Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04435 and ABZR87_RS04440 are separated by 399 nucleotides ABZR87_RS04440 and ABZR87_RS04445 overlap by 7 nucleotides ABZR87_RS04445 and ABZR87_RS04450 are separated by 5 nucleotides ABZR87_RS04450 and ABZR87_RS04455 are separated by 169 nucleotides
ABZR87_RS04435: ABZR87_RS04435 - lysozyme inhibitor LprI family protein, at 929,393 to 929,854
_RS04435
ABZR87_RS04440: ABZR87_RS04440 - metalloregulator ArsR/SmtB family transcription factor, at 930,254 to 930,574
_RS04440
ABZR87_RS04445: ABZR87_RS04445 - arsenate reductase ArsC, at 930,568 to 931,086
_RS04445
ABZR87_RS04450: ABZR87_RS04450 - MIP/aquaporin family protein, at 931,092 to 931,799
_RS04450
ABZR87_RS04455: ABZR87_RS04455 - alpha/beta hydrolase, at 931,969 to 932,877
_RS04455
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 929.609 kb on + strand, within ABZR87_RS04435 at 929.618 kb on + strand, within ABZR87_RS04435 at 929.618 kb on + strand, within ABZR87_RS04435 at 929.618 kb on + strand, within ABZR87_RS04435 at 929.643 kb on - strand, within ABZR87_RS04435 at 929.643 kb on - strand, within ABZR87_RS04435 at 929.840 kb on + strand at 929.840 kb on + strand at 929.841 kb on - strand at 929.841 kb on - strand at 929.844 kb on - strand at 929.844 kb on - strand at 929.844 kb on - strand at 929.852 kb on + strand at 929.853 kb on - strand at 929.903 kb on + strand at 929.903 kb on + strand at 929.903 kb on + strand at 929.903 kb on + strand at 929.904 kb on - strand at 929.960 kb on + strand at 929.960 kb on + strand at 929.960 kb on + strand at 929.960 kb on + strand at 929.961 kb on - strand at 929.961 kb on - strand at 929.961 kb on - strand at 930.081 kb on + strand at 930.094 kb on + strand at 930.094 kb on + strand at 930.095 kb on - strand at 930.095 kb on - strand at 930.095 kb on - strand at 930.108 kb on + strand at 930.109 kb on - strand at 930.111 kb on + strand at 930.111 kb on + strand at 930.112 kb on - strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.125 kb on + strand at 930.125 kb on + strand at 930.125 kb on + strand at 930.125 kb on + strand at 930.126 kb on - strand at 930.126 kb on - strand at 930.126 kb on - strand at 930.126 kb on - strand at 930.129 kb on + strand at 930.129 kb on + strand at 930.129 kb on + strand at 930.129 kb on + strand at 930.130 kb on - strand at 930.130 kb on - strand at 930.130 kb on - strand at 930.130 kb on - strand at 930.137 kb on + strand at 930.137 kb on + strand at 930.138 kb on - strand at 930.143 kb on + strand at 930.143 kb on + strand at 930.143 kb on + strand at 930.143 kb on + strand at 930.144 kb on - strand at 930.144 kb on - strand at 930.146 kb on - strand at 930.233 kb on + strand at 930.233 kb on + strand at 930.234 kb on - strand at 930.242 kb on + strand at 930.242 kb on + strand at 930.242 kb on + strand at 930.243 kb on - strand at 930.243 kb on - strand at 930.243 kb on - strand at 930.243 kb on - strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.254 kb on - strand at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.483 kb on - strand, within ABZR87_RS04440 at 930.483 kb on - strand, within ABZR87_RS04440 at 930.684 kb on + strand, within ABZR87_RS04445 at 930.685 kb on - strand, within ABZR87_RS04445 at 930.685 kb on - strand, within ABZR87_RS04445 at 930.700 kb on + strand, within ABZR87_RS04445 at 930.701 kb on - strand, within ABZR87_RS04445 at 930.701 kb on - strand, within ABZR87_RS04445 at 930.792 kb on + strand, within ABZR87_RS04445 at 930.792 kb on + strand, within ABZR87_RS04445 at 930.793 kb on - strand, within ABZR87_RS04445 at 930.793 kb on - strand, within ABZR87_RS04445 at 930.793 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 931.141 kb on + strand at 931.142 kb on - strand at 931.248 kb on + strand, within ABZR87_RS04450 at 931.248 kb on + strand, within ABZR87_RS04450 at 931.248 kb on + strand, within ABZR87_RS04450 at 931.249 kb on - strand, within ABZR87_RS04450 at 931.249 kb on - strand, within ABZR87_RS04450 at 931.249 kb on - strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.313 kb on - strand, within ABZR87_RS04450 at 931.313 kb on - strand, within ABZR87_RS04450 at 931.313 kb on - strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.554 kb on + strand, within ABZR87_RS04450 at 931.554 kb on + strand, within ABZR87_RS04450 at 931.570 kb on - strand, within ABZR87_RS04450 at 931.797 kb on + strand at 931.798 kb on - strand at 931.858 kb on + strand at 931.858 kb on + strand at 931.858 kb on + strand at 931.859 kb on - strand at 931.861 kb on + strand at 931.861 kb on + strand at 931.862 kb on - strand at 931.862 kb on - strand at 931.862 kb on - strand at 931.862 kb on - strand at 931.894 kb on + strand at 931.894 kb on + strand at 931.895 kb on - strand at 931.901 kb on + strand at 931.901 kb on + strand at 931.901 kb on + strand at 931.901 kb on + strand at 931.902 kb on - strand at 931.902 kb on - strand at 932.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 929,609 + ABZR87_RS04435 0.47 -0.8 929,618 + ABZR87_RS04435 0.49 -0.1 929,618 + ABZR87_RS04435 0.49 -0.4 929,618 + ABZR87_RS04435 0.49 +0.1 929,643 - ABZR87_RS04435 0.54 -0.2 929,643 - ABZR87_RS04435 0.54 +0.9 929,840 + -0.2 929,840 + +0.2 929,841 - -0.6 929,841 - -0.0 929,844 - +0.9 929,844 - +0.7 929,844 - +0.6 929,852 + -0.2 929,853 - +0.8 929,903 + -0.5 929,903 + -1.5 929,903 + +1.0 929,903 + -0.6 929,904 - +1.4 929,960 + -0.8 929,960 + -0.1 929,960 + +0.5 929,960 + +0.1 929,961 - -1.1 929,961 - +1.2 929,961 - -0.3 930,081 + -3.0 930,094 + -0.1 930,094 + -1.2 930,095 - +1.1 930,095 - -0.7 930,095 - -0.5 930,108 + +0.2 930,109 - -0.4 930,111 + +0.8 930,111 + -0.9 930,112 - +0.7 930,114 + -0.5 930,114 + -0.5 930,114 + +0.4 930,114 + -1.0 930,114 + +0.3 930,115 - -0.1 930,115 - -0.2 930,115 - -0.9 930,115 - +0.3 930,115 - +1.2 930,117 + +0.1 930,117 + +0.2 930,117 + +0.2 930,117 + -0.0 930,117 + -0.3 930,117 + -0.5 930,117 + -0.9 930,118 - +0.5 930,118 - -0.2 930,118 - -0.6 930,118 - -1.2 930,118 - -0.9 930,118 - -0.3 930,118 - -0.3 930,118 - -0.3 930,118 - -0.2 930,118 - -1.1 930,125 + -0.4 930,125 + -0.8 930,125 + -0.5 930,125 + +0.2 930,126 - +0.1 930,126 - -0.5 930,126 - +0.3 930,126 - -0.3 930,129 + +0.3 930,129 + +0.4 930,129 + -0.9 930,129 + +0.1 930,130 - +0.3 930,130 - -1.1 930,130 - +0.5 930,130 - +0.5 930,137 + +0.1 930,137 + +0.1 930,138 - -0.7 930,143 + +2.1 930,143 + +0.7 930,143 + +0.4 930,143 + -1.2 930,144 - -0.1 930,144 - -0.2 930,146 - -0.5 930,233 + -0.5 930,233 + +0.2 930,234 - +0.0 930,242 + +0.0 930,242 + -1.2 930,242 + -0.4 930,243 - -0.3 930,243 - +1.0 930,243 - -0.9 930,243 - +0.6 930,253 + -0.5 930,253 + -0.1 930,253 + -0.1 930,253 + +0.5 930,253 + -0.4 930,254 - -0.1 930,465 + ABZR87_RS04440 0.66 -0.0 930,465 + ABZR87_RS04440 0.66 +0.1 930,465 + ABZR87_RS04440 0.66 +0.9 930,465 + ABZR87_RS04440 0.66 -0.3 930,465 + ABZR87_RS04440 0.66 -0.0 930,466 - ABZR87_RS04440 0.66 +0.4 930,466 - ABZR87_RS04440 0.66 +0.0 930,466 - ABZR87_RS04440 0.66 +0.4 930,466 - ABZR87_RS04440 0.66 +0.2 930,466 - ABZR87_RS04440 0.66 -1.0 930,466 - ABZR87_RS04440 0.66 +1.2 930,483 - ABZR87_RS04440 0.71 +0.0 930,483 - ABZR87_RS04440 0.71 -0.1 930,684 + ABZR87_RS04445 0.22 -0.9 930,685 - ABZR87_RS04445 0.23 -0.7 930,685 - ABZR87_RS04445 0.23 +0.0 930,700 + ABZR87_RS04445 0.25 -0.3 930,701 - ABZR87_RS04445 0.26 +0.4 930,701 - ABZR87_RS04445 0.26 +0.5 930,792 + ABZR87_RS04445 0.43 +0.7 930,792 + ABZR87_RS04445 0.43 -0.2 930,793 - ABZR87_RS04445 0.43 +0.1 930,793 - ABZR87_RS04445 0.43 -0.5 930,793 - ABZR87_RS04445 0.43 -1.0 930,852 - ABZR87_RS04445 0.55 -0.5 930,852 - ABZR87_RS04445 0.55 -0.0 930,852 - ABZR87_RS04445 0.55 -0.7 930,852 - ABZR87_RS04445 0.55 -1.1 931,141 + +0.4 931,142 - +1.3 931,248 + ABZR87_RS04450 0.22 +0.6 931,248 + ABZR87_RS04450 0.22 +0.8 931,248 + ABZR87_RS04450 0.22 -0.5 931,249 - ABZR87_RS04450 0.22 -0.2 931,249 - ABZR87_RS04450 0.22 -0.0 931,249 - ABZR87_RS04450 0.22 +0.5 931,312 + ABZR87_RS04450 0.31 -0.4 931,312 + ABZR87_RS04450 0.31 +0.0 931,312 + ABZR87_RS04450 0.31 +0.3 931,312 + ABZR87_RS04450 0.31 +0.1 931,313 - ABZR87_RS04450 0.31 -1.0 931,313 - ABZR87_RS04450 0.31 -0.2 931,313 - ABZR87_RS04450 0.31 -0.0 931,356 + ABZR87_RS04450 0.37 +0.0 931,356 + ABZR87_RS04450 0.37 -0.1 931,356 + ABZR87_RS04450 0.37 -0.2 931,356 + ABZR87_RS04450 0.37 +0.7 931,357 - ABZR87_RS04450 0.37 +0.7 931,357 - ABZR87_RS04450 0.37 -0.7 931,357 - ABZR87_RS04450 0.37 +1.3 931,357 - ABZR87_RS04450 0.37 +0.7 931,554 + ABZR87_RS04450 0.65 +0.5 931,554 + ABZR87_RS04450 0.65 -0.4 931,570 - ABZR87_RS04450 0.68 -1.4 931,797 + +0.2 931,798 - -0.3 931,858 + +0.5 931,858 + +0.2 931,858 + +0.1 931,859 - +0.2 931,861 + -0.6 931,861 + +0.0 931,862 - -0.2 931,862 - +0.0 931,862 - -0.1 931,862 - +0.9 931,894 + +0.0 931,894 + -0.2 931,895 - -0.4 931,901 + +0.0 931,901 + -0.4 931,901 + +0.3 931,901 + +0.1 931,902 - -2.0 931,902 - -0.0 932,042 - +0.5
Or see this region's nucleotide sequence