Experiment: Bacitracin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1380 and Ac3H11_1381 are separated by 77 nucleotides Ac3H11_1381 and Ac3H11_1382 are separated by 27 nucleotides Ac3H11_1382 and Ac3H11_1383 overlap by 8 nucleotides
Ac3H11_1380 - hypothetical protein, at 68,708 to 69,082
_1380
Ac3H11_1381 - RNA polymerase sigma factor for flagellar operon, at 69,160 to 69,876
_1381
Ac3H11_1382 - FIG00538194: hypothetical protein, at 69,904 to 70,701
_1382
Ac3H11_1383 - Flagellar biosynthesis protein FlhF, at 70,694 to 72,217
_1383
Position (kb)
69
70
71 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 69.014 kb on + strand, within Ac3H11_1380 at 69.015 kb on - strand, within Ac3H11_1380 at 69.015 kb on - strand, within Ac3H11_1380 at 69.015 kb on - strand, within Ac3H11_1380 at 69.015 kb on - strand, within Ac3H11_1380 at 69.065 kb on + strand at 69.065 kb on + strand at 69.065 kb on + strand at 69.066 kb on - strand at 69.133 kb on + strand at 69.134 kb on - strand at 69.149 kb on + strand at 69.150 kb on - strand at 69.150 kb on - strand at 69.278 kb on + strand, within Ac3H11_1381 at 69.278 kb on + strand, within Ac3H11_1381 at 69.278 kb on + strand, within Ac3H11_1381 at 69.278 kb on + strand, within Ac3H11_1381 at 69.278 kb on + strand, within Ac3H11_1381 at 69.279 kb on - strand, within Ac3H11_1381 at 69.279 kb on - strand, within Ac3H11_1381 at 69.279 kb on - strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.281 kb on + strand, within Ac3H11_1381 at 69.282 kb on - strand, within Ac3H11_1381 at 69.282 kb on - strand, within Ac3H11_1381 at 69.282 kb on - strand, within Ac3H11_1381 at 69.282 kb on - strand, within Ac3H11_1381 at 69.282 kb on - strand, within Ac3H11_1381 at 69.282 kb on - strand, within Ac3H11_1381 at 69.452 kb on + strand, within Ac3H11_1381 at 69.452 kb on + strand, within Ac3H11_1381 at 69.452 kb on + strand, within Ac3H11_1381 at 69.453 kb on - strand, within Ac3H11_1381 at 69.453 kb on - strand, within Ac3H11_1381 at 69.872 kb on + strand at 69.872 kb on + strand at 69.872 kb on + strand at 69.872 kb on + strand at 69.873 kb on - strand at 69.873 kb on - strand at 69.873 kb on - strand at 70.208 kb on + strand, within Ac3H11_1382 at 70.208 kb on + strand, within Ac3H11_1382 at 70.208 kb on + strand, within Ac3H11_1382 at 70.209 kb on - strand, within Ac3H11_1382 at 70.209 kb on - strand, within Ac3H11_1382 at 70.209 kb on - strand, within Ac3H11_1382 at 70.209 kb on - strand, within Ac3H11_1382 at 70.322 kb on + strand, within Ac3H11_1382 at 70.322 kb on + strand, within Ac3H11_1382 at 70.322 kb on + strand, within Ac3H11_1382 at 70.323 kb on - strand, within Ac3H11_1382 at 70.323 kb on - strand, within Ac3H11_1382 at 70.334 kb on + strand, within Ac3H11_1382 at 70.551 kb on - strand, within Ac3H11_1382 at 71.211 kb on + strand, within Ac3H11_1383 at 71.212 kb on - strand, within Ac3H11_1383 at 71.212 kb on - strand, within Ac3H11_1383 at 71.244 kb on + strand, within Ac3H11_1383 at 71.245 kb on - strand, within Ac3H11_1383 at 71.245 kb on - strand, within Ac3H11_1383 at 71.376 kb on + strand, within Ac3H11_1383 at 71.376 kb on + strand, within Ac3H11_1383 at 71.377 kb on - strand, within Ac3H11_1383 at 71.377 kb on - strand, within Ac3H11_1383 at 71.505 kb on + strand, within Ac3H11_1383
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml remove 69,014 + Ac3H11_1380 0.82 -2.2 69,015 - Ac3H11_1380 0.82 +0.6 69,015 - Ac3H11_1380 0.82 -1.7 69,015 - Ac3H11_1380 0.82 -1.0 69,015 - Ac3H11_1380 0.82 +0.5 69,065 + -0.5 69,065 + +0.5 69,065 + +0.4 69,066 - +1.0 69,133 + -0.9 69,134 - -0.9 69,149 + +0.4 69,150 - +0.5 69,150 - +0.3 69,278 + Ac3H11_1381 0.16 +1.3 69,278 + Ac3H11_1381 0.16 +0.3 69,278 + Ac3H11_1381 0.16 -2.6 69,278 + Ac3H11_1381 0.16 -1.9 69,278 + Ac3H11_1381 0.16 -0.4 69,279 - Ac3H11_1381 0.17 +0.6 69,279 - Ac3H11_1381 0.17 +1.2 69,279 - Ac3H11_1381 0.17 -0.2 69,281 + Ac3H11_1381 0.17 -0.6 69,281 + +1.8 69,281 + Ac3H11_1381 0.17 +1.0 69,281 + Ac3H11_1381 0.17 -1.3 69,281 + Ac3H11_1381 0.17 -0.7 69,281 + Ac3H11_1381 0.17 -1.1 69,281 + Ac3H11_1381 0.17 +1.0 69,281 + Ac3H11_1381 0.17 +0.2 69,281 + Ac3H11_1381 0.17 -1.7 69,281 + Ac3H11_1381 0.17 -0.2 69,282 - Ac3H11_1381 0.17 +1.2 69,282 - Ac3H11_1381 0.17 -0.6 69,282 - Ac3H11_1381 0.17 +0.3 69,282 - Ac3H11_1381 0.17 +0.4 69,282 - Ac3H11_1381 0.17 +0.0 69,282 - Ac3H11_1381 0.17 +1.4 69,452 + Ac3H11_1381 0.41 -0.0 69,452 + Ac3H11_1381 0.41 -0.2 69,452 + Ac3H11_1381 0.41 +0.3 69,453 - Ac3H11_1381 0.41 +1.8 69,453 - Ac3H11_1381 0.41 -1.0 69,872 + -1.4 69,872 + -0.3 69,872 + +1.3 69,872 + +0.5 69,873 - -0.5 69,873 - -0.8 69,873 - -0.6 70,208 + Ac3H11_1382 0.38 -0.1 70,208 + Ac3H11_1382 0.38 -2.4 70,208 + Ac3H11_1382 0.38 +0.2 70,209 - Ac3H11_1382 0.38 -0.5 70,209 - Ac3H11_1382 0.38 -0.7 70,209 - Ac3H11_1382 0.38 -0.9 70,209 - Ac3H11_1382 0.38 +0.7 70,322 + Ac3H11_1382 0.52 -0.8 70,322 + Ac3H11_1382 0.52 -1.4 70,322 + Ac3H11_1382 0.52 -2.6 70,323 - Ac3H11_1382 0.53 -0.3 70,323 - Ac3H11_1382 0.53 +0.1 70,334 + Ac3H11_1382 0.54 -0.2 70,551 - Ac3H11_1382 0.81 -1.2 71,211 + Ac3H11_1383 0.34 -0.6 71,212 - Ac3H11_1383 0.34 +0.2 71,212 - Ac3H11_1383 0.34 -2.8 71,244 + Ac3H11_1383 0.36 -0.6 71,245 - Ac3H11_1383 0.36 +1.0 71,245 - Ac3H11_1383 0.36 -0.3 71,376 + Ac3H11_1383 0.45 +0.5 71,376 + Ac3H11_1383 0.45 +0.8 71,377 - Ac3H11_1383 0.45 -1.7 71,377 - Ac3H11_1383 0.45 +0.3 71,505 + Ac3H11_1383 0.53 +1.8
Or see this region's nucleotide sequence