Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17470 and ABZR87_RS17475 are separated by 19 nucleotides ABZR87_RS17475 and ABZR87_RS17480 overlap by 1 nucleotides ABZR87_RS17480 and ABZR87_RS17485 overlap by 4 nucleotides
ABZR87_RS17470: ABZR87_RS17470 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 279,020 to 280,567
_RS17470
ABZR87_RS17475: ABZR87_RS17475 - 3-hydroxyisobutyrate dehydrogenase, at 280,587 to 281,480
_RS17475
ABZR87_RS17480: ABZR87_RS17480 - enoyl-CoA hydratase, at 281,480 to 282,277
_RS17480
ABZR87_RS17485: ABZR87_RS17485 - enoyl-CoA hydratase/isomerase family protein, at 282,274 to 283,425
_RS17485
Position (kb) 280
281
282 Strain fitness (log2 ratio) -1
0
1
2 at 279.773 kb on + strand, within ABZR87_RS17470 at 279.773 kb on + strand, within ABZR87_RS17470 at 279.773 kb on + strand, within ABZR87_RS17470 at 279.774 kb on - strand, within ABZR87_RS17470 at 279.774 kb on - strand, within ABZR87_RS17470 at 280.200 kb on - strand, within ABZR87_RS17470 at 280.205 kb on + strand, within ABZR87_RS17470 at 280.205 kb on + strand, within ABZR87_RS17470 at 280.205 kb on + strand, within ABZR87_RS17470 at 280.205 kb on + strand, within ABZR87_RS17470 at 280.206 kb on - strand, within ABZR87_RS17470 at 280.206 kb on - strand, within ABZR87_RS17470 at 280.252 kb on + strand, within ABZR87_RS17470 at 280.406 kb on + strand, within ABZR87_RS17470 at 280.481 kb on + strand at 280.547 kb on - strand at 280.683 kb on - strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.795 kb on + strand, within ABZR87_RS17475 at 280.796 kb on - strand, within ABZR87_RS17475 at 281.239 kb on - strand, within ABZR87_RS17475 at 281.239 kb on - strand, within ABZR87_RS17475 at 281.239 kb on - strand, within ABZR87_RS17475 at 281.286 kb on + strand, within ABZR87_RS17475 at 281.370 kb on + strand, within ABZR87_RS17475 at 281.370 kb on + strand, within ABZR87_RS17475 at 281.458 kb on - strand at 282.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 279,773 + ABZR87_RS17470 0.49 +0.4 279,773 + ABZR87_RS17470 0.49 +0.3 279,773 + ABZR87_RS17470 0.49 -0.1 279,774 - ABZR87_RS17470 0.49 -0.1 279,774 - ABZR87_RS17470 0.49 +0.9 280,200 - ABZR87_RS17470 0.76 +0.5 280,205 + ABZR87_RS17470 0.77 +1.8 280,205 + ABZR87_RS17470 0.77 +0.1 280,205 + ABZR87_RS17470 0.77 -0.2 280,205 + ABZR87_RS17470 0.77 -0.4 280,206 - ABZR87_RS17470 0.77 -0.5 280,206 - ABZR87_RS17470 0.77 -1.5 280,252 + ABZR87_RS17470 0.80 -1.0 280,406 + ABZR87_RS17470 0.90 -0.7 280,481 + +0.0 280,547 - -0.1 280,683 - ABZR87_RS17475 0.11 +0.3 280,795 + ABZR87_RS17475 0.23 +0.6 280,795 + ABZR87_RS17475 0.23 -0.1 280,795 + ABZR87_RS17475 0.23 +0.4 280,795 + ABZR87_RS17475 0.23 -0.1 280,795 + ABZR87_RS17475 0.23 +0.3 280,795 + ABZR87_RS17475 0.23 +0.8 280,795 + ABZR87_RS17475 0.23 -0.5 280,796 - ABZR87_RS17475 0.23 -0.5 281,239 - ABZR87_RS17475 0.73 -0.5 281,239 - ABZR87_RS17475 0.73 -1.0 281,239 - ABZR87_RS17475 0.73 -0.7 281,286 + ABZR87_RS17475 0.78 -0.8 281,370 + ABZR87_RS17475 0.88 -0.1 281,370 + ABZR87_RS17475 0.88 -1.1 281,458 - +0.2 282,366 + -0.6
Or see this region's nucleotide sequence