Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00200 and ABZR87_RS00205 overlap by 4 nucleotides ABZR87_RS00205 and ABZR87_RS00210 are separated by 17 nucleotides ABZR87_RS00210 and ABZR87_RS00215 are separated by 125 nucleotides
ABZR87_RS00200: ABZR87_RS00200 - phosphoadenylyl-sulfate reductase, at 39,385 to 40,212
_RS00200
ABZR87_RS00205: ABZR87_RS00205 - DUF934 domain-containing protein, at 40,209 to 40,754
_RS00205
ABZR87_RS00210: ABZR87_RS00210 - nitrite/sulfite reductase, at 40,772 to 42,433
_RS00210
ABZR87_RS00215: ABZR87_RS00215 - sulfite exporter TauE/SafE family protein, at 42,559 to 43,332
_RS00215
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 39.806 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.887 kb on + strand, within ABZR87_RS00200 at 40.131 kb on - strand at 40.131 kb on - strand at 40.131 kb on - strand at 40.276 kb on + strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.830 kb on + strand at 40.830 kb on + strand at 40.830 kb on + strand at 40.831 kb on - strand at 40.872 kb on + strand at 41.005 kb on + strand, within ABZR87_RS00210 at 41.006 kb on - strand, within ABZR87_RS00210 at 41.514 kb on + strand, within ABZR87_RS00210 at 41.697 kb on + strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.727 kb on + strand, within ABZR87_RS00210 at 41.727 kb on + strand, within ABZR87_RS00210 at 41.751 kb on + strand, within ABZR87_RS00210 at 41.751 kb on + strand, within ABZR87_RS00210 at 41.752 kb on - strand, within ABZR87_RS00210 at 41.865 kb on + strand, within ABZR87_RS00210 at 41.865 kb on + strand, within ABZR87_RS00210 at 41.866 kb on - strand, within ABZR87_RS00210 at 41.871 kb on + strand, within ABZR87_RS00210 at 41.871 kb on + strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 42.156 kb on + strand, within ABZR87_RS00210 at 42.156 kb on + strand, within ABZR87_RS00210 at 42.156 kb on + strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.255 kb on + strand, within ABZR87_RS00210 at 42.256 kb on - strand, within ABZR87_RS00210 at 42.277 kb on + strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.279 kb on + strand at 42.279 kb on + strand at 42.279 kb on + strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.294 kb on + strand at 42.294 kb on + strand at 42.294 kb on + strand at 42.295 kb on - strand at 42.295 kb on - strand at 42.295 kb on - strand at 42.297 kb on + strand at 42.297 kb on + strand at 42.297 kb on + strand at 42.298 kb on - strand at 42.298 kb on - strand at 42.413 kb on + strand at 42.414 kb on + strand at 42.414 kb on + strand at 42.415 kb on - strand at 42.415 kb on - strand at 42.427 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.430 kb on - strand at 42.430 kb on - strand at 42.430 kb on - strand at 42.661 kb on - strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.761 kb on + strand, within ABZR87_RS00215 at 42.761 kb on + strand, within ABZR87_RS00215 at 42.762 kb on - strand, within ABZR87_RS00215 at 42.762 kb on - strand, within ABZR87_RS00215 at 42.806 kb on + strand, within ABZR87_RS00215 at 42.929 kb on + strand, within ABZR87_RS00215 at 43.135 kb on - strand, within ABZR87_RS00215 at 43.234 kb on + strand, within ABZR87_RS00215 at 43.234 kb on + strand, within ABZR87_RS00215 at 43.235 kb on - strand, within ABZR87_RS00215 at 43.235 kb on - strand, within ABZR87_RS00215 at 43.235 kb on - strand, within ABZR87_RS00215 at 43.319 kb on + strand at 43.319 kb on + strand at 43.319 kb on + strand at 43.320 kb on - strand at 43.320 kb on - strand at 43.320 kb on - strand at 43.357 kb on + strand at 43.358 kb on - strand at 43.358 kb on - strand at 43.378 kb on + strand at 43.378 kb on + strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.395 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.425 kb on + strand at 43.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 39,806 + ABZR87_RS00200 0.51 -3.3 39,836 + ABZR87_RS00200 0.54 -2.6 39,836 + ABZR87_RS00200 0.54 -1.3 39,887 + ABZR87_RS00200 0.61 -3.4 40,131 - -2.3 40,131 - -1.2 40,131 - -1.3 40,276 + ABZR87_RS00205 0.12 -2.0 40,552 - ABZR87_RS00205 0.63 -1.7 40,552 - ABZR87_RS00205 0.63 -2.4 40,552 - ABZR87_RS00205 0.63 -3.2 40,830 + -2.5 40,830 + -2.8 40,830 + -3.1 40,831 - -1.1 40,872 + -2.2 41,005 + ABZR87_RS00210 0.14 -3.2 41,006 - ABZR87_RS00210 0.14 -2.0 41,514 + ABZR87_RS00210 0.45 -3.8 41,697 + ABZR87_RS00210 0.56 -0.4 41,698 - ABZR87_RS00210 0.56 -2.9 41,698 - ABZR87_RS00210 0.56 -1.6 41,698 - ABZR87_RS00210 0.56 -2.8 41,727 + ABZR87_RS00210 0.57 -4.3 41,727 + ABZR87_RS00210 0.57 -3.0 41,751 + ABZR87_RS00210 0.59 -3.2 41,751 + ABZR87_RS00210 0.59 -2.5 41,752 - ABZR87_RS00210 0.59 -1.9 41,865 + ABZR87_RS00210 0.66 -1.6 41,865 + ABZR87_RS00210 0.66 -0.7 41,866 - ABZR87_RS00210 0.66 -2.4 41,871 + ABZR87_RS00210 0.66 -1.8 41,871 + ABZR87_RS00210 0.66 -1.9 41,872 - ABZR87_RS00210 0.66 -2.2 41,872 - ABZR87_RS00210 0.66 -1.8 41,872 - ABZR87_RS00210 0.66 -2.7 41,872 - ABZR87_RS00210 0.66 -3.4 42,156 + ABZR87_RS00210 0.83 +0.6 42,156 + ABZR87_RS00210 0.83 -4.0 42,156 + ABZR87_RS00210 0.83 -1.5 42,157 - ABZR87_RS00210 0.83 -3.5 42,157 - ABZR87_RS00210 0.83 -3.2 42,157 - ABZR87_RS00210 0.83 -2.3 42,157 - ABZR87_RS00210 0.83 -2.0 42,255 + ABZR87_RS00210 0.89 -2.1 42,256 - ABZR87_RS00210 0.89 -2.3 42,277 + -2.6 42,278 - -0.4 42,278 - -2.7 42,278 - -3.6 42,278 - -2.4 42,278 - -1.7 42,278 - -2.0 42,278 - -2.2 42,279 + -2.1 42,279 + -2.6 42,279 + -3.4 42,280 - -2.8 42,280 - -2.6 42,280 - -2.3 42,280 - -3.6 42,280 - -2.8 42,294 + -0.2 42,294 + -3.7 42,294 + -2.5 42,295 - -2.7 42,295 - +0.3 42,295 - -3.8 42,297 + -2.7 42,297 + +0.3 42,297 + -2.9 42,298 - -2.3 42,298 - -3.0 42,413 + -3.2 42,414 + -2.2 42,414 + -3.6 42,415 - -3.8 42,415 - -3.1 42,427 + -2.8 42,429 + -2.1 42,429 + -3.6 42,429 + -2.3 42,429 + -1.3 42,429 + -0.5 42,430 - -4.0 42,430 - -3.0 42,430 - -1.8 42,661 - ABZR87_RS00215 0.13 -0.6 42,719 + ABZR87_RS00215 0.21 -3.4 42,719 + ABZR87_RS00215 0.21 -3.2 42,719 + ABZR87_RS00215 0.21 -2.8 42,719 + ABZR87_RS00215 0.21 -0.8 42,719 + ABZR87_RS00215 0.21 -3.1 42,719 + ABZR87_RS00215 0.21 -3.7 42,719 + ABZR87_RS00215 0.21 -2.4 42,719 + ABZR87_RS00215 0.21 -2.1 42,720 - ABZR87_RS00215 0.21 +0.5 42,720 - ABZR87_RS00215 0.21 +0.1 42,720 - ABZR87_RS00215 0.21 +1.1 42,720 - ABZR87_RS00215 0.21 +0.5 42,720 - ABZR87_RS00215 0.21 -0.6 42,761 + ABZR87_RS00215 0.26 -2.8 42,761 + ABZR87_RS00215 0.26 -4.0 42,762 - ABZR87_RS00215 0.26 +1.1 42,762 - ABZR87_RS00215 0.26 -1.2 42,806 + ABZR87_RS00215 0.32 -3.2 42,929 + ABZR87_RS00215 0.48 -2.2 43,135 - ABZR87_RS00215 0.74 -0.2 43,234 + ABZR87_RS00215 0.87 -4.0 43,234 + ABZR87_RS00215 0.87 -2.2 43,235 - ABZR87_RS00215 0.87 -3.8 43,235 - ABZR87_RS00215 0.87 -3.1 43,235 - ABZR87_RS00215 0.87 -2.8 43,319 + -2.4 43,319 + -3.2 43,319 + -2.6 43,320 - -1.7 43,320 - -0.1 43,320 - -2.5 43,357 + -0.6 43,358 - +0.3 43,358 - +0.3 43,378 + -2.3 43,378 + -1.8 43,379 - -0.6 43,379 - -1.3 43,379 - +0.1 43,379 - -0.4 43,379 - +1.1 43,394 + -2.6 43,394 + -3.6 43,395 - -0.3 43,424 - -2.6 43,424 - -0.5 43,424 - -1.1 43,424 - -1.3 43,424 - -2.1 43,424 - -0.0 43,425 + -3.0 43,426 - -0.7
Or see this region's nucleotide sequence