Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4125 and Shewana3_4126 are separated by 75 nucleotides Shewana3_4126 and Shewana3_4127 are separated by 203 nucleotides
Shewana3_4125: Shewana3_4125 - glucosamine--fructose-6-phosphate aminotransferase (RefSeq), at 4,956,555 to 4,958,384
_4125
Shewana3_4126: Shewana3_4126 - DeoR family transcriptional regulator (RefSeq), at 4,958,460 to 4,959,230
_4126
Shewana3_4127: Shewana3_4127 - TonB-dependent siderophore receptor (RefSeq), at 4,959,434 to 4,961,542
_4127
Position (kb)
4958
4959
4960 Strain fitness (log2 ratio)
-2
-1
0
1 at 4958.518 kb on - strand at 4958.576 kb on - strand, within Shewana3_4126 at 4958.753 kb on - strand, within Shewana3_4126 at 4958.821 kb on - strand, within Shewana3_4126 at 4958.872 kb on - strand, within Shewana3_4126 at 4958.879 kb on - strand, within Shewana3_4126 at 4959.125 kb on - strand, within Shewana3_4126 at 4959.160 kb on - strand at 4959.587 kb on - strand at 4959.635 kb on - strand at 4959.721 kb on - strand, within Shewana3_4127 at 4960.017 kb on - strand, within Shewana3_4127 at 4960.112 kb on + strand, within Shewana3_4127
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,958,518 - +1.0 4,958,576 - Shewana3_4126 0.15 +0.9 4,958,753 - Shewana3_4126 0.38 +0.9 4,958,821 - Shewana3_4126 0.47 +0.4 4,958,872 - Shewana3_4126 0.53 +0.6 4,958,879 - Shewana3_4126 0.54 +0.9 4,959,125 - Shewana3_4126 0.86 +0.7 4,959,160 - +0.5 4,959,587 - +0.4 4,959,635 - +0.6 4,959,721 - Shewana3_4127 0.14 +0.5 4,960,017 - Shewana3_4127 0.28 +0.8 4,960,112 + Shewana3_4127 0.32 -2.1
Or see this region's nucleotide sequence