Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17560

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17555 and ABZR87_RS17560 are separated by 150 nucleotidesABZR87_RS17560 and ABZR87_RS17565 overlap by 17 nucleotidesABZR87_RS17565 and ABZR87_RS17570 are separated by 95 nucleotides ABZR87_RS17555: ABZR87_RS17555 - amidohydrolase family protein, at 300,568 to 301,500 _RS17555 ABZR87_RS17560: ABZR87_RS17560 - ABC transporter substrate-binding protein, at 301,651 to 302,859 _RS17560 ABZR87_RS17565: ABZR87_RS17565 - helix-turn-helix transcriptional regulator, at 302,843 to 303,646 _RS17565 ABZR87_RS17570: ABZR87_RS17570 - hypothetical protein, at 303,742 to 304,038 _RS17570 Position (kb) 301 302 303Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 300.730 kb on + strand, within ABZR87_RS17555at 300.730 kb on + strand, within ABZR87_RS17555at 300.730 kb on + strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.796 kb on + strand, within ABZR87_RS17555at 300.797 kb on - strand, within ABZR87_RS17555at 300.797 kb on - strand, within ABZR87_RS17555at 300.856 kb on + strand, within ABZR87_RS17555at 300.933 kb on + strand, within ABZR87_RS17555at 300.934 kb on - strand, within ABZR87_RS17555at 301.088 kb on + strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.261 kb on + strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.389 kb on + strand, within ABZR87_RS17555at 301.389 kb on + strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.486 kb on + strandat 301.487 kb on - strandat 301.768 kb on + strandat 301.768 kb on + strandat 301.768 kb on + strandat 301.769 kb on - strandat 302.011 kb on + strand, within ABZR87_RS17560at 302.011 kb on + strand, within ABZR87_RS17560at 302.011 kb on + strand, within ABZR87_RS17560at 302.012 kb on - strand, within ABZR87_RS17560at 302.084 kb on - strand, within ABZR87_RS17560at 302.084 kb on - strand, within ABZR87_RS17560at 302.112 kb on + strand, within ABZR87_RS17560at 302.149 kb on + strand, within ABZR87_RS17560at 302.149 kb on + strand, within ABZR87_RS17560at 302.150 kb on - strand, within ABZR87_RS17560at 302.150 kb on - strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.168 kb on - strand, within ABZR87_RS17560at 302.278 kb on + strand, within ABZR87_RS17560at 302.279 kb on - strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.524 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.569 kb on + strand, within ABZR87_RS17560at 302.570 kb on - strand, within ABZR87_RS17560at 302.587 kb on + strand, within ABZR87_RS17560at 302.587 kb on + strand, within ABZR87_RS17560at 302.588 kb on - strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.671 kb on + strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.672 kb on - strand, within ABZR87_RS17560at 302.722 kb on + strand, within ABZR87_RS17560at 302.722 kb on + strand, within ABZR87_RS17560at 302.723 kb on - strand, within ABZR87_RS17560at 302.771 kb on - strandat 302.773 kb on + strandat 302.773 kb on + strandat 302.774 kb on - strandat 302.774 kb on - strandat 302.814 kb on + strandat 302.815 kb on - strandat 303.128 kb on - strand, within ABZR87_RS17565at 303.145 kb on + strand, within ABZR87_RS17565at 303.146 kb on - strand, within ABZR87_RS17565at 303.378 kb on + strand, within ABZR87_RS17565at 303.379 kb on - strand, within ABZR87_RS17565at 303.426 kb on - strand, within ABZR87_RS17565at 303.585 kb on + strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.704 kb on + strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strandat 303.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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300,730 + ABZR87_RS17555 0.17 -0.5
300,730 + ABZR87_RS17555 0.17 +0.7
300,730 + ABZR87_RS17555 0.17 -0.2
300,731 - ABZR87_RS17555 0.17 -0.2
300,731 - ABZR87_RS17555 0.17 +0.6
300,731 - ABZR87_RS17555 0.17 -0.5
300,796 + ABZR87_RS17555 0.24 +0.1
300,797 - ABZR87_RS17555 0.25 -0.6
300,797 - ABZR87_RS17555 0.25 -1.3
300,856 + ABZR87_RS17555 0.31 -0.3
300,933 + ABZR87_RS17555 0.39 +0.3
300,934 - ABZR87_RS17555 0.39 -0.1
301,088 + ABZR87_RS17555 0.56 +0.0
301,089 - ABZR87_RS17555 0.56 +0.3
301,089 - ABZR87_RS17555 0.56 -0.2
301,089 - ABZR87_RS17555 0.56 -0.1
301,089 - ABZR87_RS17555 0.56 +0.4
301,261 + ABZR87_RS17555 0.74 +1.1
301,262 - ABZR87_RS17555 0.74 +0.6
301,262 - ABZR87_RS17555 0.74 -0.6
301,262 - ABZR87_RS17555 0.74 +0.3
301,262 - ABZR87_RS17555 0.74 -1.5
301,292 - ABZR87_RS17555 0.78 -0.1
301,292 - ABZR87_RS17555 0.78 +0.0
301,292 - ABZR87_RS17555 0.78 -0.4
301,389 + ABZR87_RS17555 0.88 -0.5
301,389 + ABZR87_RS17555 0.88 +0.1
301,390 - ABZR87_RS17555 0.88 +0.7
301,390 - ABZR87_RS17555 0.88 +0.1
301,390 - ABZR87_RS17555 0.88 -1.7
301,390 - ABZR87_RS17555 0.88 -0.3
301,390 - ABZR87_RS17555 0.88 -0.6
301,486 + +0.2
301,487 - -0.1
301,768 + -0.1
301,768 + -1.1
301,768 + +0.5
301,769 - -0.8
302,011 + ABZR87_RS17560 0.30 -0.3
302,011 + ABZR87_RS17560 0.30 -0.6
302,011 + ABZR87_RS17560 0.30 -0.9
302,012 - ABZR87_RS17560 0.30 -0.5
302,084 - ABZR87_RS17560 0.36 -1.2
302,084 - ABZR87_RS17560 0.36 -1.6
302,112 + ABZR87_RS17560 0.38 +0.7
302,149 + ABZR87_RS17560 0.41 -1.0
302,149 + ABZR87_RS17560 0.41 -0.6
302,150 - ABZR87_RS17560 0.41 -1.3
302,150 - ABZR87_RS17560 0.41 -2.2
302,167 + ABZR87_RS17560 0.43 -1.0
302,167 + ABZR87_RS17560 0.43 -0.7
302,167 + ABZR87_RS17560 0.43 +0.3
302,167 + ABZR87_RS17560 0.43 -0.8
302,168 - ABZR87_RS17560 0.43 -0.9
302,278 + ABZR87_RS17560 0.52 -0.4
302,279 - ABZR87_RS17560 0.52 -0.7
302,524 + ABZR87_RS17560 0.72 -0.6
302,524 + ABZR87_RS17560 0.72 -0.3
302,524 + ABZR87_RS17560 0.72 -2.2
302,524 + ABZR87_RS17560 0.72 -0.8
302,524 + ABZR87_RS17560 0.72 -1.5
302,569 + ABZR87_RS17560 0.76 -1.3
302,569 + ABZR87_RS17560 0.76 -0.4
302,569 + ABZR87_RS17560 0.76 -0.5
302,569 + ABZR87_RS17560 0.76 -0.9
302,570 - ABZR87_RS17560 0.76 -0.5
302,587 + ABZR87_RS17560 0.77 -1.5
302,587 + ABZR87_RS17560 0.77 -0.3
302,588 - ABZR87_RS17560 0.78 -1.2
302,671 + ABZR87_RS17560 0.84 -0.5
302,671 + ABZR87_RS17560 0.84 +0.8
302,671 + ABZR87_RS17560 0.84 -0.9
302,671 + ABZR87_RS17560 0.84 -1.9
302,672 - ABZR87_RS17560 0.84 -1.5
302,672 - ABZR87_RS17560 0.84 -1.3
302,672 - ABZR87_RS17560 0.84 +1.5
302,672 - ABZR87_RS17560 0.84 -3.5
302,672 - ABZR87_RS17560 0.84 +0.7
302,672 - ABZR87_RS17560 0.84 -1.3
302,672 - ABZR87_RS17560 0.84 -0.5
302,722 + ABZR87_RS17560 0.89 -0.9
302,722 + ABZR87_RS17560 0.89 -1.3
302,723 - ABZR87_RS17560 0.89 -1.1
302,771 - -0.7
302,773 + -0.2
302,773 + -0.9
302,774 - -0.9
302,774 - -1.2
302,814 + -0.3
302,815 - -0.3
303,128 - ABZR87_RS17565 0.35 -3.8
303,145 + ABZR87_RS17565 0.38 -0.7
303,146 - ABZR87_RS17565 0.38 +0.1
303,378 + ABZR87_RS17565 0.67 +0.6
303,379 - ABZR87_RS17565 0.67 +1.9
303,426 - ABZR87_RS17565 0.73 -0.4
303,585 + -0.1
303,586 - -0.3
303,586 - +0.3
303,586 - +0.0
303,586 - +0.8
303,586 - +0.1
303,704 + -0.1
303,704 + -0.0
303,704 + +0.7
303,704 + +0.6
303,704 + -0.1
303,704 + -0.1
303,704 + -0.5
303,705 - -0.9
303,705 - +0.4
303,705 - -1.2
303,705 - -0.0
303,705 - +0.3
303,705 - -0.1
303,705 - -0.2
303,705 - +0.8

Or see this region's nucleotide sequence