Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06720

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06715 and AO353_06720 overlap by 4 nucleotidesAO353_06720 and AO353_06725 are separated by 128 nucleotidesAO353_06725 and AO353_06730 overlap by 4 nucleotides AO353_06715: AO353_06715 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 1,494,652 to 1,495,785 _06715 AO353_06720: AO353_06720 - NrdR family transcriptional regulator, at 1,495,782 to 1,496,246 _06720 AO353_06725: AO353_06725 - hypothetical protein, at 1,496,375 to 1,496,836 _06725 AO353_06730: AO353_06730 - methyltransferase, at 1,496,833 to 1,497,489 _06730 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -2 -1 0 1at 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.778 kb on - strandat 1495.778 kb on - strandat 1495.856 kb on - strand, within AO353_06720at 1495.876 kb on + strand, within AO353_06720at 1495.877 kb on - strand, within AO353_06720at 1495.877 kb on - strand, within AO353_06720at 1495.877 kb on - strand, within AO353_06720at 1496.308 kb on + strandat 1496.309 kb on - strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.333 kb on + strandat 1496.333 kb on + strandat 1496.334 kb on - strandat 1496.334 kb on - strandat 1496.334 kb on - strandat 1496.397 kb on + strandat 1496.397 kb on + strandat 1496.397 kb on + strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.428 kb on + strand, within AO353_06725at 1496.428 kb on + strand, within AO353_06725at 1496.428 kb on + strand, within AO353_06725at 1496.429 kb on - strand, within AO353_06725at 1496.528 kb on + strand, within AO353_06725at 1496.864 kb on + strandat 1496.865 kb on - strandat 1497.004 kb on + strand, within AO353_06730at 1497.004 kb on + strand, within AO353_06730at 1497.005 kb on - strand, within AO353_06730at 1497.005 kb on - strand, within AO353_06730at 1497.005 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,495,746 - -0.7
1,495,746 - +0.9
1,495,746 - -0.9
1,495,746 - -0.4
1,495,746 - -0.5
1,495,778 - +0.5
1,495,778 - -0.3
1,495,856 - AO353_06720 0.16 -0.2
1,495,876 + AO353_06720 0.20 -1.8
1,495,877 - AO353_06720 0.20 -0.7
1,495,877 - AO353_06720 0.20 -0.5
1,495,877 - AO353_06720 0.20 +0.4
1,496,308 + +1.2
1,496,309 - -0.4
1,496,322 + -0.5
1,496,322 + -1.9
1,496,322 + +1.3
1,496,322 + +0.7
1,496,322 + +0.8
1,496,323 - -0.5
1,496,323 - -1.1
1,496,323 - -0.5
1,496,323 - -1.5
1,496,323 - +1.5
1,496,323 - -0.2
1,496,323 - -0.4
1,496,323 - -0.1
1,496,323 - -1.6
1,496,323 - +0.2
1,496,333 + -0.0
1,496,333 + +0.7
1,496,334 - +0.4
1,496,334 - +0.2
1,496,334 - +0.6
1,496,397 + +0.5
1,496,397 + -0.8
1,496,397 + +0.3
1,496,398 - +0.3
1,496,398 - +0.3
1,496,398 - +0.8
1,496,398 - -0.8
1,496,398 - +0.5
1,496,428 + AO353_06725 0.11 +0.0
1,496,428 + AO353_06725 0.11 +0.7
1,496,428 + AO353_06725 0.11 +0.1
1,496,429 - AO353_06725 0.12 -1.5
1,496,528 + AO353_06725 0.33 -0.1
1,496,864 + -0.1
1,496,865 - +0.8
1,497,004 + AO353_06730 0.26 -0.4
1,497,004 + AO353_06730 0.26 -0.2
1,497,005 - AO353_06730 0.26 +0.0
1,497,005 - AO353_06730 0.26 +1.0
1,497,005 - AO353_06730 0.26 +0.9
1,497,230 - AO353_06730 0.60 +0.3
1,497,230 - AO353_06730 0.60 +0.8
1,497,230 - AO353_06730 0.60 -0.2
1,497,230 - AO353_06730 0.60 +0.5

Or see this region's nucleotide sequence