Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20345

Experiment: Pimelic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20340 and ABZR87_RS20345 are separated by 183 nucleotidesABZR87_RS20345 and ABZR87_RS20350 are separated by 117 nucleotides ABZR87_RS20340: ABZR87_RS20340 - 5-dehydro-4-deoxyglucarate dehydratase, at 952,713 to 953,651 _RS20340 ABZR87_RS20345: ABZR87_RS20345 - SMP-30/gluconolactonase/LRE family protein, at 953,835 to 954,896 _RS20345 ABZR87_RS20350: ABZR87_RS20350 - LysR substrate-binding domain-containing protein, at 955,014 to 955,910 _RS20350 Position (kb) 953 954 955Strain fitness (log2 ratio) -2 -1 0 1at 952.864 kb on + strand, within ABZR87_RS20340at 952.894 kb on + strand, within ABZR87_RS20340at 952.924 kb on + strand, within ABZR87_RS20340at 952.960 kb on + strand, within ABZR87_RS20340at 952.968 kb on + strand, within ABZR87_RS20340at 952.969 kb on - strand, within ABZR87_RS20340at 953.009 kb on - strand, within ABZR87_RS20340at 953.009 kb on - strand, within ABZR87_RS20340at 953.033 kb on - strand, within ABZR87_RS20340at 953.033 kb on - strand, within ABZR87_RS20340at 953.074 kb on + strand, within ABZR87_RS20340at 953.074 kb on + strand, within ABZR87_RS20340at 953.074 kb on + strand, within ABZR87_RS20340at 953.101 kb on + strand, within ABZR87_RS20340at 953.101 kb on + strand, within ABZR87_RS20340at 953.102 kb on - strand, within ABZR87_RS20340at 953.102 kb on - strand, within ABZR87_RS20340at 953.218 kb on + strand, within ABZR87_RS20340at 953.218 kb on + strand, within ABZR87_RS20340at 953.218 kb on + strand, within ABZR87_RS20340at 953.299 kb on + strand, within ABZR87_RS20340at 953.300 kb on - strand, within ABZR87_RS20340at 953.354 kb on - strand, within ABZR87_RS20340at 953.542 kb on + strand, within ABZR87_RS20340at 953.543 kb on - strand, within ABZR87_RS20340at 953.633 kb on + strandat 953.634 kb on - strandat 953.725 kb on + strandat 953.836 kb on + strandat 953.836 kb on + strandat 953.836 kb on + strandat 953.837 kb on - strandat 953.860 kb on + strandat 953.860 kb on + strandat 953.870 kb on - strandat 953.891 kb on + strandat 953.891 kb on + strandat 953.892 kb on - strandat 953.892 kb on - strandat 953.893 kb on + strandat 953.893 kb on + strandat 953.893 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 953.894 kb on - strandat 954.001 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.155 kb on - strand, within ABZR87_RS20345at 954.155 kb on - strand, within ABZR87_RS20345at 954.155 kb on - strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.200 kb on - strand, within ABZR87_RS20345at 954.200 kb on - strand, within ABZR87_RS20345at 954.200 kb on - strand, within ABZR87_RS20345at 954.434 kb on - strand, within ABZR87_RS20345at 954.434 kb on - strand, within ABZR87_RS20345at 954.537 kb on - strand, within ABZR87_RS20345at 954.537 kb on - strand, within ABZR87_RS20345at 954.550 kb on + strand, within ABZR87_RS20345at 954.598 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.659 kb on - strand, within ABZR87_RS20345at 954.702 kb on + strand, within ABZR87_RS20345at 954.715 kb on + strand, within ABZR87_RS20345at 954.716 kb on - strand, within ABZR87_RS20345at 954.724 kb on + strand, within ABZR87_RS20345at 955.596 kb on + strand, within ABZR87_RS20350at 955.596 kb on + strand, within ABZR87_RS20350at 955.596 kb on + strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.618 kb on - strand, within ABZR87_RS20350at 955.618 kb on - strand, within ABZR87_RS20350at 955.681 kb on - strand, within ABZR87_RS20350at 955.782 kb on + strand, within ABZR87_RS20350at 955.783 kb on - strand, within ABZR87_RS20350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
remove
952,864 + ABZR87_RS20340 0.16 +0.5
952,894 + ABZR87_RS20340 0.19 -0.5
952,924 + ABZR87_RS20340 0.22 -0.2
952,960 + ABZR87_RS20340 0.26 -0.7
952,968 + ABZR87_RS20340 0.27 -0.2
952,969 - ABZR87_RS20340 0.27 -0.1
953,009 - ABZR87_RS20340 0.32 -2.1
953,009 - ABZR87_RS20340 0.32 +0.1
953,033 - ABZR87_RS20340 0.34 -1.5
953,033 - ABZR87_RS20340 0.34 +0.3
953,074 + ABZR87_RS20340 0.38 +0.1
953,074 + ABZR87_RS20340 0.38 +0.4
953,074 + ABZR87_RS20340 0.38 +0.5
953,101 + ABZR87_RS20340 0.41 -1.0
953,101 + ABZR87_RS20340 0.41 +0.3
953,102 - ABZR87_RS20340 0.41 -0.5
953,102 - ABZR87_RS20340 0.41 +0.2
953,218 + ABZR87_RS20340 0.54 +0.1
953,218 + ABZR87_RS20340 0.54 +0.8
953,218 + ABZR87_RS20340 0.54 +0.7
953,299 + ABZR87_RS20340 0.62 +0.4
953,300 - ABZR87_RS20340 0.63 -0.1
953,354 - ABZR87_RS20340 0.68 -0.7
953,542 + ABZR87_RS20340 0.88 +0.3
953,543 - ABZR87_RS20340 0.88 -0.3
953,633 + +0.3
953,634 - +0.7
953,725 + +0.5
953,836 + +0.3
953,836 + +1.2
953,836 + +0.2
953,837 - +0.2
953,860 + -0.7
953,860 + -0.2
953,870 - -0.7
953,891 + +1.3
953,891 + +0.4
953,892 - -0.3
953,892 - +0.0
953,893 + +0.5
953,893 + +0.6
953,893 - +0.1
953,894 - +0.0
953,894 - +0.0
953,894 - -0.0
953,894 - +0.3
953,894 - -0.5
953,894 - -0.5
953,894 - -0.4
953,894 - -0.3
954,001 + ABZR87_RS20345 0.16 -0.4
954,154 + ABZR87_RS20345 0.30 +0.5
954,154 + ABZR87_RS20345 0.30 -0.1
954,154 + ABZR87_RS20345 0.30 +0.8
954,154 + ABZR87_RS20345 0.30 +0.4
954,155 - ABZR87_RS20345 0.30 -0.2
954,155 - ABZR87_RS20345 0.30 +1.0
954,155 - ABZR87_RS20345 0.30 +0.3
954,199 + ABZR87_RS20345 0.34 +0.5
954,199 + ABZR87_RS20345 0.34 +1.1
954,199 + ABZR87_RS20345 0.34 -0.6
954,199 + ABZR87_RS20345 0.34 -0.4
954,200 - ABZR87_RS20345 0.34 +0.2
954,200 - ABZR87_RS20345 0.34 -0.5
954,200 - ABZR87_RS20345 0.34 +0.6
954,434 - ABZR87_RS20345 0.56 +0.4
954,434 - ABZR87_RS20345 0.56 +0.5
954,537 - ABZR87_RS20345 0.66 -0.2
954,537 - ABZR87_RS20345 0.66 +0.7
954,550 + ABZR87_RS20345 0.67 -1.1
954,598 + ABZR87_RS20345 0.72 -0.2
954,640 + ABZR87_RS20345 0.76 +0.8
954,640 + ABZR87_RS20345 0.76 -0.7
954,640 + ABZR87_RS20345 0.76 +1.0
954,640 + ABZR87_RS20345 0.76 -0.1
954,659 - ABZR87_RS20345 0.78 +0.5
954,702 + ABZR87_RS20345 0.82 +0.4
954,715 + ABZR87_RS20345 0.83 -0.5
954,716 - ABZR87_RS20345 0.83 +0.3
954,724 + ABZR87_RS20345 0.84 -0.6
955,596 + ABZR87_RS20350 0.65 +1.4
955,596 + ABZR87_RS20350 0.65 -0.3
955,596 + ABZR87_RS20350 0.65 -0.5
955,597 - ABZR87_RS20350 0.65 -1.7
955,597 - ABZR87_RS20350 0.65 -0.4
955,597 - ABZR87_RS20350 0.65 -0.3
955,597 - ABZR87_RS20350 0.65 +0.0
955,618 - ABZR87_RS20350 0.67 +0.3
955,618 - ABZR87_RS20350 0.67 +0.1
955,681 - ABZR87_RS20350 0.74 -0.7
955,782 + ABZR87_RS20350 0.86 +0.6
955,783 - ABZR87_RS20350 0.86 -0.6

Or see this region's nucleotide sequence