Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4001

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,802,146	+				+0.7
4,802,326	-		Shewana3_4000	0.26	+0.2
4,802,371	+		Shewana3_4000	0.30	-0.5
4,802,493	-		Shewana3_4000	0.42	+0.4
4,802,565	+		Shewana3_4000	0.49	-1.3
4,802,596	+		Shewana3_4000	0.52	-0.3
4,802,632	+		Shewana3_4000	0.55	-1.4
4,802,680	+		Shewana3_4000	0.60	-1.1
4,802,815	+		Shewana3_4000	0.73	+0.2
4,803,118	-				-0.5
4,803,197	-				-2.0
4,803,224	+				-0.1
4,803,296	+		Shewana3_4001	0.13	-0.2
4,803,311	-		Shewana3_4001	0.14	-0.1
4,803,376	+		Shewana3_4001	0.19	+0.4
4,803,376	+		Shewana3_4001	0.19	+0.1
4,803,376	+		Shewana3_4001	0.19	+0.6
4,803,376	+		Shewana3_4001	0.19	-0.8
4,803,384	-		Shewana3_4001	0.19	-0.9
4,803,413	-		Shewana3_4001	0.21	-0.3
4,803,585	+		Shewana3_4001	0.34	-0.6
4,803,675	+		Shewana3_4001	0.40	-0.1
4,803,709	+		Shewana3_4001	0.43	+0.2
4,803,761	-		Shewana3_4001	0.47	-0.8
4,803,769	+		Shewana3_4001	0.47	-1.3
4,803,777	-		Shewana3_4001	0.48	-1.2
4,804,192	+		Shewana3_4001	0.78	-0.4
4,804,195	+		Shewana3_4001	0.78	-0.3
4,804,203	-		Shewana3_4001	0.79	-0.4
4,804,294	+		Shewana3_4001	0.86	-1.1
4,804,302	-		Shewana3_4001	0.86	-1.2
4,804,302	-		Shewana3_4001	0.86	-1.5
4,804,395	-				-1.4
4,804,400	-				-0.1
4,804,400	-				-0.4
4,804,437	+				-1.1
4,804,445	-				-0.6
4,804,606	-				-1.1
4,804,729	-				-0.4
4,804,738	+				-0.4
4,804,834	-		Shewana3_4002	0.14	-1.4
4,804,863	-		Shewana3_4002	0.15	+0.1
4,804,959	+		Shewana3_4002	0.20	-1.6
4,805,115	+		Shewana3_4002	0.28	-1.6
4,805,262	+		Shewana3_4002	0.36	-0.7
4,805,271	+		Shewana3_4002	0.36	+1.0
4,805,390	+		Shewana3_4002	0.42	-1.4
4,805,390	+		Shewana3_4002	0.42	-0.4