Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17040

Experiment: Pimelic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17035 and ABZR87_RS17040 are separated by 456 nucleotidesABZR87_RS17040 and ABZR87_RS17045 are separated by 20 nucleotides ABZR87_RS17035: ABZR87_RS17035 - spherulation-specific family 4 protein, at 172,876 to 173,730 _RS17035 ABZR87_RS17040: ABZR87_RS17040 - hypothetical protein, at 174,187 to 174,642 _RS17040 ABZR87_RS17045: ABZR87_RS17045 - LysR family transcriptional regulator, at 174,663 to 175,556 _RS17045 Position (kb) 174 175Strain fitness (log2 ratio) -1 0 1 2 3at 173.198 kb on + strand, within ABZR87_RS17035at 173.198 kb on + strand, within ABZR87_RS17035at 173.198 kb on + strand, within ABZR87_RS17035at 173.199 kb on - strand, within ABZR87_RS17035at 173.199 kb on - strand, within ABZR87_RS17035at 173.199 kb on - strand, within ABZR87_RS17035at 173.199 kb on - strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.222 kb on + strand, within ABZR87_RS17035at 173.223 kb on - strand, within ABZR87_RS17035at 173.223 kb on - strand, within ABZR87_RS17035at 173.223 kb on - strand, within ABZR87_RS17035at 173.223 kb on - strand, within ABZR87_RS17035at 173.223 kb on - strand, within ABZR87_RS17035at 173.223 kb on - strand, within ABZR87_RS17035at 173.228 kb on + strand, within ABZR87_RS17035at 173.240 kb on + strand, within ABZR87_RS17035at 173.240 kb on + strand, within ABZR87_RS17035at 173.240 kb on + strand, within ABZR87_RS17035at 173.240 kb on + strand, within ABZR87_RS17035at 173.306 kb on + strand, within ABZR87_RS17035at 173.306 kb on + strand, within ABZR87_RS17035at 173.307 kb on - strand, within ABZR87_RS17035at 173.318 kb on + strand, within ABZR87_RS17035at 173.318 kb on + strand, within ABZR87_RS17035at 173.318 kb on + strand, within ABZR87_RS17035at 173.364 kb on - strand, within ABZR87_RS17035at 173.379 kb on - strand, within ABZR87_RS17035at 173.379 kb on - strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.429 kb on + strand, within ABZR87_RS17035at 173.430 kb on - strand, within ABZR87_RS17035at 173.430 kb on - strand, within ABZR87_RS17035at 173.430 kb on - strand, within ABZR87_RS17035at 173.430 kb on - strand, within ABZR87_RS17035at 173.430 kb on - strand, within ABZR87_RS17035at 173.430 kb on - strand, within ABZR87_RS17035at 173.546 kb on + strand, within ABZR87_RS17035at 173.547 kb on - strand, within ABZR87_RS17035at 173.547 kb on - strand, within ABZR87_RS17035at 173.547 kb on - strand, within ABZR87_RS17035at 173.552 kb on + strand, within ABZR87_RS17035at 173.552 kb on + strand, within ABZR87_RS17035at 173.552 kb on + strand, within ABZR87_RS17035at 173.552 kb on + strand, within ABZR87_RS17035at 173.552 kb on + strand, within ABZR87_RS17035at 173.552 kb on + strand, within ABZR87_RS17035at 173.553 kb on - strand, within ABZR87_RS17035at 173.553 kb on - strand, within ABZR87_RS17035at 173.553 kb on - strand, within ABZR87_RS17035at 173.553 kb on - strand, within ABZR87_RS17035at 173.553 kb on - strand, within ABZR87_RS17035at 173.631 kb on - strand, within ABZR87_RS17035at 173.828 kb on + strandat 173.828 kb on + strandat 173.828 kb on + strandat 173.828 kb on + strandat 173.828 kb on + strandat 173.829 kb on - strandat 173.830 kb on + strandat 173.830 kb on + strandat 173.830 kb on + strandat 173.831 kb on - strandat 173.831 kb on - strandat 173.831 kb on - strandat 173.831 kb on - strandat 174.164 kb on + strandat 174.164 kb on + strandat 174.164 kb on + strandat 174.164 kb on + strandat 174.165 kb on - strandat 174.165 kb on - strandat 174.165 kb on - strandat 174.326 kb on - strand, within ABZR87_RS17040at 174.326 kb on - strand, within ABZR87_RS17040at 174.358 kb on + strand, within ABZR87_RS17040at 174.358 kb on + strand, within ABZR87_RS17040at 174.359 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.589 kb on + strand, within ABZR87_RS17040at 174.589 kb on + strand, within ABZR87_RS17040at 174.590 kb on - strand, within ABZR87_RS17040at 175.042 kb on + strand, within ABZR87_RS17045at 175.043 kb on - strand, within ABZR87_RS17045at 175.043 kb on - strand, within ABZR87_RS17045at 175.061 kb on + strand, within ABZR87_RS17045at 175.062 kb on - strand, within ABZR87_RS17045at 175.149 kb on - strand, within ABZR87_RS17045at 175.237 kb on + strand, within ABZR87_RS17045at 175.550 kb on + strandat 175.560 kb on + strandat 175.594 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
remove
173,198 + ABZR87_RS17035 0.38 -0.3
173,198 + ABZR87_RS17035 0.38 -1.0
173,198 + ABZR87_RS17035 0.38 +0.6
173,199 - ABZR87_RS17035 0.38 +0.1
173,199 - ABZR87_RS17035 0.38 +0.0
173,199 - ABZR87_RS17035 0.38 -0.2
173,199 - ABZR87_RS17035 0.38 -0.3
173,222 + ABZR87_RS17035 0.40 -0.2
173,222 + ABZR87_RS17035 0.40 +0.3
173,222 + ABZR87_RS17035 0.40 +0.0
173,222 + ABZR87_RS17035 0.40 -0.0
173,222 + ABZR87_RS17035 0.40 +0.1
173,222 + ABZR87_RS17035 0.40 +0.4
173,222 + ABZR87_RS17035 0.40 +0.4
173,223 - ABZR87_RS17035 0.41 +0.5
173,223 - ABZR87_RS17035 0.41 -0.1
173,223 - ABZR87_RS17035 0.41 +0.1
173,223 - ABZR87_RS17035 0.41 -0.3
173,223 - ABZR87_RS17035 0.41 -0.4
173,223 - ABZR87_RS17035 0.41 -0.6
173,228 + ABZR87_RS17035 0.41 -0.9
173,240 + ABZR87_RS17035 0.43 +0.4
173,240 + ABZR87_RS17035 0.43 +0.0
173,240 + ABZR87_RS17035 0.43 -1.3
173,240 + ABZR87_RS17035 0.43 -0.3
173,306 + ABZR87_RS17035 0.50 +0.7
173,306 + ABZR87_RS17035 0.50 -0.4
173,307 - ABZR87_RS17035 0.50 +0.2
173,318 + ABZR87_RS17035 0.52 +0.8
173,318 + ABZR87_RS17035 0.52 +1.6
173,318 + ABZR87_RS17035 0.52 -0.2
173,364 - ABZR87_RS17035 0.57 +0.5
173,379 - ABZR87_RS17035 0.59 +0.1
173,379 - ABZR87_RS17035 0.59 -0.4
173,429 + ABZR87_RS17035 0.65 +0.5
173,429 + ABZR87_RS17035 0.65 +0.5
173,429 + ABZR87_RS17035 0.65 +0.4
173,429 + ABZR87_RS17035 0.65 +0.3
173,429 + ABZR87_RS17035 0.65 -0.6
173,429 + ABZR87_RS17035 0.65 -0.2
173,429 + ABZR87_RS17035 0.65 -0.1
173,429 + ABZR87_RS17035 0.65 -0.2
173,429 + ABZR87_RS17035 0.65 +0.8
173,429 + ABZR87_RS17035 0.65 +0.4
173,430 - ABZR87_RS17035 0.65 -0.3
173,430 - ABZR87_RS17035 0.65 -0.2
173,430 - ABZR87_RS17035 0.65 +0.3
173,430 - ABZR87_RS17035 0.65 -0.5
173,430 - ABZR87_RS17035 0.65 -0.0
173,430 - ABZR87_RS17035 0.65 +0.1
173,546 + ABZR87_RS17035 0.78 -0.1
173,547 - ABZR87_RS17035 0.78 +0.1
173,547 - ABZR87_RS17035 0.78 -0.4
173,547 - ABZR87_RS17035 0.78 -0.3
173,552 + ABZR87_RS17035 0.79 -0.1
173,552 + ABZR87_RS17035 0.79 -0.6
173,552 + ABZR87_RS17035 0.79 +0.6
173,552 + ABZR87_RS17035 0.79 -0.8
173,552 + ABZR87_RS17035 0.79 +0.0
173,552 + ABZR87_RS17035 0.79 +1.6
173,553 - ABZR87_RS17035 0.79 +0.1
173,553 - ABZR87_RS17035 0.79 +0.3
173,553 - ABZR87_RS17035 0.79 -0.3
173,553 - ABZR87_RS17035 0.79 -0.0
173,553 - ABZR87_RS17035 0.79 -0.3
173,631 - ABZR87_RS17035 0.88 +1.2
173,828 + +0.0
173,828 + +0.1
173,828 + +0.7
173,828 + +1.0
173,828 + +0.6
173,829 - +0.2
173,830 + +0.5
173,830 + +0.3
173,830 + -0.3
173,831 - +1.3
173,831 - -0.1
173,831 - -0.3
173,831 - -0.1
174,164 + -1.0
174,164 + -0.7
174,164 + -1.1
174,164 + +0.6
174,165 - +0.2
174,165 - -0.0
174,165 - +0.6
174,326 - ABZR87_RS17040 0.30 -0.7
174,326 - ABZR87_RS17040 0.30 +0.6
174,358 + ABZR87_RS17040 0.38 +0.4
174,358 + ABZR87_RS17040 0.38 +0.2
174,359 - ABZR87_RS17040 0.38 +1.6
174,410 - ABZR87_RS17040 0.49 +1.4
174,410 - ABZR87_RS17040 0.49 +0.1
174,410 - ABZR87_RS17040 0.49 -0.1
174,410 - ABZR87_RS17040 0.49 +0.3
174,410 - ABZR87_RS17040 0.49 +0.3
174,469 + ABZR87_RS17040 0.62 -0.2
174,469 + ABZR87_RS17040 0.62 +0.2
174,469 + ABZR87_RS17040 0.62 -0.1
174,469 + ABZR87_RS17040 0.62 -0.3
174,469 + ABZR87_RS17040 0.62 +1.0
174,470 - ABZR87_RS17040 0.62 +1.0
174,470 - ABZR87_RS17040 0.62 +1.3
174,470 - ABZR87_RS17040 0.62 +0.3
174,470 - ABZR87_RS17040 0.62 +0.3
174,589 + ABZR87_RS17040 0.88 +0.3
174,589 + ABZR87_RS17040 0.88 +1.0
174,590 - ABZR87_RS17040 0.88 -0.4
175,042 + ABZR87_RS17045 0.42 +0.1
175,043 - ABZR87_RS17045 0.43 -0.2
175,043 - ABZR87_RS17045 0.43 +0.4
175,061 + ABZR87_RS17045 0.45 +3.3
175,062 - ABZR87_RS17045 0.45 -0.3
175,149 - ABZR87_RS17045 0.54 +1.0
175,237 + ABZR87_RS17045 0.64 +0.1
175,550 + +0.6
175,560 + +0.6
175,594 - +0.0

Or see this region's nucleotide sequence