Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4009 and Shewana3_4010 are separated by 25 nucleotides Shewana3_4010 and Shewana3_4011 are separated by 61 nucleotides Shewana3_4011 and Shewana3_4012 are separated by 66 nucleotides
Shewana3_4009: Shewana3_4009 - competence protein ComF (RefSeq), at 4,812,987 to 4,813,775
_4009
Shewana3_4010: Shewana3_4010 - bioH protein (RefSeq), at 4,813,801 to 4,814,595
_4010
Shewana3_4011: Shewana3_4011 - hypothetical protein (RefSeq), at 4,814,657 to 4,815,211
_4011
Shewana3_4012: Shewana3_4012 - sulfatase (RefSeq), at 4,815,278 to 4,817,242
_4012
Position (kb)
4814
4815
4816 Strain fitness (log2 ratio)
-2
-1
0
1 at 4813.666 kb on + strand, within Shewana3_4009 at 4813.780 kb on - strand at 4814.598 kb on - strand at 4815.144 kb on + strand, within Shewana3_4011 at 4815.154 kb on + strand, within Shewana3_4011 at 4815.183 kb on - strand at 4815.310 kb on + strand at 4815.335 kb on + strand at 4815.513 kb on + strand, within Shewana3_4012 at 4815.544 kb on - strand, within Shewana3_4012 at 4815.544 kb on - strand, within Shewana3_4012 at 4815.546 kb on + strand, within Shewana3_4012 at 4815.701 kb on - strand, within Shewana3_4012 at 4815.823 kb on + strand, within Shewana3_4012 at 4815.823 kb on + strand, within Shewana3_4012 at 4815.841 kb on + strand, within Shewana3_4012 at 4815.849 kb on - strand, within Shewana3_4012 at 4815.849 kb on - strand, within Shewana3_4012 at 4815.956 kb on + strand, within Shewana3_4012
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,813,666 + Shewana3_4009 0.86 -0.6 4,813,780 - -0.0 4,814,598 - +0.2 4,815,144 + Shewana3_4011 0.88 +0.3 4,815,154 + Shewana3_4011 0.90 +0.7 4,815,183 - +0.1 4,815,310 + +0.4 4,815,335 + -0.0 4,815,513 + Shewana3_4012 0.12 -0.7 4,815,544 - Shewana3_4012 0.14 +0.7 4,815,544 - Shewana3_4012 0.14 +0.7 4,815,546 + Shewana3_4012 0.14 -2.0 4,815,701 - Shewana3_4012 0.22 +0.8 4,815,823 + Shewana3_4012 0.28 -0.4 4,815,823 + Shewana3_4012 0.28 -0.9 4,815,841 + Shewana3_4012 0.29 -0.1 4,815,849 - Shewana3_4012 0.29 +0.8 4,815,849 - Shewana3_4012 0.29 +0.0 4,815,956 + Shewana3_4012 0.35 -0.9
Or see this region's nucleotide sequence