Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1259

Experiment: Bacitracin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1258 and Ac3H11_1259 are separated by 254 nucleotidesAc3H11_1259 and Ac3H11_1260 are separated by 24 nucleotides Ac3H11_1258 - Tricarboxylate transport protein TctC, at 76,463 to 77,428 _1258 Ac3H11_1259 - N-formylglutamate deformylase (EC 3.5.1.68), at 77,683 to 78,615 _1259 Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749 _1260 Position (kb) 77 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.763 kb on + strand, within Ac3H11_1258at 76.764 kb on - strand, within Ac3H11_1258at 76.778 kb on + strand, within Ac3H11_1258at 76.778 kb on + strand, within Ac3H11_1258at 76.778 kb on + strand, within Ac3H11_1258at 76.779 kb on - strand, within Ac3H11_1258at 76.779 kb on - strand, within Ac3H11_1258at 76.779 kb on - strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.168 kb on + strand, within Ac3H11_1258at 77.169 kb on - strand, within Ac3H11_1258at 77.169 kb on - strand, within Ac3H11_1258at 77.183 kb on + strand, within Ac3H11_1258at 77.250 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.328 kb on - strand, within Ac3H11_1258at 77.405 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.974 kb on + strand, within Ac3H11_1259at 77.974 kb on + strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.187 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.404 kb on - strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.429 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.668 kb on + strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.831 kb on - strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 79.193 kb on + strand, within Ac3H11_1260at 79.193 kb on + strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.208 kb on + strand, within Ac3H11_1260at 79.209 kb on - strand, within Ac3H11_1260at 79.418 kb on + strand, within Ac3H11_1260at 79.418 kb on + strand, within Ac3H11_1260

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.008 mg/ml
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76,763 + Ac3H11_1258 0.31 +1.3
76,764 - Ac3H11_1258 0.31 -0.8
76,778 + Ac3H11_1258 0.33 -2.5
76,778 + Ac3H11_1258 0.33 +0.4
76,778 + Ac3H11_1258 0.33 +0.0
76,779 - Ac3H11_1258 0.33 +0.8
76,779 - Ac3H11_1258 0.33 +0.0
76,779 - Ac3H11_1258 0.33 -1.8
76,919 + Ac3H11_1258 0.47 -1.0
76,919 + Ac3H11_1258 0.47 +0.4
76,919 + Ac3H11_1258 0.47 +1.1
76,919 + Ac3H11_1258 0.47 +0.1
76,919 + Ac3H11_1258 0.47 +0.3
76,919 + Ac3H11_1258 0.47 -1.1
76,919 + Ac3H11_1258 0.47 -0.5
76,919 + Ac3H11_1258 0.47 -1.5
76,919 + Ac3H11_1258 0.47 -1.5
76,920 - Ac3H11_1258 0.47 +0.1
76,920 - Ac3H11_1258 0.47 -2.8
76,920 - Ac3H11_1258 0.47 +0.1
76,920 - Ac3H11_1258 0.47 +0.4
76,920 - Ac3H11_1258 0.47 -0.2
76,920 - Ac3H11_1258 0.47 +0.6
76,920 - Ac3H11_1258 0.47 -1.6
77,060 + Ac3H11_1258 0.62 +0.1
77,060 + Ac3H11_1258 0.62 -0.1
77,060 + Ac3H11_1258 0.62 -0.1
77,060 + Ac3H11_1258 0.62 +0.7
77,060 + Ac3H11_1258 0.62 -1.3
77,060 + Ac3H11_1258 0.62 -1.1
77,061 - Ac3H11_1258 0.62 -0.1
77,061 - Ac3H11_1258 0.62 +0.9
77,061 - Ac3H11_1258 0.62 +0.3
77,061 - Ac3H11_1258 0.62 +0.3
77,061 - Ac3H11_1258 0.62 -0.9
77,061 - Ac3H11_1258 0.62 -2.1
77,061 - Ac3H11_1258 0.62 +2.6
77,061 - Ac3H11_1258 0.62 +0.2
77,168 + Ac3H11_1258 0.73 -0.0
77,169 - Ac3H11_1258 0.73 +0.1
77,169 - Ac3H11_1258 0.73 +0.9
77,183 + Ac3H11_1258 0.75 -0.5
77,250 + Ac3H11_1258 0.81 -0.2
77,327 + Ac3H11_1258 0.89 -0.1
77,327 + Ac3H11_1258 0.89 -1.0
77,327 + Ac3H11_1258 0.89 -1.0
77,327 + Ac3H11_1258 0.89 -1.4
77,327 + Ac3H11_1258 0.89 +1.9
77,328 - Ac3H11_1258 0.90 -0.6
77,405 + -0.3
77,682 + -1.3
77,682 + -1.2
77,682 + +0.6
77,682 + +0.4
77,682 + -0.4
77,683 - +0.4
77,683 - +1.1
77,683 - +1.3
77,974 + Ac3H11_1259 0.31 +0.2
77,974 + Ac3H11_1259 0.31 -0.5
77,975 - Ac3H11_1259 0.31 +0.6
77,975 - Ac3H11_1259 0.31 +1.1
77,975 - Ac3H11_1259 0.31 +0.4
78,127 + Ac3H11_1259 0.48 -1.7
78,127 + Ac3H11_1259 0.48 +0.9
78,127 + Ac3H11_1259 0.48 +0.6
78,127 + Ac3H11_1259 0.48 -1.1
78,127 + Ac3H11_1259 0.48 -1.2
78,127 + Ac3H11_1259 0.48 -0.2
78,127 + Ac3H11_1259 0.48 +0.3
78,127 + Ac3H11_1259 0.48 -0.3
78,128 - Ac3H11_1259 0.48 +0.5
78,128 - Ac3H11_1259 0.48 +0.4
78,128 - Ac3H11_1259 0.48 -0.6
78,128 - Ac3H11_1259 0.48 +0.9
78,128 - Ac3H11_1259 0.48 +0.8
78,128 - Ac3H11_1259 0.48 -2.2
78,128 - Ac3H11_1259 0.48 +1.3
78,187 + Ac3H11_1259 0.54 +1.7
78,403 + Ac3H11_1259 0.77 -0.9
78,403 + Ac3H11_1259 0.77 -1.9
78,404 - Ac3H11_1259 0.77 +0.9
78,415 + Ac3H11_1259 0.78 +1.1
78,415 + Ac3H11_1259 0.78 +0.8
78,415 + Ac3H11_1259 0.78 -0.7
78,415 + Ac3H11_1259 0.78 +0.8
78,416 - Ac3H11_1259 0.79 +0.5
78,416 - Ac3H11_1259 0.79 -0.9
78,427 + Ac3H11_1259 0.80 +0.3
78,427 + Ac3H11_1259 0.80 -1.3
78,427 + Ac3H11_1259 0.80 +0.7
78,428 - Ac3H11_1259 0.80 +0.1
78,428 - Ac3H11_1259 0.80 -0.4
78,428 - Ac3H11_1259 0.80 -2.8
78,428 - Ac3H11_1259 0.80 +0.5
78,428 - Ac3H11_1259 0.80 +0.1
78,428 - Ac3H11_1259 0.80 -0.3
78,428 - Ac3H11_1259 0.80 -1.1
78,429 + Ac3H11_1259 0.80 +0.8
78,511 + Ac3H11_1259 0.89 -1.6
78,511 + Ac3H11_1259 0.89 -0.7
78,511 + Ac3H11_1259 0.89 +0.2
78,511 + Ac3H11_1259 0.89 -0.0
78,511 + Ac3H11_1259 0.89 -0.1
78,511 + Ac3H11_1259 0.89 -0.7
78,511 + Ac3H11_1259 0.89 +0.0
78,511 + Ac3H11_1259 0.89 -0.1
78,512 - Ac3H11_1259 0.89 -2.0
78,512 - Ac3H11_1259 0.89 -2.2
78,512 - Ac3H11_1259 0.89 +0.2
78,512 - Ac3H11_1259 0.89 -0.2
78,512 - Ac3H11_1259 0.89 +0.6
78,668 + -0.3
78,669 - +0.9
78,669 - -1.8
78,669 - -0.3
78,669 - +1.6
78,669 - +0.1
78,669 - -0.0
78,669 - +0.2
78,831 - Ac3H11_1260 0.17 -0.8
78,875 + Ac3H11_1260 0.21 +0.6
78,875 + Ac3H11_1260 0.21 -1.4
78,875 + Ac3H11_1260 0.21 +0.0
78,875 + Ac3H11_1260 0.21 +0.9
78,875 + Ac3H11_1260 0.21 +0.7
78,875 + Ac3H11_1260 0.21 +0.4
78,875 + Ac3H11_1260 0.21 +0.2
78,876 - Ac3H11_1260 0.21 -1.3
78,876 - Ac3H11_1260 0.21 -0.4
78,876 - Ac3H11_1260 0.21 -0.0
78,876 - Ac3H11_1260 0.21 -0.4
78,876 - Ac3H11_1260 0.21 -0.0
78,876 - Ac3H11_1260 0.21 +0.3
78,876 - Ac3H11_1260 0.21 -2.1
78,876 - Ac3H11_1260 0.21 +0.4
78,876 - Ac3H11_1260 0.21 -0.3
78,876 - Ac3H11_1260 0.21 -2.5
79,193 + Ac3H11_1260 0.50 +0.1
79,193 + Ac3H11_1260 0.50 +0.9
79,194 - Ac3H11_1260 0.50 -0.0
79,194 - Ac3H11_1260 0.50 +0.7
79,194 - Ac3H11_1260 0.50 -0.7
79,194 - Ac3H11_1260 0.50 -2.1
79,194 - Ac3H11_1260 0.50 -0.6
79,208 + Ac3H11_1260 0.51 -1.8
79,209 - Ac3H11_1260 0.51 -1.0
79,418 + Ac3H11_1260 0.70 -0.3
79,418 + Ac3H11_1260 0.70 +0.5

Or see this region's nucleotide sequence