Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04185 and ABZR87_RS04190 are separated by 119 nucleotides ABZR87_RS04190 and ABZR87_RS04195 are separated by 233 nucleotides ABZR87_RS04195 and ABZR87_RS04200 are separated by 14 nucleotides ABZR87_RS04200 and ABZR87_RS04205 are separated by 80 nucleotides
ABZR87_RS04185: ABZR87_RS04185 - hypothetical protein, at 875,399 to 875,836
_RS04185
ABZR87_RS04190: ABZR87_RS04190 - hypothetical protein, at 875,956 to 876,207
_RS04190
ABZR87_RS04195: ABZR87_RS04195 - branched-chain amino acid ABC transporter permease, at 876,441 to 877,427
_RS04195
ABZR87_RS04200: ABZR87_RS04200 - branched-chain amino acid ABC transporter permease, at 877,442 to 878,326
_RS04200
ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615
_RS04205
Position (kb) 876
877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 875.522 kb on + strand, within ABZR87_RS04185 at 875.522 kb on + strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.541 kb on + strand, within ABZR87_RS04185 at 875.542 kb on - strand, within ABZR87_RS04185 at 875.542 kb on - strand, within ABZR87_RS04185 at 875.734 kb on + strand, within ABZR87_RS04185 at 875.734 kb on + strand, within ABZR87_RS04185 at 875.735 kb on - strand, within ABZR87_RS04185 at 875.879 kb on + strand at 876.022 kb on + strand, within ABZR87_RS04190 at 876.022 kb on + strand, within ABZR87_RS04190 at 876.023 kb on - strand, within ABZR87_RS04190 at 876.205 kb on + strand at 876.205 kb on + strand at 876.245 kb on + strand at 876.245 kb on + strand at 876.245 kb on + strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.264 kb on - strand at 876.264 kb on - strand at 876.305 kb on + strand at 876.305 kb on + strand at 876.305 kb on + strand at 876.306 kb on - strand at 876.334 kb on + strand at 876.334 kb on + strand at 876.335 kb on - strand at 876.360 kb on + strand at 876.361 kb on - strand at 876.361 kb on - strand at 876.361 kb on - strand at 876.557 kb on + strand, within ABZR87_RS04195 at 876.558 kb on - strand, within ABZR87_RS04195 at 876.829 kb on + strand, within ABZR87_RS04195 at 876.830 kb on - strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.952 kb on + strand, within ABZR87_RS04195 at 876.953 kb on - strand, within ABZR87_RS04195 at 876.953 kb on - strand, within ABZR87_RS04195 at 876.953 kb on - strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.100 kb on - strand, within ABZR87_RS04195 at 877.100 kb on - strand, within ABZR87_RS04195 at 877.100 kb on - strand, within ABZR87_RS04195 at 877.213 kb on + strand, within ABZR87_RS04195 at 877.214 kb on - strand, within ABZR87_RS04195 at 877.225 kb on + strand, within ABZR87_RS04195 at 877.225 kb on + strand, within ABZR87_RS04195 at 877.226 kb on - strand, within ABZR87_RS04195 at 877.226 kb on - strand, within ABZR87_RS04195 at 877.276 kb on + strand, within ABZR87_RS04195 at 877.394 kb on - strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.531 kb on - strand, within ABZR87_RS04200 at 877.726 kb on - strand, within ABZR87_RS04200 at 877.726 kb on - strand, within ABZR87_RS04200 at 877.803 kb on + strand, within ABZR87_RS04200 at 877.804 kb on - strand, within ABZR87_RS04200 at 877.884 kb on + strand, within ABZR87_RS04200 at 877.885 kb on - strand, within ABZR87_RS04200 at 877.944 kb on + strand, within ABZR87_RS04200 at 877.944 kb on + strand, within ABZR87_RS04200 at 877.945 kb on - strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.966 kb on - strand, within ABZR87_RS04200 at 877.966 kb on - strand, within ABZR87_RS04200 at 877.966 kb on - strand, within ABZR87_RS04200 at 878.025 kb on + strand, within ABZR87_RS04200 at 878.026 kb on - strand, within ABZR87_RS04200 at 878.043 kb on + strand, within ABZR87_RS04200 at 878.043 kb on + strand, within ABZR87_RS04200 at 878.044 kb on - strand, within ABZR87_RS04200 at 878.044 kb on - strand, within ABZR87_RS04200 at 878.044 kb on - strand, within ABZR87_RS04200 at 878.124 kb on + strand, within ABZR87_RS04200 at 878.140 kb on - strand, within ABZR87_RS04200 at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.254 kb on - strand at 878.254 kb on - strand at 878.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 875,522 + ABZR87_RS04185 0.28 -1.3 875,522 + ABZR87_RS04185 0.28 -1.7 875,523 - ABZR87_RS04185 0.28 -1.3 875,523 - ABZR87_RS04185 0.28 -0.2 875,523 - ABZR87_RS04185 0.28 -0.4 875,523 - ABZR87_RS04185 0.28 -0.2 875,541 + ABZR87_RS04185 0.32 -0.8 875,542 - ABZR87_RS04185 0.33 +0.2 875,542 - ABZR87_RS04185 0.33 +0.0 875,734 + ABZR87_RS04185 0.76 -0.3 875,734 + ABZR87_RS04185 0.76 -0.3 875,735 - ABZR87_RS04185 0.77 -0.5 875,879 + +0.2 876,022 + ABZR87_RS04190 0.26 -0.4 876,022 + ABZR87_RS04190 0.26 +0.1 876,023 - ABZR87_RS04190 0.27 -1.1 876,205 + +0.1 876,205 + -0.1 876,245 + +2.1 876,245 + +0.6 876,245 + -0.7 876,246 - -0.1 876,246 - -1.0 876,246 - -0.3 876,246 - -0.5 876,246 - -0.4 876,246 - -0.5 876,263 + -2.2 876,263 + -1.6 876,263 + +1.3 876,263 + -1.1 876,263 + -1.5 876,264 - -1.2 876,264 - -1.7 876,305 + -2.0 876,305 + -0.9 876,305 + -0.4 876,306 - -0.5 876,334 + -2.0 876,334 + -3.1 876,335 - +0.1 876,360 + -1.7 876,361 - -1.5 876,361 - -2.2 876,361 - -0.9 876,557 + ABZR87_RS04195 0.12 -0.0 876,558 - ABZR87_RS04195 0.12 -0.4 876,829 + ABZR87_RS04195 0.39 -1.9 876,830 - ABZR87_RS04195 0.39 -1.1 876,949 + ABZR87_RS04195 0.51 -1.2 876,949 + ABZR87_RS04195 0.51 -0.0 876,949 + ABZR87_RS04195 0.51 -0.5 876,949 + ABZR87_RS04195 0.51 -0.6 876,949 + ABZR87_RS04195 0.51 -0.7 876,949 + ABZR87_RS04195 0.51 +0.4 876,950 - ABZR87_RS04195 0.52 -0.7 876,950 - ABZR87_RS04195 0.52 -1.6 876,950 - ABZR87_RS04195 0.52 -1.2 876,950 - ABZR87_RS04195 0.52 -0.6 876,950 - ABZR87_RS04195 0.52 -0.0 876,950 - ABZR87_RS04195 0.52 -1.3 876,952 + ABZR87_RS04195 0.52 -1.8 876,953 - ABZR87_RS04195 0.52 -1.6 876,953 - ABZR87_RS04195 0.52 -1.7 876,953 - ABZR87_RS04195 0.52 -1.9 877,060 + ABZR87_RS04195 0.63 -0.4 877,060 + ABZR87_RS04195 0.63 -1.4 877,060 + ABZR87_RS04195 0.63 -1.7 877,060 + ABZR87_RS04195 0.63 -0.6 877,060 + ABZR87_RS04195 0.63 -0.3 877,060 + ABZR87_RS04195 0.63 -0.7 877,060 + ABZR87_RS04195 0.63 -0.5 877,061 - ABZR87_RS04195 0.63 -2.2 877,061 - ABZR87_RS04195 0.63 -0.2 877,061 - ABZR87_RS04195 0.63 +0.3 877,061 - ABZR87_RS04195 0.63 -1.2 877,099 + ABZR87_RS04195 0.67 +0.7 877,099 + ABZR87_RS04195 0.67 -1.2 877,099 + ABZR87_RS04195 0.67 -0.4 877,099 + ABZR87_RS04195 0.67 -0.5 877,099 + ABZR87_RS04195 0.67 -0.2 877,099 + ABZR87_RS04195 0.67 -0.8 877,099 + ABZR87_RS04195 0.67 -0.6 877,099 + ABZR87_RS04195 0.67 -0.1 877,099 + ABZR87_RS04195 0.67 -1.0 877,100 - ABZR87_RS04195 0.67 -1.2 877,100 - ABZR87_RS04195 0.67 -3.1 877,100 - ABZR87_RS04195 0.67 -1.1 877,213 + ABZR87_RS04195 0.78 -0.7 877,214 - ABZR87_RS04195 0.78 -0.9 877,225 + ABZR87_RS04195 0.79 -1.2 877,225 + ABZR87_RS04195 0.79 -0.8 877,226 - ABZR87_RS04195 0.80 -2.2 877,226 - ABZR87_RS04195 0.80 -1.1 877,276 + ABZR87_RS04195 0.85 -2.6 877,394 - -0.2 877,402 + -0.9 877,402 + -1.9 877,402 + -0.9 877,402 + -1.5 877,402 + -1.6 877,402 + -0.6 877,402 + -2.2 877,403 - -0.9 877,403 - -1.4 877,403 - -2.1 877,403 - -0.6 877,403 - -0.7 877,531 - ABZR87_RS04200 0.10 -0.2 877,726 - ABZR87_RS04200 0.32 -1.6 877,726 - ABZR87_RS04200 0.32 -0.6 877,803 + ABZR87_RS04200 0.41 -0.7 877,804 - ABZR87_RS04200 0.41 -1.4 877,884 + ABZR87_RS04200 0.50 -1.7 877,885 - ABZR87_RS04200 0.50 -0.3 877,944 + ABZR87_RS04200 0.57 -0.4 877,944 + ABZR87_RS04200 0.57 -1.2 877,945 - ABZR87_RS04200 0.57 -2.1 877,965 + ABZR87_RS04200 0.59 -0.7 877,965 + ABZR87_RS04200 0.59 -0.7 877,965 + ABZR87_RS04200 0.59 -1.9 877,965 + ABZR87_RS04200 0.59 -0.2 877,966 - ABZR87_RS04200 0.59 -1.2 877,966 - ABZR87_RS04200 0.59 -1.0 877,966 - ABZR87_RS04200 0.59 -1.5 878,025 + ABZR87_RS04200 0.66 -0.9 878,026 - ABZR87_RS04200 0.66 -1.6 878,043 + ABZR87_RS04200 0.68 +0.4 878,043 + ABZR87_RS04200 0.68 -1.2 878,044 - ABZR87_RS04200 0.68 -1.5 878,044 - ABZR87_RS04200 0.68 -2.2 878,044 - ABZR87_RS04200 0.68 -1.0 878,124 + ABZR87_RS04200 0.77 -0.5 878,140 - ABZR87_RS04200 0.79 +0.1 878,253 + -0.9 878,253 + -0.3 878,253 + -1.0 878,253 + -0.3 878,253 + -0.6 878,253 + -2.2 878,253 + -0.7 878,253 + -0.5 878,254 - -0.5 878,254 - -1.1 878,401 - -1.3
Or see this region's nucleotide sequence