + Ac3H11_2104 0.35 +1.1
329,949 + Ac3H11_2104 0.35 +0.6
329,949 + Ac3H11_2104 0.35 -0.9
329,949 + Ac3H11_2104 0.35 -1.5
329,949 + Ac3H11_2104 0.35 +0.6
329,949 + Ac3H11_2104 0.35 +0.4
329,949 + Ac3H11_2104 0.35 +0.5
329,950 - Ac3H11_2104 0.35 -1.0
329,950 - Ac3H11_2104 0.35 +0.4
329,950 - Ac3H11_2104 0.35 +1.1
329,950 - Ac3H11_2104 0.35 +0.9
329,950 - Ac3H11_2104 0.35 +1.5
329,950 - Ac3H11_2104 0.35 +0.4
329,950 - Ac3H11_2104 0.35 -0.8
329,950 - Ac3H11_2104 0.35 -0.7
329,950 - Ac3H11_2104 0.35 -0.2
330,100 - Ac3H11_2104 0.47 -0.7
330,100 - Ac3H11_2104 0.47 -1.6
330,108 + Ac3H11_2104 0.48 -0.0
330,109 - Ac3H11_2104 0.48 -1.1
330,109 - Ac3H11_2104 0.48 -0.2
330,109 - Ac3H11_2104 0.48 -0.3
330,109 - Ac3H11_2104 0.48 +0.4
330,109 - Ac3H11_2104 0.48 +0.7
330,109 - Ac3H11_2104 0.48 -0.3
330,109 - Ac3H11_2104 0.48 -1.7
330,109 - Ac3H11_2104 0.48 +0.5
330,109 - Ac3H11_2104 0.48 -0.3
330,399 + Ac3H11_2104 0.72 -0.0
330,556 - Ac3H11_2104 0.85 +1.2
330,556 - Ac3H11_2104 0.85 +0.5
330,657 + -0.3
330,657 + -0.3
330,657 + -1.0
330,657 + -0.7
330,657 + -1.1
330,657 + +0.1
330,657 + -0.4
330,658 - +0.6
330,658 - -0.2
330,658 - -2.0
330,658 - +0.8
330,660 + +0.1
330,660 + +0.6
330,660 + +1.5
330,660 + +0.7
330,660 + -0.5
330,762 + -0.5
330,762 + +0.3
330,762 + +0.3
330,763 - -1.0
330,788 + +3.1
330,788 + +0.2
330,789 - -0.5
330,789 - +0.7
330,789 - +0.7
330,789 - +0.3
330,789 - +0.6
330,789 - -2.1
330,976 + -0.4
330,976 + -0.3
330,976 + -2.0
330,976 + -0.5
331,006 + -1.1
331,006 + -1.4
331,006 + -1.6
331,007 - +0.3
331,007 - +0.5
331,007 - -1.1
331,007 - -0.2
331,060 - -1.8
331,066 + +0.8
331,066 + +0.7
331,066 + -0.5
331,093 + +1.0
331,100 + +0.0
331,101 - +0.0
331,123 + +0.7
331,123 + +0.4
331,123 + -0.2
331,124 - +1.1
331,124 - +0.4
331,138 + +0.2
331,138 + -0.4
331,139 - -0.5
331,193 + -0.5
331,193 + +0.0
331,193 + -1.7
331,193 + -0.2
331,193 + +0.8
331,193 + -0.3
331,194 - -1.1
331,309 + Ac3H11_2105 0.14 +0.1
331,310 - Ac3H11_2105 0.14 +0.6
331,440 + Ac3H11_2105 0.34 -1.2
331,440 + Ac3H11_2105 0.34 -0.3
331,441 - Ac3H11_2105 0.35 -2.2
331,465 + Ac3H11_2105 0.38 +0.5
331,465 + Ac3H11_2105 0.38 -1.1
331,465 + Ac3H11_2105 0.38 -0.9
331,466 - Ac3H11_2105 0.38 +0.6
331,466 - Ac3H11_2105 0.38 -0.4
331,466 - Ac3H11_2105 0.38 -1.9
331,534 + Ac3H11_2105 0.49 -0.7
331,534 + Ac3H11_2105 0.49 -2.5
331,534 + Ac3H11_2105 0.49 +0.4
331,534 + Ac3H11_2105 0.49 +0.1
331,535 - Ac3H11_2105 0.49 -1.5
331,535 - Ac3H11_2105 0.49 -1.2
331,535 - Ac3H11_2105 0.49 +0.3
331,535 - Ac3H11_2105 0.49 -1.3
331,535 - Ac3H11_2105 0.49 -2.9
331,535 - Ac3H11_2105 0.49 +0.6
331,535 - Ac3H11_2105 0.49 -1.8
331,535 - Ac3H11_2105 0.49 -0.2
331,535 - Ac3H11_2105 0.49 -0.1
331,535 - Ac3H11_2105 0.49 +0.2
331,535 - Ac3H11_2105 0.49 +0.3
331,585 + Ac3H11_2105 0.57 +1.4
331,585 + Ac3H11_2105 0.57 -0.6
331,585 + Ac3H11_2105 0.57 +0.2
331,585 + Ac3H11_2105 0.57 +0.1
331,586 - Ac3H11_2105 0.57 -0.1
331,586 - Ac3H11_2105 0.57 +0.2
331,586 - Ac3H11_2105 0.57 +0.1
331,586 - Ac3H11_2105 0.57 -0.7
331,586 - Ac3H11_2105 0.57 +0.1
331,586 - Ac3H11_2105 0.57 +0.8
331,586 - Ac3H11_2105 0.57 -1.4
331,586 - Ac3H11_2105 0.57 +0.0
331,586 - Ac3H11_2105 0.57 -2.5
331,586 - Ac3H11_2105 0.57 +0.9
331,586 - Ac3H11_2105 0.57 +0.3
331,648 + Ac3H11_2105 0.67 -3.5
331,648 + Ac3H11_2105 0.67 -1.2
331,649 - Ac3H11_2105 0.67 -0.7
331,649 - Ac3H11_2105 0.67 -2.8
331,651 + Ac3H11_2105 0.67 -1.5
331,651 + Ac3H11_2105 0.67 +0.3
331,651 + Ac3H11_2105 0.67 +0.1
331,651 + Ac3H11_2105 0.67 -1.3
331,651 + Ac3H11_2105 0.67 +0.8
331,651 + Ac3H11_2105 0.67 +1.8
331,652 - Ac3H11_2105 0.67 +1.0
331,652 - Ac3H11_2105 0.67 -0.1
331,652 - Ac3H11_2105 0.67 +0.3
331,652 - Ac3H11_2105 0.67 -1.5
331,652 - Ac3H11_2105 0.67 -0.4

Or see this region's nucleotide sequence