Experiment: Bacitracin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1837 and Ac3H11_1838 are separated by 88 nucleotides Ac3H11_1838 and Ac3H11_1839 overlap by 4 nucleotides Ac3H11_1839 and Ac3H11_1840 overlap by 4 nucleotides
Ac3H11_1837 - Beta-lactamase-like, at 37,139 to 38,083
_1837
Ac3H11_1838 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 38,172 to 38,561
_1838
Ac3H11_1839 - Ribokinase (EC 2.7.1.15), at 38,558 to 39,502
_1839
Ac3H11_1840 - Ribose operon repressor, at 39,499 to 40,521
_1840
Position (kb) 38
39 Strain fitness (log2 ratio) -1
0
1
2 at 37.267 kb on - strand, within Ac3H11_1837 at 37.267 kb on - strand, within Ac3H11_1837 at 37.267 kb on - strand, within Ac3H11_1837 at 37.333 kb on - strand, within Ac3H11_1837 at 37.333 kb on - strand, within Ac3H11_1837 at 37.356 kb on + strand, within Ac3H11_1837 at 37.357 kb on - strand, within Ac3H11_1837 at 37.744 kb on - strand, within Ac3H11_1837 at 37.744 kb on - strand, within Ac3H11_1837 at 37.755 kb on + strand, within Ac3H11_1837 at 37.755 kb on + strand, within Ac3H11_1837 at 37.756 kb on - strand, within Ac3H11_1837 at 37.756 kb on - strand, within Ac3H11_1837 at 37.923 kb on - strand, within Ac3H11_1837 at 38.102 kb on - strand at 38.784 kb on + strand, within Ac3H11_1839
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml remove 37,267 - Ac3H11_1837 0.14 +1.8 37,267 - Ac3H11_1837 0.14 -0.9 37,267 - Ac3H11_1837 0.14 -0.6 37,333 - Ac3H11_1837 0.21 +0.6 37,333 - Ac3H11_1837 0.21 +1.0 37,356 + Ac3H11_1837 0.23 -0.2 37,357 - Ac3H11_1837 0.23 -1.2 37,744 - Ac3H11_1837 0.64 -0.6 37,744 - Ac3H11_1837 0.64 +0.2 37,755 + Ac3H11_1837 0.65 +1.0 37,755 + Ac3H11_1837 0.65 +0.1 37,756 - Ac3H11_1837 0.65 -1.0 37,756 - Ac3H11_1837 0.65 +0.4 37,923 - Ac3H11_1837 0.83 +0.2 38,102 - -0.1 38,784 + Ac3H11_1839 0.24 -1.2
Or see this region's nucleotide sequence